![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
MS000290 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TCAGGAGCTTATAAGTACGTGTCTGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGAGGTTTCTGCAAAGAGTGAGATGCTGGGAATATCGCCAGCATCCTTCAATCGTTCGTGTTACGCATCCCACACGCCCAGATAAGGCACGCCGATTGGGCTACAAGGCTAAACAGGTACACAACTTGCTGTCTTGTTCTTGCTTTATTATGCATTTTCTGTTTGAGCTTCACAACATATTTAAAATCTAACCTGATAGTTAGTGAGATAGTACGAGTTTTGATTCCTTCTGCTGCCCGTTTTTCCCGAGAAAGTATTAAAATTGTTAGCTTGCAAAATTCCTTAGTGCACAATACATGTAGAAGTTGATACTTCCTTTATGATAATAATGTGATACACCTATCCTTGGTTTATGCATTACTTACGTTTGCCTAAACTGACTTTCTCTTCTTTCACATTGAGAAAATCTGTATGTCCTCCTTATTCTTACCCTTACGAAAGTTTCTATTTGATGTTTTGTTAATTGGTGGAATGCTTCATGTAAAAGGTCTGAGCTCTCGGATGTAAATTTTTAAATTGTACTGCAAACCTGCAATGAATGGATTTTGGGTACCATGAAATCCGATGTATCGTTTTCTTCATATTGCCTCTTTATATTTCAAATCTTTGGATAAAGCACTCTGTAACCATGTTTCTTTTCGATGATAATATTGTAAATGTTATTTCTTTCTCCATTTAATGTTGATATACATCTTTTATTTGTGGTGTGATAGCTTGATTTACAGTATGGACATGTACTGATGAAATTATACCTTTGTCCAAATTAAGGGGACAGACATTATTGCGGTTATGCAAGCAGTGTACATTTGGTTGGCTGTAGTGCTGATACTTGTTTGACAGGAACAGAGAATGTATTGTGAATGTTTAATCTTCCACATTATAACGTAGATCTGAAATATGGTTATTTCATATGCAACTGGCCATTTTTTCAACTACTGTGTGCATTTTCTTATCTTAGCTACAACCTTGTAGGGTTATGTTGTTTACCGTGTACGTGTGAGGCGTGGTGGGCGAAAGAGGCCTGTTCCCAAGGGTATTGTGTATGGTAAGCCCACAAACCAGGGTGTTACTCAGTTGAAATTCCAACGCAGCAAGCGTTCAGTTGCTGAGGAGCGTGCTGGGCGTAAGTTGGGTGGTCTCAGGGTTCTCAACTCCTACTGGATTAATGAGGTAACAACCAATTATTAAGATGAAATTTACACAACTTCACATTGACATATGTTTATTCCTTGTATGTGTTCGTATGGATCCTAATATACCTGTTGGTGAAAATTTTGAGTCGTAATTATCTCTAAGTTGTTTTTGCTGAAGTTTTGGATGTTGCATTCTCGATTGTTTCTCTGATAATCTCTCTTTGTTTTTCCAGGATTCGACATACAAGTACTATGAAGTAATCTTGGTTGATGTGGCCCATAATGCTGTTCGTAATGACCCGAGAATAAACTGGATCTGCAACCCTGTTCACAAGCACAGGGAACTTCGTGGACTCACATCTGCTGGGAAGAAGTACAGAGGTCTTCGTGGAAAAGGCCATCTCCACCACAAGGCCAGACCTTCCAGAAGGGCAACGTGGAAAAGGAACAACACTCTCTCTCTTCGCCGCTACCGT TCAGGAGCTTATAAGTACGTGTCTGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGAGGTTTCTGCAAAGAGTGAGATGCTGGGAATATCGCCAGCATCCTTCAATCGTTCGTGTTACGCATCCCACACGCCCAGATAAGGCACGCCGATTGGGCTACAAGGCTAAACAGGGTTATGTTGTTTACCGTGTACGTGTGAGGCGTGGTGGGCGAAAGAGGCCTGTTCCCAAGGGTATTGTGTATGGTAAGCCCACAAACCAGGGTGTTACTCAGTTGAAATTCCAACGCAGCAAGCGTTCAGTTGCTGAGGAGCGTGCTGGGCGTAAGTTGGGTGGTCTCAGGGTTCTCAACTCCTACTGGATTAATGAGGATTCGACATACAAGTACTATGAAGTAATCTTGGTTGATGTGGCCCATAATGCTGTTCGTAATGACCCGAGAATAAACTGGATCTGCAACCCTGTTCACAAGCACAGGGAACTTCGTGGACTCACATCTGCTGGGAAGAAGTACAGAGGTCTTCGTGGAAAAGGCCATCTCCACCACAAGGCCAGACCTTCCAGAAGGGCAACGTGGAAAAGGAACAACACTCTCTCTCTTCGCCGCTACCGT TCAGGAGCTTATAAGTACGTGTCTGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGAGGTTTCTGCAAAGAGTGAGATGCTGGGAATATCGCCAGCATCCTTCAATCGTTCGTGTTACGCATCCCACACGCCCAGATAAGGCACGCCGATTGGGCTACAAGGCTAAACAGGGTTATGTTGTTTACCGTGTACGTGTGAGGCGTGGTGGGCGAAAGAGGCCTGTTCCCAAGGGTATTGTGTATGGTAAGCCCACAAACCAGGGTGTTACTCAGTTGAAATTCCAACGCAGCAAGCGTTCAGTTGCTGAGGAGCGTGCTGGGCGTAAGTTGGGTGGTCTCAGGGTTCTCAACTCCTACTGGATTAATGAGGATTCGACATACAAGTACTATGAAGTAATCTTGGTTGATGTGGCCCATAATGCTGTTCGTAATGACCCGAGAATAAACTGGATCTGCAACCCTGTTCACAAGCACAGGGAACTTCGTGGACTCACATCTGCTGGGAAGAAGTACAGAGGTCTTCGTGGAAAAGGCCATCTCCACCACAAGGCCAGACCTTCCAGAAGGGCAACGTGGAAAAGGAACAACACTCTCTCTCTTCGCCGCTACCGT SGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR Homology
