MELO3C035187.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C035187.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	LOW QUALITY PROTEIN: ras-related protein Rab-2A-like
Location	chr11: 30348276 .. 30351540 (-)
RNA-Seq Expression	MELO3C035187.jh1
Synteny	MELO3C035187.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAATCAAAATATGTATTATTGCAGGCTGGACAAGAGGCATTCAAATCAATTACAAGATCTTATTACAGAGGAGCAATCGGTGCACTTTTGGTTTATGATGTTACTAGGTAAGTTCTAATATAAAAGTAAATTGAAATATTATAACTAAATTTGATCATAGATCATCAAACCTTAGAATAGTTAGGAATAAAAACATCAAAAGTACTGATTTGAATGAAATTTAAATGTCAACCTCAATAATTATTATTGCATTAAGGAGAGAGACATTCTCTAACTTGAAGAGTTGGTTGGATGATGTTAGAGAGCTTGCACATCCCGACATATCAATTATGGTGGTAGGAAATAAGATTGATAAAAATGGTCGAAGAGAAGTGACCAAAGAAGAAGGACAACATTTTGCGGAACAAAATGGACTCTTGTTTTTAGAGACATCCGCTAAAACAAGTCAAAATGTCTATGAGGTTAGTTTAATTTGTTTCAAAAATTCATGACATATATATAAAATATAATGACATATCTTTAAAGAAAAAATCATTAGTATTTAAACTCTTACGAAACAGTCGTGTATTTCTTAAGTTTAGTAAATTTATAAACATTCATTTGTCTCTATTAACCATCAAATTTTAAAATTTATACTTTTAATTTTATTTGATATTCGATTCTTATTCGAGGGTTTTAATTTCTACCATTATTTTGAAATAATTTAAATAATTATAAATAGATTAATTACTTATCATATTAATTTATTTTTCTTATTTATTTATTATTTCGTTTAGCTGATCACCAATAGTGTTGTTCTACAGGCTTTCTCAATAATTGCAAATAACATACTTGACAACATTGAGCTTGGTGTCCTTGATTTATCCAATAAGGTAATTTTTATTTTCATCTTTAATTATTTTCATCTTTAATTAAACATAGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTGTATCTAAATTTTGATTATTTGAGTTCTTGTATAATTTAGTTCTTTTAAGTTAAACAATTTTATTAGAACTAGAAGTTAATTTTTATTATTTTATGATGTAGATTTGTATTTTATATAAAAATATTGAAACTTTAGTTAGTTTATTGGTTTATTTATGTAAGAAATCTCATTAAATATTAGCTTTAGATTTTACAATAGAGATTAAATTGTTACAAATTTTAACCTGTGGCGACTAAATTGTTAATTAAACCAGAGTTTAAAGACTTAATTGTTACTTTCATAAAAATTTAGGGATCAGGATGAAAGTAATTTTTAATCTTAAATTTTTTCTCAAACCTAGAATGAACCTGCCACTTATTGAATAACCACTTATTGAATAAGGCATAACTATGAATCGAATATGACTAGCTTTTTCACTTTTAAAATCACCACGACATCTCTCAAAGTCTTATTCATTATAATAATTCTTTTCAATATAGTAAATGAAAGATTATTTGAATTACAGATCTCTTAAAGATTAATATGTTCTTACGGTAGTTTGAGTTACACTCGTTCTTTTTTAACGATGGAAGAAATGTATCAAAATGATATTTAAACGATCTTGATATTCTTGAATATAAGAAAAATGAAATAGCTTAAAAAAATCTTGCCAAAAATGATAAAAATAAATAGGAACCTTATGGAGAAAAATAAATTATTGGAGGAGACAGATAAATGTGGAAGAGAAGATGAATAAGTTTAAGAAGAAAGACAAGCGATAAATCGTCAACCGTCAAAGACAGATCTGTAAATTATGAAAATACTTTACCGGCTTTCTAAAACTTTTGTTTTTTAATACGACTGGTAAATATTTTTTAATTAACCTAATAGAATTCATTATATATTTTTATTATTAATTTATATATTTTTCTTATTAATTTAATAAATACTAAATAGAAAATAATTAGGTCAGAATTTCAATTTCATGCCCTCACTTCTAGAGTTCAAGTTCACGCCGCCACTATACTGACCCTCCCGTCTCGGCCGCTCATCTCACGCCGTCACCGGCGCAATCGTCTCCGGCCATCTCTCCTTCTGAGAAGTCTCCGATAGTCGCTCGGGAGATTTGGCCTCTCATCTCACGCCGTCTCCGGCGTTCAATCGTCTCTCCTTCTCAGTCTCCATCCGTCTCTCCTTATCAGAAGTCTCTCAATCTCCGGTCGTCTCTCCTTCTCAGAAGTGTCCGATAGTCGCTCGCGCTCGGCTCTCCCTCACCGTTGCGTTGCCGCCGGCTACGATACTTTGTTGCGTACGACTTATCCAAATAAATTTCTCAAGGTAAATAACATTGTTTCTGCATTGCTTGAGTAAGTACATATTTTTGATCCACTTGGAACTTTTGGATGATATTTATAACCATACTTGAACAAGATCTATTTTATAGATTTTACAACTTTGCTTTGCTTTGTTAGTTTTATCATTTTTTTTTTTCAAATCCTTCCGTCATATTGGGATTATTTGTTTGTCTTCCAAACATACATATAAACACTCTTATTTTAACTTGAAATAATGCAACCTGACAACCAACCCCAAGAAATAATGTTTGAGGTAGGATCACTATATTCAAAATTTGTATTTAGTAAGCATATTAGATTTGAGATCAGAAACAATGATAGTTTTTAAGTTATTTTCATAGTCAAAGTGTCACACCAAGTTCTAATTTTTAGTTGGTTACGAGTTTAAAAGTCACATTTTGACACTTCTTGGATACTTTAGGTTGGTTTGGTAGTCACACTTAATCATAAGTTGTTTTGAGAGTTAAGACACATTTTAGTTATTTTTCAGTCGGTTTTTAGTTTGAAAGTCACACCCAAGACACTTTTTAACTTGTTTTGAAAGTTAAGATACTTTATAGAGATTTTGTGTTTGGTTTTGAGTTTGGAAGGTGCATCATATAACCATTTTGAAAATTGGTTTGAGGGTCAAGAGAATTTGCAGGTGATTTAGTTGATTTTTAGTTTGAAAGTCACATTGAAAGAGTTTTGACTTGTAATGTGGGATTTAAAGTGCTACATAGACACTTTTTGACTTGTTTTTAGAGTTATACTCATATTTTCACACTTTTAAGAAACTTTTTAGGTTGACATTGATATTACGTGTCAATATCCTTCAGCTATTATAGCCAATCATGCATATATTTCACATTTATTGTATGCTTGAGATGTAATATGTTGTGGCTATCCTGTAGTCACCTCTCACATATTAATTGAAAAACCTTAGATAAGAAGAAGAAGAAGAAGACGATAG

