MELO3C035194 (gene) Melon (DHL92) v4

Overview
NameMELO3C035194
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGlycine-rich protein family
Locationchr11: 28359737 .. 28360748 (-)
RNA-Seq ExpressionMELO3C035194
SyntenyMELO3C035194
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCTTTTTCTTGCATTATGCTAGAGTTCCACTTTCAGCTATTCTCCTCTTCTACCTTCTCACTTATGGTTGTTTTTATGGTAATGTGTAGCCATGTATTCTTTCTATCTCATTTTATAATAATTTTCTTTGGTTTTAAACTTATTTATTTAATTTAATATCGATCTAAACATAAATAACTCAACTGATATTGTTGTATGCATAAAACAATATTTTTGAATTAGGATGGTCAAAATTTCAAATCTCGTACACACTTTTGCTATATAAAACTAGGCTTCTTGTGCTCTGTTTGGTTCTTTGTTTTTTAAAACTAAACTTATTTCCTATCGGCTTCTTATAAGGATTTTCATCTTTTTTAAATTAAAAGTTGAATTCTCGACCAAATTCTAAAATTTTCAAATTTATGTTTCAACTACTTTTTTCTCTGTTTAAAAAATTGAGTTGGTTTTTGAAAACATTGATAAATGGTACATAGCAAGAAACAGAAATACAAAGGTGAAATATATGTTTAGATTATTAATTTTAAAAAATAGAAAGAAAAAGAAATTTTGAAAGAACTTAATTTATTATTTTTGAAAATTAAACTTATAAACTCTACTTTTACTAATAATTTCTATGTTACATTGTTGGTTTAAAAATTCAAGCCAAGTTCTTTTTTTATCTTTTGATAGTATACACAAGGTGGAAAGTCGAATCTCTGAGTTCATTAAATTATGTTTATGTTGACAAAACTAAACCAGAGTTATAAAAAATGTTTTTAGATTTTGAGGTATAACTTAAATGTTCTTTTATTAAACAAATTGAAAATCGAGAGAGAGAAAAATCAGTTTTATAAACTCAAATTTATTAGTATAATGAGCATAAATTTAAAATAAAGTCTTTTTTTTTTTCTTTCAGGAAAATGTGATGATTTCGAGAGCGGTTCAACGGGTGGTTCGGTGGGTTTTGAGGACCCGCCTGAGATTGTTGCCAAAGCATTGCTTTGCTTTAATGACAGATATGTATGT

mRNA sequence

ATGGCTCTCTTTTTCTTGCATTATGCTAGAGTTCCACTTTCAGCTATTCTCCTCTTCTACCTTCTCACTTATGGAAAATGTGATGATTTCGAGAGCGGTTCAACGGGTGGTTCGGTGGGTTTTGAGGACCCGCCTGAGATTGTTGCCAAAGCATTGCTTTGCTTTAATGACAGATATGTATGT

Coding sequence (CDS)

ATGGCTCTCTTTTTCTTGCATTATGCTAGAGTTCCACTTTCAGCTATTCTCCTCTTCTACCTTCTCACTTATGGAAAATGTGATGATTTCGAGAGCGGTTCAACGGGTGGTTCGGTGGGTTTTGAGGACCCGCCTGAGATTGTTGCCAAAGCATTGCTTTGCTTTAATGACAGATATGTATGT

Protein sequence

MALFFLHYARVPLSAILLFYLLTYGKCDDFESGSTGGSVGFEDPPEIVAKALLCFNDRYVC
Homology
BLAST of MELO3C035194 vs. NCBI nr
Match: XP_004150092.2 (uncharacterized protein LOC101212342 [Cucumis sativus] >KAE8647084.1 hypothetical protein Csa_023016 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 1  MALFFLHYARVPLSAILLFYLLTYGKCDDFESGSTGGSVGFEDPPEIVAKALLCFNDRYV 60
          MALFFLH+ARVPLSAILLFYLLTYGKCDDFESGSTG SVGFEDPPEIVAKALLCFNDRY+
Sbjct: 26 MALFFLHFARVPLSAILLFYLLTYGKCDDFESGSTGSSVGFEDPPEIVAKALLCFNDRYI 85

BLAST of MELO3C035194 vs. NCBI nr
Match: XP_008458378.1 (PREDICTED: uncharacterized protein LOC103497804 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 4.9e-24
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1  MALFFLHYARVPLSAILLFYLLT----YGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 60
          MALFFLHYARVPLSAILLFYLLT    YGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN
Sbjct: 20 MALFFLHYARVPLSAILLFYLLTYGCFYGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 79

BLAST of MELO3C035194 vs. NCBI nr
Match: XP_038906636.1 (uncharacterized protein LOC120092583 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 9.5e-20
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 0

Query: 1  MALFFLHYARVPLSAILLFYLLT----YGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 60
          MA+ FLH+AR+P+SAIL+ YLLT    YGKCDDFESGSTG SVGF DPPEIVAKALLCFN
Sbjct: 1  MAIVFLHFARIPISAILILYLLTCGCFYGKCDDFESGSTGSSVGFVDPPEIVAKALLCFN 60

BLAST of MELO3C035194 vs. NCBI nr
Match: XP_023514279.1 (uncharacterized protein LOC111778597 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-11
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 1  MALFFLHYARVPLSAILLFYLLT----YGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 60
          M L F  + R+ +SA+ LFYLLT    YGK DD E  ++ G VG+EDPPEIVAKALLCFN
Sbjct: 1  MPLVFFPFPRISISAVALFYLLTSSYLYGKGDDAEGVASSGFVGYEDPPEIVAKALLCFN 60

