MELO3C035659 (gene) Melon (DHL92) v4

Overview
NameMELO3C035659
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionsynaptotagmin-5 isoform X1
Locationchr12: 16339825 .. 16341199 (+)
RNA-Seq ExpressionMELO3C035659
SyntenyMELO3C035659
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTTGTCGCTTAGTTTCTAACACGTGGATGATGATTTTCATCGATTTGATTTAATTTGCTTCTCTATCTCTCTTTAATTTACAGCCCAGTACTCCACTTGAGCACTATGAATGGTTAAATAAGCCATTGATGGAGATTTGGCCTAACTTCATCAACCCAAAACTTTCATTAAAGTTCTCTACTATTGCTGAGGTGAATCTATTTTTCTTCTTCTGCAATGTCTGACTTTTTTTTCAGCAATTTTTTTTTTAGGTGGACTTGGCTGTAACTGAACTCAATATACTCAATATTAACCTTACAATCTTTGCCTAAAGTTGTTTCAATGGTTATTTATCGTGTTGCTATTTTAATTAGTTTCACTATTAGATGCTTATTTTGTCTTCATAGACAAATGCAGGAAGGTCGATAAAATATATAGCTTTTTGGATTTCTAATTTGAGAAAATGTGAAAAATCAAATAAATAGAGAAAAGAGTGGAACTGACTGATCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTTGGTTCAATTTTTATGAGTTAAATCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAATAAAGGTACTCTCCTTGTACCTTAGTTGTGCTACCTAGGTTGTCAGAAGAAATTTTGCAGTGAACACTTCAATATTTTGCAGCTAACAGTGAAGCTTATTGTTAAAAGAGTTGCAATTTTCTAATGGCTCACATAGCTTTTTTTGTTACACATGTACCAAAGTAATTGTGTAACCTTTATTCTAAGTTCAATTCACACTTCTGAAATAATATAGAAACTATTGGTCTATTTGCGATCGACTACACGAAGGGTAGTGGTGCATAGAAGAAATAGGTAAGCGTGGTTTATTTTCCCAATCGTAAACATAAACTATTTCCTTCTTTTTTTTCTTTCTGGTGCATAGTGTCCAAAGCAGCTATAAAATTATCAACCGTAGTGTCTATGAGTTCTACCGTATTTCTTCATGTGATAAATAGTTTTTGTATTAAAGAGGTACATGTTTCACTTATATTTGCAACAGTTATAGCATTTTACCCTATGTAGTCCATGTTTTTATTTCATTATTCTCTCTTCTTTGTCTTCTTCTAGGTATTGATACCGGTCTTTATTGAATTTGTTAGCCATAATGGAAACATAATAGTTTCCTTGTGTTTAAGTTTATTTTGATGTGGAGTCTGTCTACGTAATTATGTTTTGAATTACTTAATGAATTTTAATTAAGGTTCATCTTTGGCAAATTTGCAGGTATTTGAAGAATCTGTGGACCATGAGATCAATTATCAAGTCCATTTATACTTTAATTTGATTAGATTAGGTCACTCATACATGTATTACAGTTAA

mRNA sequence

GTTTTTGTCGCTTAGTTTCTAACACGTGGATGATGATTTTCATCGATTTGATTTAATTTGCTTCTCTATCTCTCTTTAATTTACAGCCCAGTACTCCACTTGAGCACTATGAATGGTTAAATAAGCCATTGATGGAGATTTGGCCTAACTTCATCAACCCAAAACTTTCATTAAAGTTCTCTACTATTGCTGAGGTGAATCTATTTTTCTTCTTCTGCAATGTCTGACTTTTTTTTCAGCAATTTTTTTTTTAGGTGGACTTGGCTGTAACTGAACTCAATATACTCAATATTAACCTTACAATCTTTGCCTAAAGTTGTTTCAATGGTTATTTATCGTGTTGCTATTTTAATTAGTTTCACTATTAGATGCTTATTTTGTCTTCATAGACAAATGCAGGAAGGTCGATAAAATATATAGCTTTTTGGATTTCTAATTTGAGAAAATGTGAAAAATCAAATAAATAGAGAAAAGAGTGGAACTGACTGATCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTTGGTTCAATTTTTATGAGTTAAATCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAATAAAGGTATTTGAAGAATCTGTGGACCATGAGATCAATTATCAAGTCCATTTATACTTTAATTTGATTAGATTAGGTCACTCATACATGTATTACAGTTAA

Coding sequence (CDS)

ATGATTCTACATGAAGATACAGGAACTCTTTGGTTCAATTTTTATGAGTTAAATCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAATAAAGGTATTTGAAGAATCTGTGGACCATGAGATCAATTATCAAGTCCATTTATACTTTAATTTGATTAGATTAGGTCACTCATACATGTATTACAGTTAA

Protein sequence

MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKVFEESVDHEINYQVHLYFNLIRLGHSYMYYS
Homology
[Close]
BLAST of MELO3C035659 vs. NCBI nr
Match: XP_038897841.1 (synaptotagmin-5 isoform X1 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 361 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 394

[Close]
BLAST of MELO3C035659 vs. NCBI nr
Match: XP_031735944.1 (uncharacterized protein LOC101204113 isoform X2 [Cucumis sativus] >KGN63829.2 hypothetical protein Csa_014036 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 371 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 404

[Close]
BLAST of MELO3C035659 vs. NCBI nr
Match: XP_008453398.1 (PREDICTED: uncharacterized protein LOC103494128 isoform X2 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 197 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 230

[Close]
BLAST of MELO3C035659 vs. NCBI nr
Match: XP_038897850.1 (synaptotagmin-5 isoform X2 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 361 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 394

[Close]
BLAST of MELO3C035659 vs. NCBI nr
Match: XP_004138346.1 (uncharacterized protein LOC101204113 isoform X1 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 371 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 404

[Close]
BLAST of MELO3C035659 vs. ExPASy TrEMBL
Match: A0A5D3DY04 (Synaptotagmin-5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00660 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 361 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 394

[Close]
BLAST of MELO3C035659 vs. ExPASy TrEMBL
Match: A0A0A0LS29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G023610 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 371 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 404

[Close]
BLAST of MELO3C035659 vs. ExPASy TrEMBL
Match: A0A1S3BXB4 (synaptotagmin-5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494128 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 361 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 394

[Close]
BLAST of MELO3C035659 vs. ExPASy TrEMBL
Match: A0A1S3BVL0 (uncharacterized protein LOC103494128 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494128 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NPSNVKYDYLASCE+K+
Sbjct: 197 MILHEDTGTLRFNLYESNPSNVKYDYLASCEVKM 230

[Close]
BLAST of MELO3C035659 vs. ExPASy TrEMBL
Match: A0A6J1KIU5 (synaptotagmin-5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496125 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-07
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILHEDTGTL FN YE NP++VKYDYLASCE+K+
Sbjct: 356 MILHEDTGTLRFNLYESNPNHVKYDYLASCEVKM 389

[Close]
BLAST of MELO3C035659 vs. TAIR 10
Match: AT3G18370.1 (C2 domain-containing protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-08
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 1   MILHEDTGTLWFNFYELNPSNVKYDYLASCEIKV 35
           MILH++TGTL FN YE NP +V+YD LASCE+K+
Sbjct: 362 MILHDNTGTLKFNLYENNPGSVRYDSLASCEVKM 395

The following BLAST results are available for this feature:
BLAST of MELO3C035659 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035659 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897841.11.1e-0785.29synaptotagmin-5 isoform X1 [Benincasa hispida][more]
XP_031735944.11.1e-0785.29uncharacterized protein LOC101204113 isoform X2 [Cucumis sativus] >KGN63829.2 hy... [more]
XP_008453398.11.1e-0785.29PREDICTED: uncharacterized protein LOC103494128 isoform X2 [Cucumis melo][more]
XP_038897850.11.1e-0785.29synaptotagmin-5 isoform X2 [Benincasa hispida][more]
XP_004138346.11.1e-0785.29uncharacterized protein LOC101204113 isoform X1 [Cucumis sativus][more]
BLAST of MELO3C035659 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DY045.5e-0885.29Synaptotagmin-5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A0A0LS295.5e-0885.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G023610 PE=4 SV=1[more]
A0A1S3BXB45.5e-0885.29synaptotagmin-5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494128 PE=4 SV=1[more]
A0A1S3BVL05.5e-0885.29uncharacterized protein LOC103494128 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1KIU54.7e-0779.41synaptotagmin-5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496125 PE=4... [more]
BLAST of MELO3C035659 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G18370.13.2e-0867.65C2 domain-containing protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035659.1MELO3C035659.1mRNA