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MS000260 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCACAATTTTAACTACGAGGAGCACGAACACGAAGTCTATGGAGGCGATATTCCCGACGACGGAGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAGGGTTACGAGGCCGAGCCCAGTAACGCCAACTCCAAGGTACCTTTCTCCACTTCTTCTCTGTTCGTTCCGAGCCTCTTCCATGGAGTTTTCTGTCTCATTCTCTGTGCTTCCGATGCTAGGACTTGGAGGACATGAAAAGGAGGCTCAAGGAGATCGAGGAGGAAGCCGGTGCCCTTCGGGAAATGCAGGCCAAGGTTGAGAAGGAGATGGGTGCTGTTCAAGGTATCTTCATTATTCTTCTGTGTAATTCAGTTGGTGGTTGTTGAATTCCGTGCTTGATCTGGGCTTGAATTTCTTTAACTGGTCCTTAGTGTGGTGGGAAGGAGGATTTAAGTTGCTTGAATGAGCTTTGTAGTTTATTTGTAAGACGGGCATTGTTTGACCCTGGCTCTTTCGTGGACTTCGATTCAGTTGCTTTTCTCTACGGGAACAGACCCGAAAACCTAGATTTTAGCCTGATCATGTGTATGCACATTTAAAGGGTTTAATTAATTTAATTTAATTTAGTTGCAAAATTGAGAATCAGGTTGTTTGAAGCTCTAGGAGCTGTTAAGGATGTAACGGGGTTTTTGGTATTCTAGTTCCAGAGATTCTACAAAGAGGTGTCGTCTACAGCGGAATGATAAATGAGGTTATCGAAGAGTCGAAATAGAAGAGCTTTTTAAATGGATTAGGAGCCCCCTTGGGGGAAGTGTCGTGTCTACGACGAGGTTTATCACCTCTCTTAGGTGTCCATAACGAAAGAGTTTTATAATCATTATGTCTCTTTTTTCTCACCAATTGAATCGCTTTTTACTTTTCAACAAACTTCGTTATAGTTTTGTTTCTCATGCAAAGAAAAGGAAACAGGAGATTGCCAGATATTGAAAATTTTGAGTTTTGCGAATCGTTGTTTATGCTTATTATGTCAATAGGTGCATAATGTTCTTAGATTTTTTTTGTAGTCTTGAGGTTTTTGTTTTATGTTTATAAACCAACTAGATAATTTTAAAGATTTTCTATGCTTTGATAATACTTGAAAAACTTCTTCAAATGGTTGTCTTTCATCTTGGTGGAATGGAAGTTAAGTTCTCTCTACGTTGGTTTAATTTTGTCACATTTTTTTAATAATATTTTTCACTTTATCAATGAATCAATTTGATTGTTTAATGTCCCCCTATTTCCTTTTCAGTTATGGCCTTATAGGTATATTACGTTTATAGCTGTACAAAACTTTAGGAACTTTGAGCTTGTGAAGTATGCAATATGCGTGTGATCCTGTGTGGAGGTCTACTGATTTGAAACTTTACAGGATAGTTTTGTGATGAATTTACTGCTCTATTTCTTGTTATCATTATCTGCTTTTTGGTGATGGGAAATTTATTAATCAATGGAAGCTTTATCTCAAGGTTTATAGTCTATTTGTAATTAACTTGTATTCCTTTTAACATGTAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCCCGATCTGTATATGTTGGTAATGTGAGATTTATCACCCTTTTAGTTCACTATGTTATTTAAATGTTAAAGTTTTGCAGTACACATTTCTAGTATTACATTTGTAGTATTGGTTTCCTTTTCTTTTAGTCAACAACCATGGATGGTAGTTATATTCAAATTATCTAAATTACCGTGTTAAAAATTCTTATAAAAAACAAATTACTGTATTAAAAATGTTGATAAGCATCTTTTAAAAATTATTTTACTTCAGATGACAATTTTTTTAATTAAAAATTTTCATCGAGAAATAATACTTGATAAGAAATATAGAAGGTACTACCAAAATTTATCTACTCTTTGTAGGAGTTTATAAGAAGCCGCTCCAATGTGTTATTACGAAGTGAGTTTAATTACACAGAACTAGAAAGTGCACACTAACCAGACCTATGGATGCTAAGTCTAGGACCTCTTCCCAACTCATGCTCCTCCAATTGAAACGTCTCCAGTTTTTTTCTTACCATAGCCCAGAACAAACGTTCTTGCTGTGTTGATCTATCAGGGTTTTTTTTCTTCTTTCACAAATTCTTGCCACAAGAGAAAATGTAAAAATTCCTTGGTTCTCGTCCGCTTTCAAAAAAAGCTAACAACAGCTAGGAATTATTGCCATATTACGTCATTTCTTGTGTGATTTATCCAGTATCACCTTGTTGACATTTCCTGAGAAAGGGTCCAGCCACCATGGTTTGACCTTGTGGTCATTGAGTTCGAACTATGGTGGTCAATTACGATTTAAAATTCTACAAGTTTCCTTGCAACCAAATGGAGTAAGCAGATTAAAATTCAAAAGAATTCATTTCCACCCATGTATCGTGTCAATAGGAAATTCTCCCACCATCTCCATTCTCCAAATTCAATTGTAGTAAAGTTATCAATGTGATGTTTTAGTTTGCTATTACTCCCATCAAGGACTCTGTTCACTTCCGTTCTTTGTATACCACCCATTTTTTTCCCTTTCTCAAATATGCTAACCACCACCTTATGGCACTGGTCTTTTGGAAATCTCCATAACCACTAGTCCATAGTGCCACATTTTTCTTTCTTAAGTTGCTGTGCTTTGCCTAACCCACCAGGCTAAAGTTGCAATTATTATTTGCCAGTTGCCACAAAGATACCATAATCAATTAGCATGGAAAAAATCATTGGATGAAACAATTTCAAGAAGTGACCAAAATCTTGGACCTCAGGGAAGTGCCAATGTTCTGATTGTTTGCTTCAATTCAGTGTAACTTTTCTACTCTTGGGACTGGGCCTTGGGTGCCCCCTAGGTATGGGGGAGCAAAGCTCCGACCCATAGTTATATAAAAAAAAAAGAACAGAAAGAAAAAGAAGATTCAGCGTAACCTTTTATGTTAGTTCTCGTTTCATTGTTTTCTTTTTGTGAATTTTTTGTCAAGTATGTTTCAAGCCATTGTAAGCTGTTACCTGAAACAATATATAATCAATAGATTTCGAAGCTTGGGTCTAAAGATGTTATTCCTTAAATAGATGCTTCTTATCTGAAGCCCTATTAAGTTTTGATGGCATGCTGAATTGTTATTTCTCTGTGCACATGAATTTTCATATCTCCTCTCATTTCACAATGTTTTCCTTTTGTCACATCCCAATACAAAATGATTTATTATTTCTATTGTGGTTTTTACTTCAGGTTGATTATGCATGCACTCCTGAGGAGGTTCAACAACATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACAGACAAGTTCGGTCACCCTAAGGGATTTGCTTATGTTGAGTTTGTGGAGGTTGATGCCGTACAGAATGCTTTGCTGTTGAATGAATCAGAGTTGCACGGTCGCCAACTAAAGGTCTTTTGAAATTGCATACACAAGTGCTTTTAGTTAACTTTGGTGGCCCAATTTTGTAAACGAGTGATGTGCTGTTGGAGAGTCGTGAGGGAAGGGAGTACATAGAGAAGGGAAGTATCTTAGGAGGCTTTCGGTATACATAGTTTTCTTAGGCTGGGAGAGTGAGGGAGCTTTCACAACATCTCCAATCATGTACTTTCATTCTGGATAAATAATATGGTGTTCTACCACTGACTCGTAGGTTTTTGGTACATTTTACAGGTCTCTGCCAAAAGGACAAATGTCCCTGGAATGAAGCAATACCGAGGAAGGCGGCCCAGCTCTTTTGGCTTTCGAGGTGGTCGTCGGCCCTTCATGCCTGCTGCACCCTTTTATCCTTCATATGGTTATGGG ATGGAGCACAATTTTAACTACGAGGAGCACGAACACGAAGTCTATGGAGGCGATATTCCCGACGACGGAGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAGGGTTACGAGGCCGAGCCCAGTAACGCCAACTCCAAGGACTTGGAGGACATGAAAAGGAGGCTCAAGGAGATCGAGGAGGAAGCCGGTGCCCTTCGGGAAATGCAGGCCAAGGTTGAGAAGGAGATGGGTGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCCCGATCTGTATATGTTGGTAATGTTGATTATGCATGCACTCCTGAGGAGGTTCAACAACATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACAGACAAGTTCGGTCACCCTAAGGGATTTGCTTATGTTGAGTTTGTGGAGGTTGATGCCGTACAGAATGCTTTGCTGTTGAATGAATCAGAGTTGCACGGTCGCCAACTAAAGGTCTCTGCCAAAAGGACAAATGTCCCTGGAATGAAGCAATACCGAGGAAGGCGGCCCAGCTCTTTTGGCTTTCGAGGTGGTCGTCGGCCCTTCATGCCTGCTGCACCCTTTTATCCTTCATATGGTTATGGG ATGGAGCACAATTTTAACTACGAGGAGCACGAACACGAAGTCTATGGAGGCGATATTCCCGACGACGGAGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAGGGTTACGAGGCCGAGCCCAGTAACGCCAACTCCAAGGACTTGGAGGACATGAAAAGGAGGCTCAAGGAGATCGAGGAGGAAGCCGGTGCCCTTCGGGAAATGCAGGCCAAGGTTGAGAAGGAGATGGGTGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCCCGATCTGTATATGTTGGTAATGTTGATTATGCATGCACTCCTGAGGAGGTTCAACAACATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACAGACAAGTTCGGTCACCCTAAGGGATTTGCTTATGTTGAGTTTGTGGAGGTTGATGCCGTACAGAATGCTTTGCTGTTGAATGAATCAGAGTTGCACGGTCGCCAACTAAAGGTCTCTGCCAAAAGGACAAATGTCCCTGGAATGAAGCAATACCGAGGAAGGCGGCCCAGCTCTTTTGGCTTTCGAGGTGGTCGTCGGCCCTTCATGCCTGCTGCACCCTTTTATCCTTCATATGGTTATGGG MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG Homology
BLAST of MS000260 vs. NCBI nr
Match: XP_022141261.1 (polyadenylate-binding protein 1-like isoform X1 [Momordica charantia]) HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
BLAST of MS000260 vs. NCBI nr
Match: XP_022141262.1 (polyadenylate-binding protein 1-like isoform X2 [Momordica charantia]) HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113 Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0
BLAST of MS000260 vs. NCBI nr
Match: XP_038876136.1 (polyadenylate-binding protein 1-like isoform X1 [Benincasa hispida]) HSP 1 Score: 401.7 bits (1031), Expect = 3.9e-108 Identity = 210/218 (96.33%), Postives = 213/218 (97.71%), Query Frame = 0
BLAST of MS000260 vs. NCBI nr
Match: XP_022941798.1 (polyadenylate-binding protein 1-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 398.7 bits (1023), Expect = 3.3e-107 Identity = 207/219 (94.52%), Postives = 213/219 (97.26%), Query Frame = 0
BLAST of MS000260 vs. NCBI nr
Match: XP_008453839.1 (PREDICTED: polyadenylate-binding protein 1-like isoform X2 [Cucumis melo]) HSP 1 Score: 397.1 bits (1019), Expect = 9.6e-107 Identity = 207/218 (94.95%), Postives = 211/218 (96.79%), Query Frame = 0
BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 1.6e-72 Identity = 154/218 (70.64%), Postives = 175/218 (80.28%), Query Frame = 0
BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 5.9e-67 Identity = 145/217 (66.82%), Postives = 170/217 (78.34%), Query Frame = 0
BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 3.8e-66 Identity = 150/215 (69.77%), Postives = 166/215 (77.21%), Query Frame = 0
BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 3.2e-36 Identity = 90/168 (53.57%), Postives = 110/168 (65.48%), Query Frame = 0
BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: Q28ZX3 (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=Pabp2 PE=3 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 2.4e-31 Identity = 78/163 (47.85%), Postives = 108/163 (66.26%), Query Frame = 0
BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A6J1CIL8 (polyadenylate-binding protein 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011703 PE=4 SV=1) HSP 1 Score: 426.4 bits (1095), Expect = 7.2e-116 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A6J1CJE1 (polyadenylate-binding protein 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011703 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 5.1e-114 Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0
BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A6J1FT42 (polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447055 PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 1.6e-107 Identity = 207/219 (94.52%), Postives = 213/219 (97.26%), Query Frame = 0
BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A1S3BYF0 (polyadenylate-binding protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494443 PE=4 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 4.7e-107 Identity = 207/218 (94.95%), Postives = 211/218 (96.79%), Query Frame = 0
BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A6J1J6L4 (polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483042 PE=4 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 3.9e-106 Identity = 202/218 (92.66%), Postives = 212/218 (97.25%), Query Frame = 0
BLAST of MS000260 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 ) HSP 1 Score: 273.9 bits (699), Expect = 1.1e-73 Identity = 154/218 (70.64%), Postives = 175/218 (80.28%), Query Frame = 0
BLAST of MS000260 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 ) HSP 1 Score: 256.1 bits (653), Expect = 2.5e-68 Identity = 151/254 (59.45%), Postives = 176/254 (69.29%), Query Frame = 0
BLAST of MS000260 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 255.4 bits (651), Expect = 4.2e-68 Identity = 145/217 (66.82%), Postives = 170/217 (78.34%), Query Frame = 0
BLAST of MS000260 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 252.7 bits (644), Expect = 2.7e-67 Identity = 150/215 (69.77%), Postives = 166/215 (77.21%), Query Frame = 0
BLAST of MS000260 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 252.7 bits (644), Expect = 2.7e-67 Identity = 150/215 (69.77%), Postives = 166/215 (77.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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