mRNA sequence

ATGGTAAAATCAAAATATGTATTATTGCAGGCTGGACAAGAGGCATTCAAATCAATTACAAGATCTTATTACAGAGGAGCAATCGGTGCACTTTTGGTTTATGATGTTACTAGGAGAGAGACATTCTCTAACTTGAAGAGTTGGTTGGATGATGTTAGAGAGCTTGCACATCCCGACATATCAATTATGGTGGTAGGAAATAAGATTGATAAAAATGGTCGAAGAGAAGTGACCAAAGAAGAAGGACAACATTTTGCGGAACAAAATGGACTCTTGTTTTTAGAGACATCCGCTAAAACAAGTCAAAATGTCTATGAGCTGATCACCAATAGTGTTGTTCTACAGGCTTTCTCAATAATTGCAAATAACATACTTGACAACATTGAGCTTGGTGTCCTTGATTTATCCAATAAGAGTTCAAGTTCACGCCGCCACTATACTGACCCTCCCGTCTCGGCCGCTCATCTCACGCCGTCACCGGCGCAATCGTCTCCGGCCATCTCTCCTTCTGAGAAGTCTCCGATAGTCGCTCGGGAGATTTGGCCTCTCATCTCACGCCAAGTGTCCGATAGTCGCTCGCGCTCGGCTCTCCCTCACCGTTGCGTTGCCGCCGGCTACGATACTTTGTTGCGTACGACTTATCCAAATAAATTTCTCAAGATAAGAAGAAGAAGAAGAAGACGATAG

Coding sequence (CDS)

ATGGTAAAATCAAAATATGTATTATTGCAGGCTGGACAAGAGGCATTCAAATCAATTACAAGATCTTATTACAGAGGAGCAATCGGTGCACTTTTGGTTTATGATGTTACTAGGAGAGAGACATTCTCTAACTTGAAGAGTTGGTTGGATGATGTTAGAGAGCTTGCACATCCCGACATATCAATTATGGTGGTAGGAAATAAGATTGATAAAAATGGTCGAAGAGAAGTGACCAAAGAAGAAGGACAACATTTTGCGGAACAAAATGGACTCTTGTTTTTAGAGACATCCGCTAAAACAAGTCAAAATGTCTATGAGCTGATCACCAATAGTGTTGTTCTACAGGCTTTCTCAATAATTGCAAATAACATACTTGACAACATTGAGCTTGGTGTCCTTGATTTATCCAATAAGAGTTCAAGTTCACGCCGCCACTATACTGACCCTCCCGTCTCGGCCGCTCATCTCACGCCGTCACCGGCGCAATCGTCTCCGGCCATCTCTCCTTCTGAGAAGTCTCCGATAGTCGCTCGGGAGATTTGGCCTCTCATCTCACGCCAAGTGTCCGATAGTCGCTCGCGCTCGGCTCTCCCTCACCGTTGCGTTGCCGCCGGCTACGATACTTTGTTGCGTACGACTTATCCAAATAAATTTCTCAAGATAAGAAGAAGAAGAAGAAGACGATAG

Protein sequence

MVKSKYVLLQAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIELGVLDLSNKSSSSRRHYTDPPVSAAHLTPSPAQSSPAISPSEKSPIVAREIWPLISRQVSDSRSRSALPHRCVAAGYDTLLRTTYPNKFLKIRRRRRRR

Homology

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BLAST of MELO3C035187.jh1 vs. NCBI nr
Match: XP_008458689.1 (PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-2A-like, partial [Cucumis melo])

HSP 1 Score: 211 bits (538), Expect = 2.75e-65
Identity = 114/132 (86.36%), Postives = 117/132 (88.64%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQEAFKSITRSYYRGAIGALLVYDVTRR+TFSNLKSWLDDVRELAHPDISIMVV NK+D
Sbjct: 66  AGQEAFKSITRSYYRGAIGALLVYDVTRRKTFSNLKSWLDDVRELAHPDISIMVVXNKVD 125

Query: 71  KNGRREVTKE--EGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNI 130
           KNGRREVTKE  EGQHFAEQNGL FLETSAKTSQNVYE          FSIIANNILD I
Sbjct: 126 KNGRREVTKEKEEGQHFAEQNGLWFLETSAKTSQNVYE---------PFSIIANNILDKI 185

Query: 131 ELGVLDLSNKSS 140
           ELGVLDLSNK+S
Sbjct: 186 ELGVLDLSNKAS 188

[Close]

BLAST of MELO3C035187.jh1 vs. NCBI nr
Match: RVW78616.1 (Ras-related protein RABB1b [Vitis vinifera])

HSP 1 Score: 158 bits (400), Expect = 2.53e-45
Identity = 83/144 (57.64%), Postives = 108/144 (75.00%), Query Frame = 0


Query: 6   YVLLQAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVV 65
           +++ QAGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++
Sbjct: 2   HMIFQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLI 61

Query: 66  GNKIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNIL 125
           GNK D   RR V+KEEG+ FA++NGLLFLE SA+T+QNV E         AF   A  IL
Sbjct: 62  GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE---------AFIKTAARIL 121

