MELO3C035596.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C035596.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	traB domain-containing protein
Location	chr12: 12658241 .. 12659949 (+)
RNA-Seq Expression	MELO3C035596.jh1
Synteny	MELO3C035596.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGGAGGATGGATGGATGGATGGCTGCCTTATTCTTACTACTCTCTTCTTATGTGTTAGTTTGGTCAAATCTCACTCCTACCCCCCTCTATTTCCTATTTTCTCTCTCTGCTGCATTATTCTGTCTCCCTCTCCTCTCCATTTTGAATATAGGGCATTTACCATTGTCATTCATCCTTCAAATGATGTGGTTGGCCGAAACTCAAATGACTTTTGGTCAAATAGTATTAACCTTACTTTGCCTTGGGAAGTCGAAAGTTCAATCCAAAGTCTCCTTCTTGTTGGGATTATTTTTCCTTTTACAACACACAAAGAAAGATTAAAAATAATTCTTATTTTGGAAAAGCCTAAAGCTACGATGTCGTAGATTTTTATTCGACGATCCTTGAGATGCATTGTGCAATCTAGTGAGCACCTACGTATTTCTTTTTAAAATAAAGTTGATGTGGTTAAGAATGAGGTTTTAGTTTTGAGTAACATCAGAAATGGTTCTTAGTCTCTTGATAAAAAATATTGATATGTTTGACATTTGTTTACTACTCTAATCATGAGAGTTTTATATATAGCTGTTGAATTTTCTTGAGTAAACAATTTGTTTTTTTTTTTGTTTTTGGTTTTTGAAAGTTAAGCTTAAAAGCACTTCTATCTTTAATTTTTTTGTTTTGTTATCTGTTTTTTACTATTTTTTTCCAAAAGTTAAGCCAAATTTTAAAAATTATTTTCGAACTGTCCAAATCTCGGAGTATCGAATTTATAATAATTTGGGTGTTGATTGAGTGGTTAGTCGTGGATTAGCTCTTCTTATTCATTTTGGAATTCAAAATTTTAACTTTTACTTGGTGAAACCTTTTTTAAGTAGAATTTTTTATTTTAACTGAGACGAAAATACCCTTTCTGTAAAGTTTTTACTTTCTACCCAATTAAGTTTTGGGTTTTATAATCTGTTGGATCTTCCCTTCAGTTCGACTTTTACAAATATGATTATGTATAAAGATACCATTTGTGTTTTTTCCTCTATATGATTGCTTCTTTTACCTATGAACCTTGTTTACTAACATTTGAAGAAAGACCATAATCAAAGCATATCAATTTTTGTTGAAGTTCAAATCAATACCTGTATCATATACTTCATGGTGTTGGAATTATCATTGTGTTGTGATTAATTTGCTGCTTCAGGAATCCGATGGAAATGGTAGTTCTTTGCAGCTCTATGAGAAGCTTAGTTTTTCTTATTCATCCCTCCTTCAACCTCTCATTCATGAACGAGATACCGTAAGTGCAATCCTACAATGCATTTTCAGATATTTTTCTTATCTATGTGAAAGAGAGAAAGAGTCTAATATCTCTCTTGATTTTCATGGTTAGGTTCCGCATTTGTTTTTGCAATCACCATTTTTCAATTCAACATTCACAATTACAAAGTGCTTAATATAGTTGTATTTGTAGCACCTTGCATTGTCTCTAAAGTGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTTGAGGTGATTGGAAGAGGCCATATGAACGGTGTCATTTACGCAATAACATCGGACCAAAGAAACTTACGATTTCGAGACCTTGCAGGTAAGAAAGCTAGAGAAGGTAATTCCAATGGCTTTGTTAGCAATCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTGTGGGTTTTATATGAACAATTAAAATAA

mRNA sequence

ATGGGATTGGAGGATGGATGGATGGATGGCTGCCTTATTCTTACTACTCTCTTCTTATGTGAATCCGATGGAAATGGTAGTTCTTTGCAGCTCTATGAGAAGCTTAGTTTTTCTTATTCATCCCTCCTTCAACCTCTCATTCATGAACGAGATACCCACCTTGCATTGTCTCTAAAGTGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTTGAGGTGATTGGAAGAGGCCATATGAACGGTAAGAAAGCTAGAGAAGGTAATTCCAATGGCTTTGTTAGCAATCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTGTGGGTTTTATATGAACAATTAAAATAA

Coding sequence (CDS)

