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MS000232 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGCCAGAAGTTTTGCGGTAATGATTTTGATCGCATTGTTGATCGGCTCCACAATCGCGCAATCGCCGTCGGCATCGCCGTCATTGTCTCCGAGCAAATCGCCGTCGAAGGCTCCGTCGGTTTCTCCGTCTATTAAGTCGCCGAAATCTTCTCCGGCGGCGGCTCCTACTCCGTCCGGTCTGAAGTCTCCTCCATCTCCTCCGGCTGCTTCGCCTTCTACTTCTCCGTCGTCATCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCGGCTCCCTCCGGAAACGGCGCCGCTTCGCTCTCGTTCTCGGTCTTCGGATCTGTGGCTGTGGTGCTATACGCCGCCGTTTTGATGATC ATGGCAGCCAGAAGTTTTGCGGTAATGATTTTGATCGCATTGTTGATCGGCTCCACAATCGCGCAATCGCCGTCGGCATCGCCGTCATTGTCTCCGAGCAAATCGCCGTCGAAGGCTCCGTCGGTTTCTCCGTCTATTAAGTCGCCGAAATCTTCTCCGGCGGCGGCTCCTACTCCGTCCGGTCTGAAGTCTCCTCCATCTCCTCCGGCTGCTTCGCCTTCTACTTCTCCGTCGTCATCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCGGCTCCCTCCGGAAACGGCGCCGCTTCGCTCTCGTTCTCGGTCTTCGGATCTGTGGCTGTGGTGCTATACGCCGCCGTTTTGATGATC ATGGCAGCCAGAAGTTTTGCGGTAATGATTTTGATCGCATTGTTGATCGGCTCCACAATCGCGCAATCGCCGTCGGCATCGCCGTCATTGTCTCCGAGCAAATCGCCGTCGAAGGCTCCGTCGGTTTCTCCGTCTATTAAGTCGCCGAAATCTTCTCCGGCGGCGGCTCCTACTCCGTCCGGTCTGAAGTCTCCTCCATCTCCTCCGGCTGCTTCGCCTTCTACTTCTCCGTCGTCATCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCGGCTCCCTCCGGAAACGGCGCCGCTTCGCTCTCGTTCTCGGTCTTCGGATCTGTGGCTGTGGTGCTATACGCCGCCGTTTTGATGATC MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVLYAAVLMI Homology
BLAST of MS000232 vs. NCBI nr
Match: XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida]) HSP 1 Score: 152.9 bits (385), Expect = 1.8e-33 Identity = 104/127 (81.89%), Postives = 111/127 (87.40%), Query Frame = 0
BLAST of MS000232 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 147.5 bits (371), Expect = 7.7e-32 Identity = 99/127 (77.95%), Postives = 111/127 (87.40%), Query Frame = 0
BLAST of MS000232 vs. NCBI nr
Match: XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata]) HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31 Identity = 99/127 (77.95%), Postives = 109/127 (85.83%), Query Frame = 0
BLAST of MS000232 vs. NCBI nr
Match: KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 143.7 bits (361), Expect = 1.1e-30 Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0
BLAST of MS000232 vs. NCBI nr
Match: XP_022992086.1 (classical arabinogalactan protein 1-like [Cucurbita maxima]) HSP 1 Score: 141.0 bits (354), Expect = 7.2e-30 Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 0
BLAST of MS000232 vs. ExPASy Swiss-Prot
Match: Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2) HSP 1 Score: 65.5 bits (158), Expect = 5.1e-10 Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = 0
BLAST of MS000232 vs. ExPASy TrEMBL
Match: A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 6.4e-32 Identity = 99/127 (77.95%), Postives = 109/127 (85.83%), Query Frame = 0
BLAST of MS000232 vs. ExPASy TrEMBL
Match: A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 3.5e-30 Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 0
BLAST of MS000232 vs. ExPASy TrEMBL
Match: A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 3.9e-29 Identity = 95/127 (74.80%), Postives = 104/127 (81.89%), Query Frame = 0
BLAST of MS000232 vs. ExPASy TrEMBL
Match: A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 3.9e-29 Identity = 97/127 (76.38%), Postives = 106/127 (83.46%), Query Frame = 0
BLAST of MS000232 vs. ExPASy TrEMBL
Match: A0A6J1J6X2 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111483108 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 5.1e-29 Identity = 97/127 (76.38%), Postives = 105/127 (82.68%), Query Frame = 0
BLAST of MS000232 vs. TAIR 10
Match: AT5G64310.1 (arabinogalactan protein 1 ) HSP 1 Score: 65.5 bits (158), Expect = 3.6e-11 Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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