MELO3C035344.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C035344.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGirdin-like
Locationchr12: 6460564 .. 6461810 (+)
RNA-Seq ExpressionMELO3C035344.jh1
SyntenyMELO3C035344.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAACAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAGTCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGATATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCATAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTAAAAAATTATGCCGATTTCTTACACTATCAACTTGCTACATTTCAAAATTCAAGTAAGAGGATAATGCAAGAATATGAGTCATTGAAGACGAATTACGTGCAAACGAAGGTTGATTATGATCTGCAAACAAGAGATTTCCAAGTGCTAATGGAACGTGTAGATCAGACGATTGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAAGGTTAATTTTTCCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGAACATTTTGGTCGTTTCCATTAATTGTTCATTTTGCTATTGA

mRNA sequence

ATCCAACAAATCCAAGGAAGGAGGCTTGCTTGTCTTTCTTTGCAAAATTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGGAGGCGGTGATATATAGATGCAGAGATTTTCACAATGTGCCTTTCTTGGGACTATGGGGAGGTGTTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTTATAATCTGCAAGAGTCTGATTTTTCATACGATTCTGAAGATTGTCAAGGAAAAAACGTCGAGCAGTATGCGCATGAAAATCTGTAAGGAAGATAAAAGACAAAGGATATTACGAAGGAGTTACTGGCGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGAAGGTAGTTGAAAGGGGAAAAGAGACGAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAAAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCATAAAGAGACAAGTCAATGGATGGATCATGCAACTTATTTGCAAAACAAACTCGAAAAGATTAAGAGTTTCTTAAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAATATTACAAGCAATAGTAGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTCGAGCTTGTAAATGATTTGAATACATCAATTGGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTAAAAAATTATGCCGATTTCTTACACTATCAACTTGCTACATTTCAAAATTCAAGTAAGAGGATAATGCAAGAATATGAGTCATTGAAGACGAATTACGTGCAAACGAAGGTTGATTATGATCTGCAAACAAGAGATTTCCAAGTGCTAATGGAACGTGTAGATCAGACGATTGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAAGGTTAATTTTTCCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGAACATTTTGGTCGTTTCCATTAATTGTTCATTTTGCTATTGA

Coding sequence (CDS)

ATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTAAAAAATTATGCCGATTTCTTACACTATCAACTTGCTACATTTCAAAATTCAAGTAAGAGGATAATGCAAGAATATGAGTCATTGAAGACGAATTACGTGCAAACGAAGGTTGATTATGATCTGCAAACAAGAGATTTCCAAGTGCTAATGGAACGTGTAGATCAGACGATTGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAAGGTTAATTTTTCCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGAACATTTTGGTCGTTTCCATTAA

Protein sequence

MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLKTNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHADDLNRFLKMICRELEHFGRFH
Homology
[Close]
BLAST of MELO3C035344.jh1 vs. NCBI nr
Match: TYK04062.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 244 bits (623), Expect = 7.91e-81
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA NHSLRQTVD+LHLKM ECSEEYEILKNYAD LHYQL   QNSS+RI QEYESL 
Sbjct: 1   MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 60

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
           T+YVQ KVDYDLQTRDFQVL+ERVDQTIEFLRMVSKRANGFAE AADL+VNF SMQPHAD
Sbjct: 61  TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAECAADLRVNFFSMQPHAD 120

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HF RFH
Sbjct: 121 DLNRFLKMICRELGHFRRFH 140

[Close]
BLAST of MELO3C035344.jh1 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 245 bits (625), Expect = 8.20e-80
Identity = 119/140 (85.00%), Postives = 126/140 (90.00%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA NHSLRQTVD+LHLKM ECSEEYEILKNYAD LHYQL   QNSS+RI QEYESL 
Sbjct: 92  MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 151

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
            +YVQ KVDYD++TRDFQVL+ERVDQTIEFLRMVSKRANGF EW ADL+VNF SMQPHAD
Sbjct: 152 IDYVQMKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFFSMQPHAD 211

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HFGRFH
Sbjct: 212 DLNRFLKMICRELGHFGRFH 231

[Close]
BLAST of MELO3C035344.jh1 vs. NCBI nr
Match: KAA0037619.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (616), Expect = 9.23e-80
Identity = 119/140 (85.00%), Postives = 126/140 (90.00%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA NHSLRQ VD+LHLKM ECSEEYEILKNYAD LHYQL   QNSS+RI QEYESL 
Sbjct: 1   MDLEAQNHSLRQIVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 60

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
           T+ VQ K+DYDL+TRDFQVL+ERVDQTIEFLRMVSKRANGFAEWAADL+VN  SMQPHAD
Sbjct: 61  TDNVQMKIDYDLRTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNCFSMQPHAD 120

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HFGRFH
Sbjct: 121 DLNRFLKMICRELGHFGRFH 140

[Close]
BLAST of MELO3C035344.jh1 vs. NCBI nr
Match: KAA0036956.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (615), Expect = 1.31e-79
Identity = 120/140 (85.71%), Postives = 125/140 (89.29%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA  HSLRQTVD+LHLKM E SEEYEILKNYADFLHYQL   QNSSKRI QEYESL 
Sbjct: 1   MDLEAQIHSLRQTVDSLHLKMAERSEEYEILKNYADFLHYQLTALQNSSKRITQEYESLN 60

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
           T+YVQ KVDYDL TRDFQVL+ERVDQTIEFLRMVSKRANGFAEW A+L+VNF SMQPHAD
Sbjct: 61  TDYVQMKVDYDLHTRDFQVLVERVDQTIEFLRMVSKRANGFAEWVANLRVNFFSMQPHAD 120

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HFG FH
Sbjct: 121 DLNRFLKMICRELGHFGHFH 140

[Close]
BLAST of MELO3C035344.jh1 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 246 bits (627), Expect = 1.62e-78
Identity = 120/140 (85.71%), Postives = 127/140 (90.71%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA NHSLRQTVD+LHLKM ECSEEYEILKNY + LHYQL   QNSS+RI QEYESL 
Sbjct: 209 MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYVESLHYQLTALQNSSRRITQEYESLN 268

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
           T+YVQ KVDYDLQTRDFQVL+ERVDQTIEFLRMVSKRANGFAEWAADL+VNF S+QPHAD
Sbjct: 269 TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHAD 328

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HFG FH
Sbjct: 329 DLNRFLKMICRELGHFGHFH 348

[Close]
BLAST of MELO3C035344.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BYW3 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 PE=4 SV=1)

HSP 1 Score: 244 bits (623), Expect = 3.83e-81
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA NHSLRQTVD+LHLKM ECSEEYEILKNYAD LHYQL   QNSS+RI QEYESL 
Sbjct: 1   MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 60

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
           T+YVQ KVDYDLQTRDFQVL+ERVDQTIEFLRMVSKRANGFAE AADL+VNF SMQPHAD
Sbjct: 61  TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAECAADLRVNFFSMQPHAD 120

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HF RFH
Sbjct: 121 DLNRFLKMICRELGHFRRFH 140

[Close]
BLAST of MELO3C035344.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 3.97e-80
Identity = 119/140 (85.00%), Postives = 126/140 (90.00%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA NHSLRQTVD+LHLKM ECSEEYEILKNYAD LHYQL   QNSS+RI QEYESL 
Sbjct: 92  MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 151

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
            +YVQ KVDYD++TRDFQVL+ERVDQTIEFLRMVSKRANGF EW ADL+VNF SMQPHAD
Sbjct: 152 IDYVQMKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFFSMQPHAD 211

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HFGRFH
Sbjct: 212 DLNRFLKMICRELGHFGRFH 231

[Close]
BLAST of MELO3C035344.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T8J1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 PE=4 SV=1)

HSP 1 Score: 241 bits (616), Expect = 4.47e-80
Identity = 119/140 (85.00%), Postives = 126/140 (90.00%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA NHSLRQ VD+LHLKM ECSEEYEILKNYAD LHYQL   QNSS+RI QEYESL 
Sbjct: 1   MDLEAQNHSLRQIVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 60

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
           T+ VQ K+DYDL+TRDFQVL+ERVDQTIEFLRMVSKRANGFAEWAADL+VN  SMQPHAD
Sbjct: 61  TDNVQMKIDYDLRTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNCFSMQPHAD 120

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HFGRFH
Sbjct: 121 DLNRFLKMICRELGHFGRFH 140

[Close]
BLAST of MELO3C035344.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T4A6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 6.35e-80
Identity = 120/140 (85.71%), Postives = 125/140 (89.29%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA  HSLRQTVD+LHLKM E SEEYEILKNYADFLHYQL   QNSSKRI QEYESL 
Sbjct: 1   MDLEAQIHSLRQTVDSLHLKMAERSEEYEILKNYADFLHYQLTALQNSSKRITQEYESLN 60

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
           T+YVQ KVDYDL TRDFQVL+ERVDQTIEFLRMVSKRANGFAEW A+L+VNF SMQPHAD
Sbjct: 61  TDYVQMKVDYDLHTRDFQVLVERVDQTIEFLRMVSKRANGFAEWVANLRVNFFSMQPHAD 120

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HFG FH
Sbjct: 121 DLNRFLKMICRELGHFGHFH 140

[Close]
BLAST of MELO3C035344.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 246 bits (627), Expect = 7.86e-79
Identity = 120/140 (85.71%), Postives = 127/140 (90.71%), Query Frame = 0 

Query: 1   MDLEAHNHSLRQTVDNLHLKMVECSEEYEILKNYADFLHYQLATFQNSSKRIMQEYESLK 60
           MDLEA NHSLRQTVD+LHLKM ECSEEYEILKNY + LHYQL   QNSS+RI QEYESL 
Sbjct: 209 MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYVESLHYQLTALQNSSRRITQEYESLN 268

Query: 61  TNYVQTKVDYDLQTRDFQVLMERVDQTIEFLRMVSKRANGFAEWAADLKVNFSSMQPHAD 120
           T+YVQ KVDYDLQTRDFQVL+ERVDQTIEFLRMVSKRANGFAEWAADL+VNF S+QPHAD
Sbjct: 269 TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHAD 328

Query: 121 DLNRFLKMICRELEHFGRFH 140
           DLNRFLKMICREL HFG FH
Sbjct: 329 DLNRFLKMICRELGHFGHFH 348

The following BLAST results are available for this feature:
BLAST of MELO3C035344.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK04062.17.91e-8187.14girdin-like [Cucumis melo var. makuwa][more]
KAA0060422.18.20e-8085.00girdin-like [Cucumis melo var. makuwa][more]
KAA0037619.19.23e-8085.00girdin-like [Cucumis melo var. makuwa][more]
KAA0036956.11.31e-7985.71girdin-like [Cucumis melo var. makuwa][more]
KAA0062685.11.62e-7885.71girdin-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C035344.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035344.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BYW33.83e-8187.14Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 P... [more]
A0A5A7UX373.97e-8085.00Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE... [more]
A0A5A7T8J14.47e-8085.00Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 P... [more]
A0A5A7T4A66.35e-8085.71Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=... [more]
A0A5A7V9X67.86e-7985.71Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P... [more]
BLAST of MELO3C035344.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035344.jh1.t1MELO3C035344.jh1.t1mRNA