BLAST of MELO3C035194 vs. NCBI nr
Match: XP_023000051.1 (uncharacterized protein LOC111494359 [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 6.2e-11
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 1  MALFFLHYARVPLSAILLFYLLT----YGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 60
          MAL F  + R+ +SA+ +FYLLT    YGK DD E  ++ G VG+EDPPEIVAKAL CFN
Sbjct: 18 MALVFFPFTRISISAVAVFYLLTSCYLYGKGDDAEGVASSGFVGYEDPPEIVAKALRCFN 77

BLAST of MELO3C035194 vs. ExPASy TrEMBL
Match: A0A0A0KCE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311000 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.2e-25
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 1  MALFFLHYARVPLSAILLFYLLTYGKCDDFESGSTGGSVGFEDPPEIVAKALLCFNDRYV 60
          MALFFLH+ARVPLSAILLFYLLTYGKCDDFESGSTG SVGFEDPPEIVAKALLCFNDRY+
Sbjct: 1  MALFFLHFARVPLSAILLFYLLTYGKCDDFESGSTGSSVGFEDPPEIVAKALLCFNDRYI 60

BLAST of MELO3C035194 vs. ExPASy TrEMBL
Match: A0A1S3C8B8 (uncharacterized protein LOC103497804 OS=Cucumis melo OX=3656 GN=LOC103497804 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1  MALFFLHYARVPLSAILLFYLLT----YGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 60
          MALFFLHYARVPLSAILLFYLLT    YGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN
Sbjct: 20 MALFFLHYARVPLSAILLFYLLTYGCFYGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 79

BLAST of MELO3C035194 vs. ExPASy TrEMBL
Match: A0A6J1KET4 (uncharacterized protein LOC111494359 OS=Cucurbita maxima OX=3661 GN=LOC111494359 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.0e-11
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 1  MALFFLHYARVPLSAILLFYLLT----YGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 60
          MAL F  + R+ +SA+ +FYLLT    YGK DD E  ++ G VG+EDPPEIVAKAL CFN
Sbjct: 18 MALVFFPFTRISISAVAVFYLLTSCYLYGKGDDAEGVASSGFVGYEDPPEIVAKALRCFN 77

BLAST of MELO3C035194 vs. ExPASy TrEMBL
Match: A0A6J1EX17 (uncharacterized protein LOC111436937 OS=Cucurbita moschata OX=3662 GN=LOC111436937 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.4e-10
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 1  MALFFLHYARVPLSAILLFYLLT----YGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 60
          MAL F  + R+ +SA+ +FYLLT     GK DD E  ++ G VG+EDPPEIVAKAL CFN
Sbjct: 18 MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFN 77

BLAST of MELO3C035194 vs. ExPASy TrEMBL
Match: A0A6J1CAS9 (uncharacterized protein LOC111009540 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009540 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0

Query: 22  LTYGKCDDFE-SGSTGGSVGFEDPPEIVAKALLCFNDRYV 61
           L  GK DD E  G+T GS+G+EDPPEIVAKALLCFND+Y+
Sbjct: 468 LLIGKGDDVEGDGATSGSIGYEDPPEIVAKALLCFNDKYI 507

BLAST of MELO3C035194 vs. TAIR 10
Match: AT5G49350.1 (Glycine-rich protein family )

HSP 1 Score: 43.1 bits (100), Expect = 9.2e-05
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 0

Query: 33  GSTGGSVGFEDPPEIVAKALLCFNDRYV 61
           G  GG +G EDPPEIVAKAL C N++++
Sbjct: 166 GLGGGGLGGEDPPEIVAKALECLNEKHI 193

BLAST of MELO3C035194 vs. TAIR 10
Match: AT5G49350.2 (Glycine-rich protein family )

HSP 1 Score: 43.1 bits (100), Expect = 9.2e-05
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 0

Query: 33  GSTGGSVGFEDPPEIVAKALLCFNDRYV 61
           G  GG +G EDPPEIVAKAL C N++++
Sbjct: 89  GLGGGGLGGEDPPEIVAKALECLNEKHI 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_004150092.21.3e-2495.00uncharacterized protein LOC101212342 [Cucumis sativus] >KAE8647084.1 hypothetica... [more]
XP_008458378.14.9e-2492.19PREDICTED: uncharacterized protein LOC103497804 [Cucumis melo][more]
XP_038906636.19.5e-2078.13uncharacterized protein LOC120092583 [Benincasa hispida][more]
XP_023514279.12.8e-1159.38uncharacterized protein LOC111778597 [Cucurbita pepo subsp. pepo][more]
XP_023000051.16.2e-1157.81uncharacterized protein LOC111494359 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A0A0KCE56.2e-2595.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311000 PE=4 SV=1[more]
A0A1S3C8B82.4e-2492.19uncharacterized protein LOC103497804 OS=Cucumis melo OX=3656 GN=LOC103497804 PE=... [more]
A0A6J1KET43.0e-1157.81uncharacterized protein LOC111494359 OS=Cucurbita maxima OX=3661 GN=LOC111494359... [more]
A0A6J1EX177.4e-1056.25uncharacterized protein LOC111436937 OS=Cucurbita moschata OX=3662 GN=LOC1114369... [more]
A0A6J1CAS93.4e-0770.00uncharacterized protein LOC111009540 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
AT5G49350.19.2e-0560.71Glycine-rich protein family [more]
AT5G49350.29.2e-0560.71Glycine-rich protein family [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035194.1MELO3C035194.1mRNA