Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCAGATCATCAAAACGGCGGCGTATAGCACCACAGCCACAGATCCGAAGACCGAGAACGAGAGCGAAGCGGCGCCGTTTCCGGAGGGAGCCGGAGCGTCAGCCGGCGGCGAGGAGATCGAGGAAGGAGAACTGGCCGGAGACGGAGATGACGACGGAGAAGTAGAAGGCGAAGCAGCCGGAGGAGATGGAGGAGACTTCAGACCGGACGGAGTAGGAGCCGCCGCCGGAGAAGATTTCGGCGACTTAATAGACGGAGAAACCGACGGAGCCTTCGACGGCGATTTGCTCGGAGAC mRNA sequence
TCTCAGATCATCAAAACGGCGGCGTATAGCACCACAGCCACAGATCCGAAGACCGAGAACGAGAGCGAAGCGGCGCCGTTTCCGGAGGGAGCCGGAGCGTCAGCCGGCGGCGAGGAGATCGAGGAAGGAGAACTGGCCGGAGACGGAGATGACGACGGAGAAGTAGAAGGCGAAGCAGCCGGAGGAGATGGAGGAGACTTCAGACCGGACGGAGTAGGAGCCGCCGCCGGAGAAGATTTCGGCGACTTAATAGACGGAGAAACCGACGGAGCCTTCGACGGCGATTTGCTCGGAGAC Coding sequence (CDS)
TCTCAGATCATCAAAACGGCGGCGTATAGCACCACAGCCACAGATCCGAAGACCGAGAACGAGAGCGAAGCGGCGCCGTTTCCGGAGGGAGCCGGAGCGTCAGCCGGCGGCGAGGAGATCGAGGAAGGAGAACTGGCCGGAGACGGAGATGACGACGGAGAAGTAGAAGGCGAAGCAGCCGGAGGAGATGGAGGAGACTTCAGACCGGACGGAGTAGGAGCCGCCGCCGGAGAAGATTTCGGCGACTTAATAGACGGAGAAACCGACGGAGCCTTCGACGGCGATTTGCTCGGAGAC Protein sequence
SQIIKTAAYSTTATDPKTENESEAAPFPEGAGASAGGEEIEEGELAGDGDDDGEVEGEAAGGDGGDFRPDGVGAAAGEDFGDLIDGETDGAFDGDLLGD
Homology
BLAST of MS000231 vs. NCBI nr
Match:
KAG6600240.1 (hypothetical protein SDJN03_05473, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 104.0 bits (258), Expect = 7.6e-19
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 0
Query: 8 AYSTTATDPKTENESEAAPFPEGAGASAGGEEIEEGELAGDGDDDGEVEGEAAGGDGGDF 67 AYST ATDP E E EAA P+GAGASAGGE+I++GE G+GD D GEAAGGDGGDF Sbjct: 2 AYSTVATDPNIEKEIEAAALPDGAGASAGGEDIDDGE--GEGDRD----GEAAGGDGGDF 61 Query: 68 RPDGVGAAAGEDFGDLIDGETDGAFDGDLLGD 100 + GVGAAAGEDFGD DGE DGA DGDL+GD Sbjct: 62 KDAGVGAAAGEDFGDSTDGEIDGALDGDLVGD 87
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAG6600240.1 7.6e-19 70.65 hypothetical protein SDJN03_05473, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
T C T C A G A T C A T C A A A A C G G C G G C G T A T A G C A C C A C A G C C A C A G A T C C G A A G A C C G A G A A C G A G A G C G A A G C G G C G C C G T T T C C G G A G G G A G C C G G A G C G T C A G C C G G C G G C G A G G A G A T C G A G G A A G G A G A A C T G G C C G G A G A C G G A G A T G A C G A C G G A G A A G T A G A A G G C G A A G C A G C C G G A G G A G A T G G A G G A G A C T T C A G A C C G G A C G G A G T A G G A G C C G C C G C C G G A G A A G A T T T C G G C G A C T T A A T A G A C G G A G A A A C C G A C G G A G C C T T C G A C G G C G A T T T G C T C G G A G A C 50 100 150 200 250 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 41..59
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..99
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..19
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS000231.1 MS000231.1 mRNA