ATGGGATTGGAGGATGGATGGATGGATGGCTGCCTTATTCTTACTACTCTCTTCTTATGTGAATCCGATGGAAATGGTAGTTCTTTGCAGCTCTATGAGAAGCTTAGTTTTTCTTATTCATCCCTCCTTCAACCTCTCATTCATGAACGAGATACCCACCTTGCATTGTCTCTAAAGTGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTTGAGGTGATTGGAAGAGGCCATATGAACGGTAAGAAAGCTAGAGAAGGTAATTCCAATGGCTTTGTTAGCAATCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTGTGGGTTTTATATGAACAATTAAAATAA

Protein sequence

MGLEDGWMDGCLILTTLFLCESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMNGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK

Homology

[Close]

BLAST of MELO3C035596.jh1 vs. NCBI nr
Match: XP_008439166.1 (PREDICTED: traB domain-containing protein [Cucumis melo])

HSP 1 Score: 160 bits (405), Expect = 3.75e-45
Identity = 91/117 (77.78%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           ESDGNGSSLQLYEKLSFSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGRGHMN
Sbjct: 258 ESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 317

Query: 81  G-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           G                   KKA EGNSNGFVS+LLKSLVRDTIIGVILWVLYEQLK
Sbjct: 318 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLK 374

[Close]

BLAST of MELO3C035596.jh1 vs. NCBI nr
Match: XP_011651134.1 (traB domain-containing protein isoform X2 [Cucumis sativus])

HSP 1 Score: 156 bits (394), Expect = 6.42e-45
Identity = 88/117 (75.21%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGRGHMN
Sbjct: 127 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 186

Query: 81  G-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           G                   KKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 187 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 243

[Close]

BLAST of MELO3C035596.jh1 vs. NCBI nr
Match: XP_004140793.1 (traB domain-containing protein isoform X1 [Cucumis sativus])

HSP 1 Score: 156 bits (394), Expect = 2.57e-43
Identity = 88/117 (75.21%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGRGHMN
Sbjct: 280 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 339

Query: 81  G-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           G                   KKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 340 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 396

[Close]

BLAST of MELO3C035596.jh1 vs. NCBI nr
Match: XP_038876488.1 (traB domain-containing protein isoform X2 [Benincasa hispida])

HSP 1 Score: 150 bits (378), Expect = 5.87e-41
Identity = 84/117 (71.79%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           ES GNGSSLQLYEKLSFSY SLLQPLIHERDT+LA SLK SKAVNKSK VV VIGRGHMN
Sbjct: 279 ESGGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKGVVGVIGRGHMN 338

Query: 81  G-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           G                   KKA E NSNGFVS+L++SLVRDTIIGV+LW+LYEQLK
Sbjct: 339 GVIYALISDQGNLRFRDLAGKKAGESNSNGFVSSLMRSLVRDTIIGVVLWILYEQLK 395

[Close]

BLAST of MELO3C035596.jh1 vs. NCBI nr
Match: XP_038876495.1 (traB domain-containing protein isoform X3 [Benincasa hispida])

HSP 1 Score: 144 bits (363), Expect = 6.41e-39
Identity = 84/121 (69.42%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDT----HLALSLKCSKAVNKSKRVVEVIGR 80
           ES GNGSSLQLYEKLSFSY SLLQPLIHERDT    +LA SLK SKAVNKSK VV VIGR
Sbjct: 254 ESGGNGSSLQLYEKLSFSYPSLLQPLIHERDTLHLQYLAWSLKRSKAVNKSKGVVGVIGR 313

Query: 81  GHMNG-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQL 118
           GHMNG                   KKA E NSNGFVS+L++SLVRDTIIGV+LW+LYEQL
Sbjct: 314 GHMNGVIYALISDQGNLRFRDLAGKKAGESNSNGFVSSLMRSLVRDTIIGVVLWILYEQL 373

[Close]

BLAST of MELO3C035596.jh1 vs. ExPASy TrEMBL
Match: A0A1S3AXQ2 (traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103484044 PE=4 SV=1)

HSP 1 Score: 160 bits (405), Expect = 1.82e-45
Identity = 91/117 (77.78%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           ESDGNGSSLQLYEKLSFSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGRGHMN
Sbjct: 258 ESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 317

Query: 81  G-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           G                   KKA EGNSNGFVS+LLKSLVRDTIIGVILWVLYEQLK
Sbjct: 318 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLK 374

[Close]

BLAST of MELO3C035596.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L5T2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180280 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 7.99e-45
Identity = 88/117 (75.21%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGRGHMN
Sbjct: 162 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 221

Query: 81  G-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           G                   KKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 222 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 278

[Close]

