Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon five_prime_UTR CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
T GGATCCATACATCTCGATCGGAAAAGAATCAATAGAAAAAGAAAGAATCGGAATGATCGATATATTTCTCGAAACAAACGAAAACGAAACGAAAGACGAAACATAAATCATGGATCAACTAAGCCAAGCCCTCTCGGGGACTTGCTTAAGAATAAGAAAGAGGAATCTCATGTAAATACCATGGAATAA mRNA sequence
TGGATCCATACATCTCGATCGGAAAAGAATCAATAGAAAAAGAAAGAATCGGAATGATCGATATATTTCTCGAAACAAACGAAAACGAAACGAAAGACGAAACATAAATCATGGATCAACTAAGCCAAGCCCTCTCGGGGACTTGCTTAAGAATAAGAAAGAGGAATCTCATGTAAATACCATGGAATAA Coding sequence (CDS)
GGATCCATACATCTCGATCGGAAAAGAATCAATAGAAAAAGAAAGAATCGGAATGATCGATATATTTCTCGAAACAAACGAAAACGAAACGAAAGACGAAACATAAATCATGGATCAACTAAGCCAAGCCCTCTCGGGGACTTGCTTAAGAATAAGAAAGAGGAATCTCATGTAAATACCATGGAATAA Protein sequence
GSIHLDRKRINRKRKNRNDRYISRNKRKRNERRNINHGSTKPSPLGDLLKNKKEESHVNTME
Homology
BLAST of MELO3C035266 vs. ExPASy TrEMBL
Match:
A0A4Y1KCR6 (30S ribosomal protein S7, chloroplastic OS=Thalassia hemprichii OX=55496 GN=rps7 PE=3 SV=1)
HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0
Query: 1 GSIHLDRKRINRKRKNRNDRYISRNKRKRNE-RRNINHGSTKPSPLGDLLKNKKEESHVN 60 GSI+LD+KRI+RKR N + SRNK+K E RRN NHGSTKPS G LL KKEES N Sbjct: 166 GSINLDKKRIHRKRIRMNRYFFSRNKQKGKERRRNRNHGSTKPSRGGGLL--KKEESDGN 225 Query: 61 TME 63 M+ Sbjct: 226 IMK 226
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A4Y1KCR6 6.1e-04 61.90 30S ribosomal protein S7, chloroplastic OS=Thalassia hemprichii OX=55496 GN=rps7... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
T G G A T C C A T A C A T C T C G A T C G G A A A A G A A T C A A T A G A A A A A G A A A G A A T C G G A A T G A T C G A T A T A T T T C T C G A A A C A A A C G A A A A C G A A A C G A A A G A C G A A A C A T A A A T C A T G G A T C A A C T A A G C C A A G C C C T C T C G G G G A C T T G C T T A A G A A T A A G A A A G A G G A A T C T C A T G T A A A T A C C A T G G A A T A A 20 40 60 80 100 120 140 160 180 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 7..34
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 47..62
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..62
Relationships
The following mRNA feature(s) are a part of this gene: