MELO3C035691 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035691
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr12: 18701416 .. 18702404 (-)
RNA-Seq Expression	MELO3C035691
Synteny	MELO3C035691

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTTCATCGAGACTACTTAAGCAATATTGGACTAAAGAGGAAGAGGCAGGCCTCATCGAGCGTCTCGTGGAGTTAGTCAATGCTGTGGGTGGAGGTTCGGCAACGAGACGTTTCATCCTTGGTACCTAAATCAGCTGGCGAGAATTATGGCCTTCAAGATCCCAGGTTCTAACGTCCATGCTTCAACGATCGATAGCTGAATAAAATTGTTGAAGAGAATGTTTCATGCAATTGCGGAGATGCATGACCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTAGAGAAAGAAGTCTTCGACGATTGGGTCAAGGTGCGTTACTAGTCATTTGAACAATTACTGTAGTATATTTTAAAAAAATGGACTAACAATTTATTATTGCACTTATACAGAGTCATCCGGCGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCACTATGACGAACTGTCGTACGTGTCTGGCAAAGATCGTGCAACGGGAGGCCGGGTTGAGACTTTTACGGACGTTGGGTCAAACGATCCTACTGGGTACGATGCATTTGCCACTGACGCTGCATTAGATATGGACTTCCGGCCAATGTACAGTCAGAGATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAGCTGCTGGGGTAAGTAAAGGTAGGTATGTTTCGAGCGGGTCTAAGCGAAAACGTGGAGGACAGGCCGTAGACAGTGGGGACATAATTCGCACTGCGATTGAGTACGAAAATGAACAACTAAACCGCATTGCTAAATGGCTTGTCCTACAACGTCAAGACGCAAGCCAAACATGTCAAGAGGTTGTCGACAGTTGGAGGCCATCCCTGAGCTGACATTGATGGATAGGTGTCGCTTAATGTGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGACGTTCCCGACAATATGAAGTACCCATACTGCACCATCATTCTTGAAGAAAACTGA

mRNA sequence

ATGGCAAGTTCATCGAGACTACTTAAGCAATATTGGACTAAAGAGGAAGAGGCAGGCCTCATCGAGCGTCTCGTGGAAGTCATCCGGCGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCACTATGACGAACTGTCGTACGTGTCTGGCAAAGATCGTGCAACGGGAGGCCGGGTTGAGACTTTTACGGACGTTGGGTCAAACGATCCTACTGGGTACGATGCATTTGCCACTGACGCTGCATTAGATATGGACTTCCGGCCAATGTACAGTCAGAGATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAGCTGCTGGGGTAAGTAAAGGTAGGTATGTTTCGAGCGGGTCTAAGCGAAAACGTGGAGGACAGGCCGTAGACAGTGGGGACATAATTCGCACTGCGATTGAGTACGAAAATGAACAACTAAACCGCATTGCTAAATGGCTTGTCCTACAACGTCAAGACGCAAGCCAAACATGTCAAGAGGTTGTCGACAGTTGGAGGCCATCCCTGAGCTGACATTGATGGATAGGTGTCGCTTAATGTGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGACGTTCCCGACAATATGAAGTACCCATACTGCACCATCATTCTTGAAGAAAACTGA

Coding sequence (CDS)

ATGGACTTCCGGCCAATGTACAGTCAGAGATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAGCTGCTGGGGTAAGTAAAGGTAGGTATGTTTCGAGCGGGTCTAAGCGAAAACGTGGAGGACAGGCCGTAGACAGTGGGGACATAATTCGCACTGCGATTGAGTACGAAAATGAACAACTAAACCGCATTGCTAAATGGCTTGTCCTACAACGTCAAGACGCAAGCCAAACATGTCAAGAGGTTGTCGACAGTTGGAGGCCATCCCTGAGCTGA

Protein sequence

MDFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQLNRIAKWLVLQRQDASQTCQEVVDSWRPSLS

Homology

[Close]

BLAST of MELO3C035691 vs. NCBI nr
Match: KAA0063768.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05520.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 4.1e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MDFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENE 60
           MDFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENE
Sbjct: 75  MDFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENE 134

Query: 61  QLNRIAKWLVLQRQDASQTCQEVVDSWRPSLS 93
           QLNRIAKWLVLQRQDASQTCQEVVDSWRPSLS
Sbjct: 135 QLNRIAKWLVLQRQDASQTCQEVVDSWRPSLS 166

[Close]

BLAST of MELO3C035691 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 4.9e-28
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 2   DFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQ 61
           DF+PMYS+ LNMSPDELMGTR A VS+GRYVSSGSK+KRGG  +DSGDI+RTAIEY NEQ
Sbjct: 142 DFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQ 201

Query: 62  LNRIAKWLVLQRQDASQTCQEVV 85
           LNRIA+W VLQRQDA+QT QEVV
Sbjct: 202 LNRIAEWHVLQRQDATQTRQEVV 224

[Close]

BLAST of MELO3C035691 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 5.4e-27
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 2   DFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQ 61
           DF+PMYSQ LNMSPDELMG R A VS+GRYVSSGSKRKR GQA DSGD++RTAIEY NEQ
Sbjct: 252 DFQPMYSQGLNMSPDELMGIRNAQVSEGRYVSSGSKRKRKGQATDSGDVLRTAIEYGNEQ 311

Query: 62  LNRIAKWLVLQRQDASQTCQEVV 85
           LN IA+W +LQRQDASQT QEVV
Sbjct: 312 LNCIAEWPILQRQDASQTRQEVV 334

[Close]

BLAST of MELO3C035691 vs. NCBI nr
Match: KAA0038320.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-26
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 2   DFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQ 61
           D  PMYSQ LNMSPDEL+GTR   V++GRY+SSGSK KRGGQA DSGD+ RTAIEY NEQ
Sbjct: 67  DTTPMYSQGLNMSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQ 126

Query: 62  LNRIAKWLVLQRQDASQTCQEVV 85
           LNRIA+W VLQRQDASQT QEVV
Sbjct: 127 LNRIAEWPVLQRQDASQTHQEVV 149

[Close]

BLAST of MELO3C035691 vs. NCBI nr
Match: TYK10954.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 7.8e-26
Identity = 66/83 (79.52%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 2   DFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQ 61
           DF PMYSQ LNMSPD+LMGTR A VS+ R VSSGSKRKR G A DSGDI+RTAIEY NEQ
Sbjct: 142 DFPPMYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQ 201

Query: 62  LNRIAKWLVLQRQDASQTCQEVV 85
           LNRIA+W VLQRQ+ASQT QEVV
Sbjct: 202 LNRIAEWPVLQRQNASQTRQEVV 224

[Close]

BLAST of MELO3C035691 vs. ExPASy TrEMBL
Match: A0A5D3C2D3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00220 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MDFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENE 60
           MDFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENE
Sbjct: 75  MDFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENE 134

Query: 61  QLNRIAKWLVLQRQDASQTCQEVVDSWRPSLS 93
           QLNRIAKWLVLQRQDASQTCQEVVDSWRPSLS
Sbjct: 135 QLNRIAKWLVLQRQDASQTCQEVVDSWRPSLS 166

[Close]

BLAST of MELO3C035691 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.4e-28
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 2   DFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQ 61
           DF+PMYS+ LNMSPDELMGTR A VS+GRYVSSGSK+KRGG  +DSGDI+RTAIEY NEQ
Sbjct: 142 DFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQ 201

Query: 62  LNRIAKWLVLQRQDASQTCQEVV 85
           LNRIA+W VLQRQDA+QT QEVV
Sbjct: 202 LNRIAEWHVLQRQDATQTRQEVV 224

[Close]

BLAST of MELO3C035691 vs. ExPASy TrEMBL
Match: A0A5A7SXX8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00320 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-27
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 2   DFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQ 61
           DF+PMYSQ LNMSPDELMG R A VS+GRYVSSGSKRKR GQA DSGD++RTAIEY NEQ
Sbjct: 252 DFQPMYSQGLNMSPDELMGIRNAQVSEGRYVSSGSKRKRKGQATDSGDVLRTAIEYGNEQ 311

Query: 62  LNRIAKWLVLQRQDASQTCQEVV 85
           LN IA+W +LQRQDASQT QEVV
Sbjct: 312 LNCIAEWPILQRQDASQTRQEVV 334

[Close]

BLAST of MELO3C035691 vs. ExPASy TrEMBL
Match: A0A5A7T4M9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001900 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 2   DFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQ 61
           D  PMYSQ LNMSPDEL+GTR   V++GRY+SSGSK KRGGQA DSGD+ RTAIEY NEQ
Sbjct: 67  DTTPMYSQGLNMSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQ 126

Query: 62  LNRIAKWLVLQRQDASQTCQEVV 85
           LNRIA+W VLQRQDASQT QEVV
Sbjct: 127 LNRIAEWPVLQRQDASQTHQEVV 149

[Close]

BLAST of MELO3C035691 vs. ExPASy TrEMBL
Match: A0A5A7VBC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00070 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 66/83 (79.52%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 2   DFRPMYSQRLNMSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQ 61
           DF PMYSQ LNMSPD+LMGTR A VS+ R VSSGSKRKR G A DSGDI+RTAIEY NEQ
Sbjct: 142 DFPPMYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQ 201

Query: 62  LNRIAKWLVLQRQDASQTCQEVV 85
           LNRIA+W VLQRQ+ASQT QEVV
Sbjct: 202 LNRIAEWPVLQRQNASQTRQEVV 224

The following BLAST results are available for this feature:

BLAST of MELO3C035691 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035691 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063768.1	4.1e-43	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK05520.1 retrotransposon p...	[more]
KAA0048374.1	4.9e-28	80.72	retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p...	[more]
KAA0035413.1	5.4e-27	80.72	retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p...	[more]
KAA0038320.1	2.1e-26	78.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK10954.1	7.8e-26	79.52	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035691 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2D3	2.0e-43	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZA5	2.4e-28	80.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SXX8	2.6e-27	80.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T4M9	1.0e-26	78.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VBC5	3.8e-26	79.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C035691 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035691.1	MELO3C035691.1	mRNA