Query: 126 DNIELGVLDLSNKSSSSRRHYTDP 149
            NI+ GV DLSN+SS  +  Y  P
Sbjct: 122 QNIQEGVFDLSNESSGIKVGYGRP 136

[Close]

BLAST of MELO3C035187.jh1 vs. NCBI nr
Match: MBA0870721.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 157 bits (397), Expect = 9.51e-45
Identity = 81/140 (57.86%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 7   VLLQAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVG 66
           ++ QAGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++G
Sbjct: 10  IIFQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIG 69

Query: 67  NKIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILD 126
           NK D + RR V+KEEG+ FA++NGLLFLE SA+T+QNV E         AF   A  IL 
Sbjct: 70  NKSDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE---------AFIKTAAKILQ 129

Query: 127 NIELGVLDLSNKSSSSRRHY 146
           NI+ GV D+SN+SS  +  Y
Sbjct: 130 NIQEGVFDVSNESSGIKIGY 140

[Close]

BLAST of MELO3C035187.jh1 vs. NCBI nr
Match: MBA0857063.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 155 bits (393), Expect = 3.70e-44
Identity = 81/139 (58.27%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 8   LLQAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGN 67
           + QAGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++GN
Sbjct: 10  IFQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGN 69

Query: 68  KIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDN 127
           K D + RR V+KEEG+ FA++NGLLFLE SA+T+QNV E         AF   A  IL N
Sbjct: 70  KCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE---------AFVKTAAKILQN 129

Query: 128 IELGVLDLSNKSSSSRRHY 146
           I+ GV D SN+SS  +  Y
Sbjct: 130 IQEGVFDASNESSGIKIGY 139

[Close]

BLAST of MELO3C035187.jh1 vs. NCBI nr
Match: MBA0712459.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 155 bits (391), Expect = 5.29e-44
Identity = 81/137 (59.12%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 10  QAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKI 69
           QAGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++GNK 
Sbjct: 1   QAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKC 60

Query: 70  DKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIE 129
           D + RR V+KEEG+ FA++NGLLFLE SA+T+QNV E         AF   A  IL NI+
Sbjct: 61  DLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE---------AFVKTAAKILQNIQ 120

Query: 130 LGVLDLSNKSSSSRRHY 146
            GV D SN+SS  +  Y
Sbjct: 121 EGVFDASNESSGIKIGY 128

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BLAST of MELO3C035187.jh1 vs. ExPASy Swiss-Prot
Match: Q38922 (Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.7e-36
Identity = 80/136 (58.82%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 71  KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIEL 130
              +R V+KEEGQ FA+++GLLFLE SA+T+QNV E         AF   A  IL NI+ 
Sbjct: 123 LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEE---------AFIETAAKILQNIQD 182

Query: 131 GVLDLSNKSSSSRRHY 147
           GV D+SN+SS  +  Y
Sbjct: 183 GVFDVSNESSGIKIGY 189

[Close]

BLAST of MELO3C035187.jh1 vs. ExPASy Swiss-Prot
Match: P36863 (GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-33
Identity = 76/142 (53.52%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 2   VKSKYVLLQ----AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAH 61
           +  K + LQ    AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+
Sbjct: 50  IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 109

Query: 62  PDISIMVVGNKIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAF 121
           P+++IM++GNK D   RR VT EEG+ FA+++GL+FLETSA+T+ NV E   N+      
Sbjct: 110 PNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINT------ 169

Query: 122 SIIANNILDNIELGVLDLSNKS 140
              A  I   I+ GV D+SN+S
Sbjct: 170 ---AKEIYKKIQDGVFDVSNES 182

[Close]

BLAST of MELO3C035187.jh1 vs. ExPASy Swiss-Prot
Match: Q39570 (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.0e-32
Identity = 83/173 (47.98%), Postives = 112/173 (64.74%), Query Frame = 0


Query: 2   VKSKYVLLQ----AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAH 61
           +  K + LQ    AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+
Sbjct: 50  IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 109