BLAST of MELO3C035596.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CGK3 (traB domain-containing protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011476 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 9.69e-38
Identity = 80/119 (67.23%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 19  LCESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGH 78
           L ES  NGSSLQLYE+L FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGRGH
Sbjct: 258 LQESGENGSSLQLYEQLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGH 317

Query: 79  MNG-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           MNG                   KKA +  SNGFVS L++SLVRDT+IGV+LWV+YEQLK
Sbjct: 318 MNGVVYAIISDQGNLRFRDLAGKKAGDQGSNGFVSGLVQSLVRDTVIGVVLWVVYEQLK 376

[Close]

BLAST of MELO3C035596.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CHI0 (traB domain-containing protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011476 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 1.31e-37
Identity = 79/117 (67.52%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           ES  NGSSLQLYE+L FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGRGHMN
Sbjct: 258 ESGENGSSLQLYEQLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 317

Query: 81  G-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           G                   KKA +  SNGFVS L++SLVRDT+IGV+LWV+YEQLK
Sbjct: 318 GVVYAIISDQGNLRFRDLAGKKAGDQGSNGFVSGLVQSLVRDTVIGVVLWVVYEQLK 374

[Close]

BLAST of MELO3C035596.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HYE5 (traB domain-containing protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467392 PE=4 SV=1)

HSP 1 Score: 135 bits (339), Expect = 5.90e-37
Identity = 79/117 (67.52%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           E+  +GSSLQLYE+LSFSY SLLQPLIHERDT++A SLK SKAVNKSKRVV VIGRGHMN
Sbjct: 127 EAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVIGRGHMN 186

Query: 81  G-------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           G                   K+A E  SNGFVS+LL+SLVRDTIIGV+ WVLYEQLK
Sbjct: 187 GVIYAIISDQGNLRFRDVAGKRAGE-TSNGFVSSLLQSLVRDTIIGVLFWVLYEQLK 242

[Close]

BLAST of MELO3C035596.jh1 vs. TAIR 10
Match: AT5G52030.2 (TraB family protein )

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24
Identity = 64/120 (53.33%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           E+D N  SLQLYE+LSFSY +LL PLIHERDT+LA SLK SKAVN  K VV VIG+GHMN
Sbjct: 274 ETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHMN 333

Query: 81  G------------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQ 117
           G                               SNG++  +LKS VRDTIIG +LW LYEQ
Sbjct: 334 GVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTIIGFLLWELYEQ 393

[Close]

BLAST of MELO3C035596.jh1 vs. TAIR 10
Match: AT5G52030.1 (TraB family protein )

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24
Identity = 64/120 (53.33%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 21  ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRGHMN 80
           E+D N  SLQLYE+LSFSY +LL PLIHERDT+LA SLK SKAVN  K VV VIG+GHMN
Sbjct: 130 ETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHMN 189

Query: 81  G------------------------KKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQ 117
           G                               SNG++  +LKS VRDTIIG +LW LYEQ
Sbjct: 190 GVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTIIGFLLWELYEQ 249

The following BLAST results are available for this feature:

BLAST of MELO3C035596.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439166.1	3.75e-45	77.78	PREDICTED: traB domain-containing protein [Cucumis melo]	[more]
XP_011651134.1	6.42e-45	75.21	traB domain-containing protein isoform X2 [Cucumis sativus]	[more]
XP_004140793.1	2.57e-43	75.21	traB domain-containing protein isoform X1 [Cucumis sativus]	[more]
XP_038876488.1	5.87e-41	71.79	traB domain-containing protein isoform X2 [Benincasa hispida]	[more]
XP_038876495.1	6.41e-39	69.42	traB domain-containing protein isoform X3 [Benincasa hispida]	[more]

BLAST of MELO3C035596.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C035596.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AXQ2	1.82e-45	77.78	traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103484044 PE=4 SV=1	[more]
A0A0A0L5T2	7.99e-45	75.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180280 PE=4 SV=1	[more]
A0A6J1CGK3	9.69e-38	67.23	traB domain-containing protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1CHI0	1.31e-37	67.52	traB domain-containing protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1HYE5	5.90e-37	67.52	traB domain-containing protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of MELO3C035596.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52030.2	1.5e-24	53.33	TraB family protein	[more]
AT5G52030.1	1.5e-24	53.33	TraB family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21530:SF0	TRAB DOMAIN-CONTAINING PROTEIN	coord: 25..117
None	No IPR available	PANTHER	PTHR21530	PHEROMONE SHUTDOWN PROTEIN	coord: 25..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035596.jh1.t1	MELO3C035596.jh1.t1	mRNA