MELO3C035758.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C035758.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr12: 26094516 .. 26097248 (-)
RNA-Seq ExpressionMELO3C035758.jh1
SyntenyMELO3C035758.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCGGAGGAGGAAGCAGAGATTTAGAATTCCCTTCTCCATTTCGTACTATGAGACCCATTGCAAGTCCCCATGAAGTATGTTCTTCAAGATGACAATGTATAAACCAAACTCCAGGATTATCCGCCTTAATTCTGATCGCTGCCCACCCTCCCCTCGGCACCGCCACCGTGTTTCTTTCCGGTGGATCAACCAGATTGTACTTCGCCGGATCCCTACCCGCGTTGAAATTCCCAAATCCCCTGCCTACAACGAAGAAATTGTGCCCATGAACATGGATCGGATGATTCTCCACACTAAGAAAATTCGTGCCCTGAAACACGATTTCCAGATTTGTTCCATATGGAACCGCCAAAAGCTTTGTCCCAAATTCTGTGTTCATGTTTTTGGTTAATGGGTTTACGCCAGTATAATCAAAAACCGTGCTGGGTTTTTCTGGAAAATCAGTGGAGTACGAATTGGTAGCGATTTTTCTATAATGGGATTCCAATATGGACGAATCCGGTCGAACGAAGGATTGATTGTTCATAGAAGCGAAAAATCTCTTTCCGTTCAAACCCTTGCAGGTTTTCCTAGATGGGCAGTTCTGGAGATTGAGGCTTATGGTAACGAACACTCTTTTGTGAACTGTTTTAGGAACATTACAAGGGTACAGGGGAGAATTAAGGCTACGGAGTTTGTTGGAAAATGCAGTGGCAAAGGCTGTATCCTTCATATCGGGGAGGTTTTCAGGTATTTGATTAGATGGGAATTTTGTTTTTCGTTTAAGTTTATTCATTTTCCTGCTCTTGTATCTTAAGAAGCCAATGGAGGTGGAGTTGTTGAAGGGGAAACTTGAAGTTACATAGGGTGTGATTGCCATTGGGAAGAGGATTCCAGAGGAGTGGTCTGGAATTTGAATTTGATCTGTATTGAGTAGAAGAGTGGTGGTTTGGCCGGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAATCTCCACCACTGTCAATGTATGGTTGGCTATGGCAAAGAAAAGTTCATCGTTGAGTGCTCCATTAATTACTCTCAGCAGGTAAGTTTTCCCCCTTTCTACTGTTGAAATGAATGTATCTGGCATTGAACATTGTGGTGATTGAAAATTATATTTCCTGTGTGTTTGATTTTGATATAACAAAATGAAAGTTTAGAAAGTGGAGTGTGTAGTACTTACCTCTGCTAGAGCAAGGATAAAGAGGTCCCGGCAAGCCATTAATGGTATAGGCATCAGAATTGTTAGGTCCACCTCCAGATTTTAGCATCTCATTTTCAACTTCTTCCACATCCCCATTCCACCATTCACCTGCATGTGGGGTCATGTTAAAATAACTGTTCATCACAAATCATAAATTTGCATGTGAAAAGTTACATCTTTTGATTATATCATAAAGAATGAAAGTTATTTAAAAATTTTCAAAATCACTTTTGATTATATCCAACCAATACACAATCAAAATTCGAAAGTGTTCTTATACATTAAAAGTGACATTTTACCCTTTCAAAAGTCATCATAAACTCACTTGGGATGAACTAGGGACTTACCAAAAATAAGAGGAATCCCAGCTTCAATTGGAAAAGTGGAGAATGGGTAAGGCATGCGAGGGTAAATGATGAAGGCACCATGCACAGAAGCACGTTGCCATGAGTAATGTGCGTGCCACCACAGTGTCCCTCTTTGGTCAATCACTGAGAATTTGTATGTGTATGATTCTCCTGATCTTATAGGACACTGTGTTATGTAAGCCGGACCATCTGCCCATCCTGTTCTTAATTGCTTGACCCCATGCCTGCAGATCATCAAATTTGTTAGAGATCTTATGGGGTTACGTTTTGTTTTACTTACTATTTTCAAAAAAATGCTCGTAGATTATATTTTACTAGCTATAACATGTTAGAAACTTACCAATGAATAGTTGTGTTTTCATTTATGCAATTATTGACCTTGATTTCGACTGTATCACCTTCATGAACTGCAATGGTTGGCCCTGGATACTGTCCATTCACAGTTAGAAGTTGCTTTGTATGGCACAATCTTGTCACCTTCTTCCACTCCACCTTTATTGGAAAAAAAACGATACTTTTCAGTTATAAATGACAATAATCACACAGAAACATCCATATATGTTAAGAATAAAATATATAGCTGAAAATATGCAACCAAATAGGTTTTCCAGGCTCGTATTATTTCATTTTTTTTTCTTGTTGCTTTTATCAAAAAAAGAAAAAAGAAACTTTCTTGTTTAAGCTTACATTAAACTGAAATCGTCGAATGACAGGAGAAGCAAAGCTGAATGGCACAAAACCAGCAAGGAGGATGCTTATGAATATGACAAGCAACATCATCCGACACTGCTGGCTGAGGCTCTTCATTGTCATAAAAAATTTTAACTCTTCAAAACAAGTTAGCTAACAATTTATATATATTCTACAAGAAGTAGTTGCACTCTTTTTATAGTTTTTTGCTCTCTTCGAACTCACATTCTGCAGTCATTGGCACAGTCTGTGAATCCTTTTGATATTGTGGTGAGTGGTGCTTTGTTGTGGGGGTTGGTGCGTAAGTGGGGTTAATTGCTGATATCAGTATGTGGTTAATGTCAATTGGTCGTTTTTTAAACTAACGCTAAGCAGATTAGGTGTTTGGCTGCTGTATATACACACATTATACAACCACTGATGAAATATTATTGATTCCCTTTTGTCA

