MELO3C035157.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C035157.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	CACTA en-spm transposon protein
Location	chr11: 26873692 .. 26874182 (-)
RNA-Seq Expression	MELO3C035157.jh1
Synteny	MELO3C035157.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCTCCCTTGAGTATAGACATGGAGTGACCTAATTTGCTTATTAAATGTTTGTTTTCTATGTCCACAACCATTATGTCATCGTCAGATCCACGTAATAATTTTATGGAGACGGACGTTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCACGGGAGAGTCGTTGTCTGTGGGCAACAACACGGGTGAGTCTAAGAATTTTCTTCATTTTAATTTACGATTATTTCATGTTCTTTTTTCTAACATTATATGTTATTATCGATTTATTGAGCAGGGTCTTCTTCTCAACAACCTGAGACTTCGACACCTAGGAGATGTACGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGTGCATTCCGATGATGATCTCCCCTGGAGCGGAGAAGCCTATTTCCCCACACGCCGTTCCCTTCAGCCAAGCGATAGACATGTGCGTGTGAAAGACATTTTCCGTCTGCTATCTTAAGTAG

mRNA sequence

AGTTCTCCCTTGAGTATAGACATGGAGTGACCTAATTTGCTTATTAAATGTTTGTTTTCTATGTCCACAACCATTATGTCATCGTCAGATCCACGTAATAATTTTATGGAGACGGACGTTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCACGGGAGAGTCGTTGTCTGTGGGCAACAACACGGGGTCTTCTTCTCAACAACCTGAGACTTCGACACCTAGGAGATGTACGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGTGCATTCCGATGATGATCTCCCCTGGAGCGGAGAAGCCTATTTCCCCACACGCCGTTCCCTTCAGCCAAGCGATAGACATGTGCGTGTGAAAGACATTTTCCGTCTGCTATCTTAAGTAG

Coding sequence (CDS)

ATGTCCACAACCATTATGTCATCGTCAGATCCACGTAATAATTTTATGGAGACGGACGTTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCACGGGAGAGTCGTTGTCTGTGGGCAACAACACGGGGTCTTCTTCTCAACAACCTGAGACTTCGACACCTAGGAGATGTACGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGTGCATTCCGATGATGATCTCCCCTGGAGCGGAGAAGCCTATTTCCCCACACGCCGTTCCCTTCAGCCAAGCGATAGACATGTGCGTGTGA

Protein sequence

MSTTIMSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSRLLELERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMCV

Homology

[Close]

BLAST of MELO3C035157.jh1 vs. NCBI nr
Match: KAA0059956.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK07599.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (473), Expect = 1.61e-57
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 6   MSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSRLLE 65
           MSSSDPRNNFMETDV+FLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSRLLE
Sbjct: 1   MSSSDPRNNFMETDVIFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSRLLE 60

Query: 66  LERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMCV 103
           LERHVAING IPMMISPGAEKPIS HAVPFSQAID+CV
Sbjct: 61  LERHVAINGRIPMMISPGAEKPISLHAVPFSQAIDVCV 98

[Close]

BLAST of MELO3C035157.jh1 vs. NCBI nr
Match: KAA0054221.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 1.26e-42
Identity = 81/100 (81.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 3   TTIMSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSR 62
           T IMSSS PRNNFMETD MFLEFEDDLDNITG SLSVG+NTGSSSQQP T T RRC QSR
Sbjct: 240 TAIMSSSYPRNNFMETDAMFLEFEDDLDNITGASLSVGDNTGSSSQQPATPTLRRCAQSR 299

Query: 63  LLELERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMC 102
           LLELERHVAIN C PM I+PGAEK I  H V FSQAI MC
Sbjct: 300 LLELERHVAINECTPMTIAPGAEKHIFSHVVGFSQAIGMC 339

[Close]

BLAST of MELO3C035157.jh1 vs. NCBI nr
Match: TYK15043.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 1.52e-42
Identity = 81/100 (81.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 3   TTIMSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSR 62
           T IMSSS PRNNFMETD MFLEFEDDLDNITG SLSVG+NTGSSSQQP T T RRC QSR
Sbjct: 253 TAIMSSSYPRNNFMETDAMFLEFEDDLDNITGASLSVGDNTGSSSQQPATPTLRRCAQSR 312

Query: 63  LLELERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMC 102
           LLELERHVAIN C PM I+PGAEK I  H V FSQAI MC
Sbjct: 313 LLELERHVAINECTPMTIAPGAEKHIFSHVVGFSQAIGMC 352

[Close]

BLAST of MELO3C035157.jh1 vs. NCBI nr
Match: TYK10969.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 3.58e-42
Identity = 77/98 (78.57%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 6   MSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSRLLE 65
           MSSS PRNNFME DVMFLEFEDDLDNI G S S+G+NT SSSQQP T TP+R  QSRLLE
Sbjct: 1   MSSSYPRNNFMEMDVMFLEFEDDLDNIVGGSSSMGDNTESSSQQPVTPTPKRRAQSRLLE 60