Query: 62  PDISIMVVGNKIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAF 121
           P+++IM++GNK D   RR VT EEG+ FA+++GL+FLETSA+T+ NV E   N+      
Sbjct: 110 PNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINT------ 169

Query: 122 SIIANNILDNIELGVLDLSNKSSSSRRHYTDPPVSAAHLTPSPAQSSPAISPS 171
              A  I   I+ GV D+SN+S   +  Y     +A   T  P +   A S S
Sbjct: 170 ---AKEIYKKIQDGVFDVSNESYGIKVGYGGG--NAGPQTVKPGEGGAAKSSS 211

[Close]

BLAST of MELO3C035187.jh1 vs. ExPASy Swiss-Prot
Match: P49103 (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 1.7e-32
Identity = 75/139 (53.96%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+ +++IM+VGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCD 122

Query: 71  KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIEL 130
            + RR V+ EEG+ FA+++GL+F+E SAKT+QNV E         AF   A  I   I+ 
Sbjct: 123 LSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEE---------AFVKTAGAIYKKIQD 182

Query: 131 GVLDLSNKSSSSRRHYTDP 150
           GV D+SN+S   +  Y  P
Sbjct: 183 GVFDVSNESYGIKVGYVVP 192

[Close]

BLAST of MELO3C035187.jh1 vs. ExPASy Swiss-Prot
Match: P49104 (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.7e-32
Identity = 75/139 (53.96%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+ +++IM+VGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCD 122

Query: 71  KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIEL 130
            + RR V+ EEG+ FA+++GL+F+E SAKT+QNV E         AF   A  I   I+ 
Sbjct: 123 LSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEE---------AFVKTAGAIYKKIQD 182

Query: 131 GVLDLSNKSSSSRRHYTDP 150
           GV D+SN+S   +  Y  P
Sbjct: 183 GVFDVSNESYGIKVGYAIP 192

[Close]

BLAST of MELO3C035187.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C8F9 (LOW QUALITY PROTEIN: ras-related protein Rab-2A-like OS=Cucumis melo OX=3656 GN=LOC103498018 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 1.33e-65
Identity = 114/132 (86.36%), Postives = 117/132 (88.64%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQEAFKSITRSYYRGAIGALLVYDVTRR+TFSNLKSWLDDVRELAHPDISIMVV NK+D
Sbjct: 66  AGQEAFKSITRSYYRGAIGALLVYDVTRRKTFSNLKSWLDDVRELAHPDISIMVVXNKVD 125

Query: 71  KNGRREVTKE--EGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNI 130
           KNGRREVTKE  EGQHFAEQNGL FLETSAKTSQNVYE          FSIIANNILD I
Sbjct: 126 KNGRREVTKEKEEGQHFAEQNGLWFLETSAKTSQNVYE---------PFSIIANNILDKI 185

Query: 131 ELGVLDLSNKSS 140
           ELGVLDLSNK+S
Sbjct: 186 ELGVLDLSNKAS 188

[Close]

BLAST of MELO3C035187.jh1 vs. ExPASy TrEMBL
Match: A0A438H1V5 (Ras-related protein RABB1b OS=Vitis vinifera OX=29760 GN=RABB1B_1 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 1.23e-45
Identity = 83/144 (57.64%), Postives = 108/144 (75.00%), Query Frame = 0


Query: 6   YVLLQAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVV 65
           +++ QAGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++
Sbjct: 2   HMIFQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLI 61

Query: 66  GNKIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNIL 125
           GNK D   RR V+KEEG+ FA++NGLLFLE SA+T+QNV E         AF   A  IL
Sbjct: 62  GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE---------AFIKTAARIL 121

Query: 126 DNIELGVLDLSNKSSSSRRHYTDP 149
            NI+ GV DLSN+SS  +  Y  P
Sbjct: 122 QNIQEGVFDLSNESSGIKVGYGRP 136

[Close]

BLAST of MELO3C035187.jh1 vs. ExPASy TrEMBL
Match: A0A7J9MID0 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_016390 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 4.60e-45
Identity = 81/140 (57.86%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 7   VLLQAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVG 66
           ++ QAGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++G
Sbjct: 10  IIFQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIG 69