mRNA sequence

ATCCGGAGGAGGAAGCAGAGATTTAGAATTCCCTTCTCCATTTCGTACTATGAGACCCATTGCAAGTCCCCATGAAGTATGTTCTTCAAGATGACAATGTATAAACCAAACTCCAGGATTATCCGCCTTAATTCTGATCGCTGCCCACCCTCCCCTCGGCACCGCCACCGTGTTTCTTTCCGGTGGATCAACCAGATTGTACTTCGCCGGATCCCTACCCGCGTTGAAATTCCCAAATCCCCTGCCTACAACGAAGAAATTGTGCCCATGAACATGGATCGGATGATTCTCCACACTAAGAAAATTCGTGCCCTGAAACACGATTTCCAGATTTGTTCCATATGGAACCGCCAAAAGCTTTGTCCCAAATTCTGTGTTCATGTTTTTGGTTAATGGGTTTACGCCAGTATAATCAAAAACCGTGCTGGGTTTTTCTGGAAAATCAGTGGAGTACGAATTGGTAGCGATTTTTCTATAATGGGATTCCAATATGGACGAATCCGGTCGAACGAAGGATTGATTGTTCATAGAAGCGAAAAATCTCTTTCCGTTCAAACCCTTGCAGGTTTTCCTAGATGGGCAGTTCTGGAGATTGAGGCTTATGGTAACGAACACTCTTTTGTGAACTGTTTTAGGAACATTACAAGGGTACAGGGGAGAATTAAGGCTACGGAGTTTGTTGGAAAATGCAGTGGCAAAGGCTGTATCCTTCATATCGGGGAGGTTTTCAGGTATTTGATTAGATGGGAATTTTGTTTTTCGTTTAAGTTTATTCATTTTCCTGCTCTTGTATCTTAAGAAGCCAATGGAGGTGGAGTTGTTGAAGGGGAAACTTGAAGTTACATAGGGTGTGATTGCCATTGGGAAGAGGATTCCAGAGGAGTGGTCTGGAATTTGAATTTGATCTGTATTGAGTAGAAGAGTGGTGGTTTGGCCGGGAGCTATCATAATGGCTGTGGTATTGAAGGGTTTTGTGTATGCAGCATCAATCTCCACCACTGTCAATGTATGGTTGGCTATGGCAAAGAAAAGTTCATCGTTGAGTGCTCCATTAATTACTCTCAGCAGGAGAAGCAAAGCTGAATGGCACAAAACCAGCAAGGAGGATGCTTATGAATATGACAAGCAACATCATCCGACACTGCTGGCTGAGGCTCTTCATTGTCATAAAAAATTTTAACTCTTCAAAACAAGTTAGCTAACAATTTATATATATTCTACAAGAAGTAGTTGCACTCTTTTTATAGTTTTTTGCTCTCTTCGAACTCACATTCTGCAGTCATTGGCACAGTCTGTGAATCCTTTTGATATTGTGGTGAGTGGTGCTTTGTTGTGGGGGTTGGTGCGTAAGTGGGGTTAATTGCTGATATCAGTATGTGGTTAATGTCAATTGGTCGTTTTTTAAACTAACGCTAAGCAGATTAGGTGTTTGGCTGCTGTATATACACACATTATACAACCACTGATGAAATATTATTGATTCCCTTTTGTCA

