MS000356 (gene) Bitter gourd (TR) v1

Overview


Name	MS000356
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold44: 1105797 .. 1106195 (-)
RNA-Seq Expression	MS000356
Synteny	MS000356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCGGTGCGGAATTTGGCTCAGAAGGAAACTCGTCGTCGTTTTCTCGTCTCAGAAAAATTATATTATTTTCCCTTTCCGACCCATTTTCTTTCCCCTCCCCCACTTCTCCTCCTCGTCTAGCAGAAAAACAAAGGAGAGGCTCTCGGGCAACTCTTATTCCACGGGCAGCTAATACAAGCTGCCCCACCCGTCTATCTCCGACCATCATTTCATGCTGTGAGGACACGTGGTACCCATGACCAACCCTTCCTCCAATTCCTTTCTCTTTCCATTCAATTTCTCATATCGCGAGAATTATCCCTTGAGGACACGTGTCAAAAGTGCTCCAAAAGTGGAGGCCCAGCTCGCCAGGGCGACACAAGTGGATCAATCACAAACTTCCACGCCAGGCTTGTCA

mRNA sequence

GTGCGGTGCGGAATTTGGCTCAGAAGGAAACTCGTCGTCGTTTTCTCGTCTCAGAAAAATTATATTATTTTCCCTTTCCGACCCATTTTCTTTCCCCTCCCCCACTTCTCCTCCTCGTCTAGCAGAAAAACAAAGGAGAGGCTCTCGGGCAACTCTTATTCCACGGGCAGCACAAGCTGCCCCACCCGTCTATCTCCGACCATCATTTCATGCTGTGAGGACACGTGTGCTCCAAAAGTGGAGGCCCAGCTCGCCAGGGCGACACAAGTGGATCAATCACAAACTTCCACGCCAGGCTTGTCA

Coding sequence (CDS)

GTGCGGTGCGGAATTTGGCTCAGAAGGAAACTCGTCGTCGTTTTCTCGTCTCAGAAAAATTATATTATTTTCCCTTTCCGACCCATTTTCTTTCCCCTCCCCCACTTCTCCTCCTCGTCTAGCAGAAAAACAAAGGAGAGGCTCTCGGGCAACTCTTATTCCACGGGCAGCACAAGCTGCCCCACCCGTCTATCTCCGACCATCATTTCATGCTGTGAGGACACGTGTGCTCCAAAAGTGGAGGCCCAGCTCGCCAGGGCGACACAAGTGGATCAATCACAAACTTCCACGCCAGGCTTGTCA

Protein sequence

VRCGIWLRRKLVVVFSSQKNYIIFPFRPIFFPLPHFSSSSSRKTKERLSGNSYSTGSTSCPTRLSPTIISCCEDTCAPKVEAQLARATQVDQSQTSTPGLS

Homology

[Close]

BLAST of MS000356 vs. NCBI nr
Match: KGN57313.1 (hypothetical protein Csa_010772 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 57/100 (57.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 3   CGIWLRRKLVVVFSSQKNYIIFPFRPIFFPLPHFSSSSSRKTKERLSGNSYSTGS-TSCP 62
           CGI LRRK V VF     +     R             + + KE+LSGNS STGS T CP
Sbjct: 3   CGISLRRKRVAVFLCGGTFRALVLR------------GAARKKEKLSGNSNSTGSYTGCP 62

Query: 63  TRLSPTIISCCEDTCAPKVEAQLARATQVDQSQTSTPGLS 102
           TRL PT ISCCEDTCA KVEA LAR   VDQS+TSTPGLS
Sbjct: 63  TRLHPTSISCCEDTCARKVEAHLARTILVDQSETSTPGLS 90

[Close]

BLAST of MS000356 vs. ExPASy TrEMBL
Match: A0A0A0L6B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178540 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 57/100 (57.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 3   CGIWLRRKLVVVFSSQKNYIIFPFRPIFFPLPHFSSSSSRKTKERLSGNSYSTGS-TSCP 62
           CGI LRRK V VF     +     R             + + KE+LSGNS STGS T CP
Sbjct: 3   CGISLRRKRVAVFLCGGTFRALVLR------------GAARKKEKLSGNSNSTGSYTGCP 62

Query: 63  TRLSPTIISCCEDTCAPKVEAQLARATQVDQSQTSTPGLS 102
           TRL PT ISCCEDTCA KVEA LAR   VDQS+TSTPGLS
Sbjct: 63  TRLHPTSISCCEDTCARKVEAHLARTILVDQSETSTPGLS 90

The following BLAST results are available for this feature:

BLAST of MS000356 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57313.1	4.0e-15	57.00	hypothetical protein Csa_010772 [Cucumis sativus]	[more]

BLAST of MS000356 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6B1	1.9e-15	57.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178540 PE=4 SV=1	[more]

BLAST of MS000356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000356.1	MS000356.1	mRNA