MELO3C035409 (gene) Melon (DHL92) v4

Overview
NameMELO3C035409
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionZinc finger, CCHC-type
Locationchr12: 10582652 .. 10583074 (+)
RNA-Seq ExpressionMELO3C035409
SyntenyMELO3C035409
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAATATATTTATGCTATTACGTAATTATTGTGTAGGATGGAATGATAACATTAAAAAGCACTTCATCACAAGAAGGGAGTGAACCTCTTCTAGAAGGGGAAAGAACAAGGTTGGGGACCAAGACCTAAGAATGCTAGAAATGAAGCAATTCAACAAAGCACAAAAGAAACTGATAAGATGTTGAACAGTGAAGCTTACACCAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAGCATTCAAAGTCAAACCAATCAAGAGGCAATCATTATAACTCAAGGCTCAATGATAAAAGCTAGAGCTAAAAGATTTCAAGATGAATTAAATGCTTGTTTACAAGCTAGATTTTCAGTATTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGATCATAA

mRNA sequence

TAGAATATATTTATGCTATTACGTAATTATTGTGTAGGATGGAATGATAACATTAAAAAGCACTTCATCACAAGAAGGGAGTGAACCTCTTCTAGAAGGGGAAAGAACAAGGTTGGGGACCAAGACCTAAGAATGCTAGAAATGAAGCAATTCAACAAAGCACAAAAGAAACTGATAAGATGTTGAACAGTGAAGCTTACACCAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAGCATTCAAAGTCAAACCAATCAAGAGGCAATCATTATAACTCAAGGCTCAATGATAAAAGCTAGAGCTAAAAGATTTCAAGATGAATTAAATGCTTGTTTACAAGCTAGATTTTCAGTATTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGATCATAA

Coding sequence (CDS)

ATGTTGAACAGTGAAGCTTACACCAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAGCATTCAAAGTCAAACCAATCAAGAGGCAATCATTATAACTCAAGGCTCAATGATAAAAGCTAGAGCTAAAAGATTTCAAGATGAATTAAATGCTTGTTTACAAGCTAGATTTTCAGTATTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGATCATA

Protein sequence

MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII
Homology
BLAST of MELO3C035409 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 3.0e-29
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQA 60
           MLN+EAYTNSN+EENETHA NSW +IQ QTNQE II+TQGSM KARAKRF+DELNACLQA
Sbjct: 369 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 428

Query: 61  RFSVFNKELELQESLGHPRII 82
           RFSVFNKELELQESLGHPR+I
Sbjct: 429 RFSVFNKELELQESLGHPRLI 449

BLAST of MELO3C035409 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 3.0e-29
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQA 60
           MLN+EAYTNSN+EENETHA NSW +IQ QTNQE II+TQGSM KARAKRF+DELNACLQA
Sbjct: 405 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 464

Query: 61  RFSVFNKELELQESLGHPRII 82
           RFSVFNKELELQESLGHPR+I
Sbjct: 465 RFSVFNKELELQESLGHPRLI 485

BLAST of MELO3C035409 vs. NCBI nr
Match: TYK19543.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.4e-18
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL 59
           MLNSEA+TNSNEEENETHAGNSWE+IQSQTNQEAII+TQGSM KARAKR QD LNACL
Sbjct: 435 MLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACL 492

BLAST of MELO3C035409 vs. NCBI nr
Match: KAA0036753.1 (hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820.1 hypothetical protein E5676_scaffold110G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 4.8e-11
Identity = 47/78 (60.26%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 10  SNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL----------- 69
           ++EEENETHAGNSWE+IQSQTNQEAII+TQGSM KARAKR QD LN  +           
Sbjct: 786 NSEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLNELIVNLPTNFNDPT 845

Query: 70  QARFSVFNKELELQESLG 77
            A F  F  EL L+ S G
Sbjct: 846 SADFQKFMFELALELSGG 863

BLAST of MELO3C035409 vs. NCBI nr
Match: TYK14528.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 8.5e-08
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQD 53
           MLN+EA+TNSNE+ENE H GNSWE+ Q QTNQEA I+ Q SM KARAK  QD
Sbjct: 61  MLNNEAHTNSNEKENEAHVGNSWENFQRQTNQEA-IMAQCSMTKARAKILQD 111

BLAST of MELO3C035409 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQA 60
           MLN+EAYTNSN+EENETHA NSW +IQ QTNQE II+TQGSM KARAKRF+DELNACLQA
Sbjct: 369 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 428

Query: 61  RFSVFNKELELQESLGHPRII 82
           RFSVFNKELELQESLGHPR+I
Sbjct: 429 RFSVFNKELELQESLGHPRLI 449

BLAST of MELO3C035409 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQA 60
           MLN+EAYTNSN+EENETHA NSW +IQ QTNQE II+TQGSM KARAKRF+DELNACLQA
Sbjct: 405 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 464

Query: 61  RFSVFNKELELQESLGHPRII 82
           RFSVFNKELELQESLGHPR+I
Sbjct: 465 RFSVFNKELELQESLGHPRLI 485

BLAST of MELO3C035409 vs. ExPASy TrEMBL
Match: A0A5D3D7R5 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00380 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL 59
           MLNSEA+TNSNEEENETHAGNSWE+IQSQTNQEAII+TQGSM KARAKR QD LNACL
Sbjct: 435 MLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACL 492

BLAST of MELO3C035409 vs. ExPASy TrEMBL
Match: A0A5D3B744 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001050 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 47/78 (60.26%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 10  SNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL----------- 69
           ++EEENETHAGNSWE+IQSQTNQEAII+TQGSM KARAKR QD LN  +           
Sbjct: 786 NSEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLNELIVNLPTNFNDPT 845

Query: 70  QARFSVFNKELELQESLG 77
            A F  F  EL L+ S G
Sbjct: 846 SADFQKFMFELALELSGG 863

BLAST of MELO3C035409 vs. ExPASy TrEMBL
Match: A0A5D3CTJ1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQD 53
           MLN+EA+TNSNE+ENE H GNSWE+ Q QTNQEA I+ Q SM KARAK  QD
Sbjct: 61  MLNNEAHTNSNEKENEAHVGNSWENFQRQTNQEA-IMAQCSMTKARAKILQD 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK15114.13.0e-2986.42Zinc finger, CCHC-type [Cucumis melo var. makuwa][more]
KAA0065903.13.0e-2986.42reverse transcriptase [Cucumis melo var. makuwa][more]
TYK19543.12.4e-1889.66Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0036753.14.8e-1160.26hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820... [more]
TYK14528.18.5e-0871.15integrase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3CW051.4e-2986.42Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A5A7VCL91.4e-2986.42Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53... [more]
A0A5D3D7R51.2e-1889.66Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3B7442.3e-1160.26Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CTJ14.1e-0871.15Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035409.1MELO3C035409.1mRNA