Query: 66  LERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMCV 103
           LERHVAING IPM I+PGAEKPI PHAV FSQAI + V
Sbjct: 61  LERHVAINGRIPMTIAPGAEKPIFPHAVRFSQAISVFV 98

[Close]

BLAST of MELO3C035157.jh1 vs. NCBI nr
Match: KAA0038961.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 5.43e-40
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MST--TIMSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNT-GSSSQQPETSTPRR 60
           MST  TIMSSS  RNNFMETD MFLEFE+DLDNI G S S+G+NT GSSSQQP T TPRR
Sbjct: 100 MSTLYTIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRR 159

Query: 61  CTQSRLLELERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMCV 103
             QSRLLELERHVAINGCIPM I+ GA+KPISPH V FSQ I +CV
Sbjct: 160 RAQSRLLELERHVAINGCIPMTIAHGAKKPISPHTVRFSQTIGVCV 205

[Close]

BLAST of MELO3C035157.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V0E6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G00420 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 7.81e-58
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 6   MSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSRLLE 65
           MSSSDPRNNFMETDV+FLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSRLLE
Sbjct: 1   MSSSDPRNNFMETDVIFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSRLLE 60

Query: 66  LERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMCV 103
           LERHVAING IPMMISPGAEKPIS HAVPFSQAID+CV
Sbjct: 61  LERHVAINGRIPMMISPGAEKPISLHAVPFSQAIDVCV 98

[Close]

BLAST of MELO3C035157.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UL05 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001630 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 6.08e-43
Identity = 81/100 (81.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 3   TTIMSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSR 62
           T IMSSS PRNNFMETD MFLEFEDDLDNITG SLSVG+NTGSSSQQP T T RRC QSR
Sbjct: 240 TAIMSSSYPRNNFMETDAMFLEFEDDLDNITGASLSVGDNTGSSSQQPATPTLRRCAQSR 299

Query: 63  LLELERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMC 102
           LLELERHVAIN C PM I+PGAEK I  H V FSQAI MC
Sbjct: 300 LLELERHVAINECTPMTIAPGAEKHIFSHVVGFSQAIGMC 339

[Close]

BLAST of MELO3C035157.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CT09 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00870 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 7.35e-43
Identity = 81/100 (81.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 3   TTIMSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSR 62
           T IMSSS PRNNFMETD MFLEFEDDLDNITG SLSVG+NTGSSSQQP T T RRC QSR
Sbjct: 253 TAIMSSSYPRNNFMETDAMFLEFEDDLDNITGASLSVGDNTGSSSQQPATPTLRRCAQSR 312

Query: 63  LLELERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMC 102
           LLELERHVAIN C PM I+PGAEK I  H V FSQAI MC
Sbjct: 313 LLELERHVAINECTPMTIAPGAEKHIFSHVVGFSQAIGMC 352

[Close]

BLAST of MELO3C035157.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CL57 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00570 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 1.73e-42
Identity = 77/98 (78.57%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 6   MSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNTGSSSQQPETSTPRRCTQSRLLE 65
           MSSS PRNNFME DVMFLEFEDDLDNI G S S+G+NT SSSQQP T TP+R  QSRLLE
Sbjct: 1   MSSSYPRNNFMEMDVMFLEFEDDLDNIVGGSSSMGDNTESSSQQPVTPTPKRRAQSRLLE 60

Query: 66  LERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMCV 103
           LERHVAING IPM I+PGAEKPI PHAV FSQAI + V
Sbjct: 61  LERHVAINGRIPMTIAPGAEKPIFPHAVRFSQAISVFV 98

[Close]

BLAST of MELO3C035157.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TBG7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00370 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 2.63e-40
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MST--TIMSSSDPRNNFMETDVMFLEFEDDLDNITGESLSVGNNT-GSSSQQPETSTPRR 60
           MST  TIMSSS  RNNFMETD MFLEFE+DLDNI G S S+G+NT GSSSQQP T TPRR
Sbjct: 100 MSTLYTIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRR 159

Query: 61  CTQSRLLELERHVAINGCIPMMISPGAEKPISPHAVPFSQAIDMCV 103
             QSRLLELERHVAINGCIPM I+ GA+KPISPH V FSQ I +CV
Sbjct: 160 RAQSRLLELERHVAINGCIPMTIAHGAKKPISPHTVRFSQTIGVCV 205

The following BLAST results are available for this feature:

BLAST of MELO3C035157.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059956.1	1.61e-57	95.92	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK07599.1 CACTA en-...	[more]
KAA0054221.1	1.26e-42	81.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK15043.1	1.52e-42	81.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK10969.1	3.58e-42	78.57	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0038961.1	5.43e-40	76.42	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035157.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C035157.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0E6	7.81e-58	95.92	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UL05	6.08e-43	81.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CT09	7.35e-43	81.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CL57	1.73e-42	78.57	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TBG7	2.63e-40	76.42	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C035157.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035157.jh1.t1	MELO3C035157.jh1.t1	mRNA