BLAST of MS000290 vs. NCBI nr
Match: XP_022141052.1 (60S ribosomal protein L15-2 [Momordica charantia] >XP_022154831.1 60S ribosomal protein L15-2 [Momordica charantia]) HSP 1 Score: 418.7 bits (1075), Expect = 2.9e-113 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of MS000290 vs. NCBI nr
Match: XP_022941772.1 (60S ribosomal protein L15 [Cucurbita moschata] >XP_022991671.1 60S ribosomal protein L15 [Cucurbita maxima] >KAG6600187.1 60S ribosomal protein L15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030848.1 60S ribosomal protein L15, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 417.2 bits (1071), Expect = 8.4e-113 Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of MS000290 vs. NCBI nr
Match: XP_022922395.1 (60S ribosomal protein L15-2-like [Cucurbita moschata] >XP_022957930.1 60S ribosomal protein L15-2-like [Cucurbita moschata] >XP_022972988.1 60S ribosomal protein L15-2-like [Cucurbita maxima] >XP_023521483.1 60S ribosomal protein L15-2 [Cucurbita pepo subsp. pepo] >XP_023533846.1 60S ribosomal protein L15-2 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533847.1 60S ribosomal protein L15-2 isoform X2 [Cucurbita pepo subsp. pepo] >KAG6579403.1 60S ribosomal protein L15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016881.1 60S ribosomal protein L15, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6606168.1 60S ribosomal protein L15, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 416.8 bits (1070), Expect = 1.1e-112 Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 0
BLAST of MS000290 vs. NCBI nr
Match: XP_004146916.1 (60S ribosomal protein L15-1 [Cucumis sativus] >XP_011650580.1 60S ribosomal protein L15-1 [Cucumis sativus] >XP_011650582.1 60S ribosomal protein L15-1 [Cucumis sativus] >KGN53150.1 hypothetical protein Csa_014815 [Cucumis sativus] >KGN56283.1 hypothetical protein Csa_009879 [Cucumis sativus] >KGN56284.1 hypothetical protein Csa_011281 [Cucumis sativus]) HSP 1 Score: 415.6 bits (1067), Expect = 2.4e-112 Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0
BLAST of MS000290 vs. NCBI nr
Match: XP_023514606.1 (60S ribosomal protein L15-1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 414.8 bits (1065), Expect = 4.2e-112 Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0
BLAST of MS000290 vs. ExPASy Swiss-Prot
Match: O65082 (60S ribosomal protein L15-2 OS=Picea mariana OX=3335 GN=SB62 PE=2 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 5.5e-107 Identity = 184/203 (90.64%), Postives = 194/203 (95.57%), Query Frame = 0
BLAST of MS000290 vs. ExPASy Swiss-Prot
Match: O23515 (60S ribosomal protein L15-1 OS=Arabidopsis thaliana OX=3702 GN=RPL15A PE=2 SV=1) HSP 1 Score: 387.5 bits (994), Expect = 9.4e-107 Identity = 187/203 (92.12%), Postives = 195/203 (96.06%), Query Frame = 0
BLAST of MS000290 vs. ExPASy Swiss-Prot
Match: Q8VYF1 (60S ribosomal protein L15-2 OS=Arabidopsis thaliana OX=3702 GN=RPL15B PE=2 SV=1) HSP 1 Score: 386.7 bits (992), Expect = 1.6e-106 Identity = 186/203 (91.63%), Postives = 195/203 (96.06%), Query Frame = 0
BLAST of MS000290 vs. ExPASy Swiss-Prot
Match: O82528 (60S ribosomal protein L15 OS=Petunia hybrida OX=4102 GN=RPL15 PE=2 SV=1) HSP 1 Score: 386.0 bits (990), Expect = 2.7e-106 Identity = 188/203 (92.61%), Postives = 194/203 (95.57%), Query Frame = 0
BLAST of MS000290 vs. ExPASy Swiss-Prot
Match: O65050 (60S ribosomal protein L15-1 OS=Picea mariana OX=3335 GN=SB61 PE=2 SV=1) HSP 1 Score: 382.1 bits (980), Expect = 3.9e-105 Identity = 182/203 (89.66%), Postives = 194/203 (95.57%), Query Frame = 0
BLAST of MS000290 vs. ExPASy TrEMBL
Match: A0A6J1CIS0 (Ribosomal protein L15 OS=Momordica charantia OX=3673 GN=LOC111011546 PE=3 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 1.4e-113 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of MS000290 vs. ExPASy TrEMBL
Match: A0A6J1JRE5 (Ribosomal protein L15 OS=Cucurbita maxima OX=3661 GN=LOC111488214 PE=3 SV=1) HSP 1 Score: 417.2 bits (1071), Expect = 4.1e-113 Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of MS000290 vs. ExPASy TrEMBL
Match: A0A6J1FNE6 (Ribosomal protein L15 OS=Cucurbita moschata OX=3662 GN=LOC111447041 PE=3 SV=1) HSP 1 Score: 417.2 bits (1071), Expect = 4.1e-113 Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of MS000290 vs. ExPASy TrEMBL
Match: A0A6J1H209 (Ribosomal protein L15 OS=Cucurbita moschata OX=3662 GN=LOC111459317 PE=3 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 5.3e-113 Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 0
BLAST of MS000290 vs. ExPASy TrEMBL
Match: A0A6J1IBQ7 (Ribosomal protein L15 OS=Cucurbita maxima OX=3661 GN=LOC111471514 PE=3 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 5.3e-113 Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 0
BLAST of MS000290 vs. TAIR 10
Match: AT4G16720.1 (Ribosomal protein L23/L15e family protein ) HSP 1 Score: 387.5 bits (994), Expect = 6.6e-108 Identity = 187/203 (92.12%), Postives = 195/203 (96.06%), Query Frame = 0
BLAST of MS000290 vs. TAIR 10
Match: AT4G17390.1 (Ribosomal protein L23/L15e family protein ) HSP 1 Score: 386.7 bits (992), Expect = 1.1e-107 Identity = 186/203 (91.63%), Postives = 195/203 (96.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|