Coding sequence (CDS)

ATGGGATTCCAATATGGACGAATCCGGTCGAACGAAGGATTGATTGTTCATAGAAGCGAAAAATCTCTTTCCGTTCAAACCCTTGCAGGTTTTCCTAGATGGGCAGTTCTGGAGATTGAGGCTTATGGTAACGAACACTCTTTTGTGAACTGTTTTAGGAACATTACAAGGGTACAGGGGAGAATTAAGGCTACGGAGTTTGTTGGAAAATGCAGTGGCAAAGGCTGTATCCTTCATATCGGGGAGGTTTTCAGGTATTTGATTAGATGGGAATTTTGTTTTTCGTTTAAGTTTATTCATTTTCCTGCTCTTGTATCTTAA

Protein sequence

MGFQYGRIRSNEGLIVHRSEKSLSVQTLAGFPRWAVLEIEAYGNEHSFVNCFRNITRVQGRIKATEFVGKCSGKGCILHIGEVFRYLIRWEFCFSFKFIHFPALVS
Homology
[Close]
BLAST of MELO3C035758.jh1 vs. NCBI nr
Match: KAG7012142.1 (hypothetical protein SDJN02_24894, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115 bits (289), Expect = 1.96e-28
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0 

Query: 1   MGFQYGRIRSNEGLIVHRSEKSLSVQTLAGFPRWAVLEIEAYGNEHSFVNCFRNITRVQG 60
           M FQYG+ R+NEGLIVHRS+++L VQTLA FPRWA+L++EAY  ++SF+NCFRNIT V  
Sbjct: 128 MRFQYGQSRTNEGLIVHRSKEALPVQTLARFPRWAILKVEAYSYDNSFMNCFRNITWVHR 187

Query: 61  RIKATEFVGKCSGKGCILHIGEVFRYLIRWEFC 93
           R KA EFV KC  K  ILH  EVF   I +  C
Sbjct: 188 RSKAAEFVQKCRSKRSILHFWEVFS--INFHHC 218

[Close]
BLAST of MELO3C035758.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LT31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042715 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 5.16e-56
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 0 

Query: 1  MGFQYGRIRSNEGLIVHRSEKSLSVQTLAGFPRWAVLEIEAYGNEHSFVNCFRNITRVQG 60
          MGFQYGR+RSNEGLIVHRSEKSLSVQTLAGFPRWA+LEIEAYGNEHSFVNCFRNITRVQG
Sbjct: 1  MGFQYGRVRSNEGLIVHRSEKSLSVQTLAGFPRWAILEIEAYGNEHSFVNCFRNITRVQG 60

Query: 61 RIKATEFVGKCSGKGCILHIGEVFRYLIRW 90
          RIKATEF GKCSGKGCILHIGEVFR ++ W
Sbjct: 61 RIKATEFAGKCSGKGCILHIGEVFRRVVVW 90

The following BLAST results are available for this feature:
BLAST of MELO3C035758.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012142.11.96e-2861.29hypothetical protein SDJN02_24894, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of MELO3C035758.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035758.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT315.16e-5692.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042715 PE=4 SV=1[more]
BLAST of MELO3C035758.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035758.jh1.t1MELO3C035758.jh1.t1mRNA