Query: 67  NKIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILD 126
           NK D + RR V+KEEG+ FA++NGLLFLE SA+T+QNV E         AF   A  IL 
Sbjct: 70  NKSDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE---------AFIKTAAKILQ 129

Query: 127 NIELGVLDLSNKSSSSRRHY 146
           NI+ GV D+SN+SS  +  Y
Sbjct: 130 NIQEGVFDVSNESSGIKIGY 140

[Close]

BLAST of MELO3C035187.jh1 vs. ExPASy TrEMBL
Match: A0A7J9LEH0 (Uncharacterized protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_006920 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 1.79e-44
Identity = 81/139 (58.27%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 8   LLQAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGN 67
           + QAGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++GN
Sbjct: 10  IFQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGN 69

Query: 68  KIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDN 127
           K D + RR V+KEEG+ FA++NGLLFLE SA+T+QNV E         AF   A  IL N
Sbjct: 70  KCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE---------AFVKTAAKILQN 129

Query: 128 IELGVLDLSNKSSSSRRHY 146
           I+ GV D SN+SS  +  Y
Sbjct: 130 IQEGVFDASNESSGIKIGY 139

[Close]

BLAST of MELO3C035187.jh1 vs. ExPASy TrEMBL
Match: A0A7J8ZMB8 (Uncharacterized protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_011561 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 2.56e-44
Identity = 81/137 (59.12%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 10  QAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKI 69
           QAGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++GNK 
Sbjct: 1   QAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKC 60

Query: 70  DKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIE 129
           D + RR V+KEEG+ FA++NGLLFLE SA+T+QNV E         AF   A  IL NI+
Sbjct: 61  DLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE---------AFVKTAAKILQNIQ 120

Query: 130 LGVLDLSNKSSSSRRHY 146
            GV D SN+SS  +  Y
Sbjct: 121 EGVFDASNESSGIKIGY 128

[Close]

BLAST of MELO3C035187.jh1 vs. TAIR 10
Match: AT4G35860.1 (GTP-binding 2 )

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-37
Identity = 80/136 (58.82%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 71  KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIEL 130
              +R V+KEEGQ FA+++GLLFLE SA+T+QNV E         AF   A  IL NI+ 
Sbjct: 123 LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEE---------AFIETAAKILQNIQD 182

Query: 131 GVLDLSNKSSSSRRHY 147
           GV D+SN+SS  +  Y
Sbjct: 183 GVFDVSNESSGIKIGY 189

[Close]

BLAST of MELO3C035187.jh1 vs. TAIR 10
Match: AT4G35860.2 (GTP-binding 2 )

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-37
Identity = 80/136 (58.82%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 17  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 76

Query: 71  KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIEL 130
              +R V+KEEGQ FA+++GLLFLE SA+T+QNV E         AF   A  IL NI+ 
Sbjct: 77  LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEE---------AFIETAAKILQNIQD 136

Query: 131 GVLDLSNKSSSSRRHY 147
           GV D+SN+SS  +  Y
Sbjct: 137 GVFDVSNESSGIKIGY 143

[Close]

BLAST of MELO3C035187.jh1 vs. TAIR 10
Match: AT4G17170.1 (RAB GTPase homolog B1C )

HSP 1 Score: 138.3 bits (347), Expect = 7.8e-33
Identity = 74/140 (52.86%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+ +++IM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 71  KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIEL 130
              RR V+ EEG+ FA+++GL+F+E SAKT+QNV E         AF   A  I   I+ 
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE---------AFIKTAATIYKKIQD 182

Query: 131 GVLDLSNKSSSSRRHYTDPP 151
           GV D+SN+S   +  Y   P
Sbjct: 183 GVFDVSNESYGIKVGYGGIP 193

[Close]

BLAST of MELO3C035187.jh1 vs. TAIR 10
Match: AT4G17160.1 (RAB GTPase homolog B1A )

HSP 1 Score: 124.8 bits (312), Expect = 9.0e-29
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQE+F+S+TRSYYRG  G LLVYD+TRRETF++L SWL++ R+ A  +++ M++GNK D
Sbjct: 63  AGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNKCD 122

Query: 71  KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYELITNSVVLQAFSIIANNILDNIEL 130
              +R V+ EEG+ FA ++GL+F+E SAKT+ NV E         AF   A  I   I+ 
Sbjct: 123 LEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEE---------AFVETAATIYKRIQD 181

Query: 131 GVLDLSNK 139
           GV+D +N+
Sbjct: 183 GVVDEANE 181

[Close]

BLAST of MELO3C035187.jh1 vs. TAIR 10
Match: AT1G73640.1 (RAB GTPase homolog A6A )

HSP 1 Score: 115.2 bits (287), Expect = 7.1e-26
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 11  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 70
           AGQE F++IT SYYRGA+GALL+YD+TRR TF N+K WL ++R+ A+P+  +++VGNK D
Sbjct: 70  AGQERFRAITSSYYRGALGALLIYDITRRTTFDNIKKWLFELRDFANPETVVVLVGNKSD 129

Query: 71  KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 107
               REV ++EG+  AE  GL FLETSA  + NV E
Sbjct: 130 LRQSREVEEDEGKTLAESEGLYFLETSALENVNVEE 165

The following BLAST results are available for this feature:

BLAST of MELO3C035187.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458689.1	2.75e-65	86.36	PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-2A-like, partial [Cucumi...	[more]
RVW78616.1	2.53e-45	57.64	Ras-related protein RABB1b [Vitis vinifera]	[more]
MBA0870721.1	9.51e-45	57.86	hypothetical protein [Gossypium schwendimanii]	[more]
MBA0857063.1	3.70e-44	58.27	hypothetical protein [Gossypium schwendimanii]	[more]
MBA0712459.1	5.29e-44	59.12	hypothetical protein [Gossypium laxum]	[more]

BLAST of MELO3C035187.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38922	5.7e-36	58.82	Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1	[more]
P36863	1.2e-33	53.52	GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1	[more]
Q39570	1.0e-32	47.98	GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=...	[more]
P49103	1.7e-32	53.96	Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2	[more]
P49104	1.7e-32	53.96	Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1	[more]

BLAST of MELO3C035187.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8F9	1.33e-65	86.36	LOW QUALITY PROTEIN: ras-related protein Rab-2A-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A438H1V5	1.23e-45	57.64	Ras-related protein RABB1b OS=Vitis vinifera OX=29760 GN=RABB1B_1 PE=4 SV=1	[more]
A0A7J9MID0	4.60e-45	57.86	Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_016390 PE=4...	[more]
A0A7J9LEH0	1.79e-44	58.27	Uncharacterized protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_...	[more]
A0A7J8ZMB8	2.56e-44	59.12	Uncharacterized protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_011561 P...	[more]

BLAST of MELO3C035187.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35860.1	4.0e-37	58.82	GTP-binding 2	[more]
AT4G35860.2	4.0e-37	58.82	GTP-binding 2	[more]
AT4G17170.1	7.8e-33	52.86	RAB GTPase homolog B1C	[more]
AT4G17160.1	9.0e-29	49.22	RAB GTPase homolog B1A	[more]
AT1G73640.1	7.1e-26	56.25	RAB GTPase homolog A6A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 93..115 score: 34.62 coord: 58..71 score: 41.78
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 2..118 e-value: 1.1E-7 score: -2.7
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 2..127 e-value: 4.3E-32 score: 122.6
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 11..138
None	No IPR available	PANTHER	PTHR47979:SF38	RAB2A, MEMBER RAS ONCOGENE FAMILY	coord: 11..138
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..139 score: 21.682787
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 1..118 e-value: 0.0043 score: -77.2
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 11..110 e-value: 3.1E-32 score: 111.4
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..125 score: 12.704347
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 11..109 e-value: 6.0E-15 score: 53.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..129 e-value: 1.7E-38 score: 133.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035187.jh1.t1	MELO3C035187.jh1.t1	mRNA
MELO3C035187.jh1.t2	MELO3C035187.jh1.t2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding