MELO3C035101 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035101
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr11: 20489757 .. 20492341 (+)
RNA-Seq Expression	MELO3C035101
Synteny	MELO3C035101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAACACGAGTTGGCGTCTATTGTAAATGCGTTTATCGCATCCCAACGACAGTTGTTACTAATGTTGGAGCTCTTGAAGAACGATACGAAGAGGATAACGCACATCCCGTATGAAACTAGGCATAGGATTAGACAATCAGCTTACTTTCGCATGATTCATGGCTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGAAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCATGATGTGAAAAATCGTGTCATTCAGCGAGAGTTCATGCGGTCGAGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTAGCCGTCATTCGACTTCATGAGGAGCTTTTGAAAAAACCACAACCAGTGCCTAATGAATGCACAGATCAAAGATGGAGATGGTTTGAGGTACACATTTATCTCGAACTACGTACTTCCAACACAACGACGTTAGTTCTTCTCAATAATTTGTAGTTATGCGTTGCAGAATTGCCTAGGTGCATTAGATGGAACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGAGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTCGTTTACGTACTTGCCGGGTTGAGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGATCTAATGGGCTTAAGGTGGCCAAGGGTAAGTAACAACGGCATTGTACCTATGAATGCAATTTTGCAAGTAACAGCTGCGAAATTTTAATCGTGCATTGTGATCACAGGCTATTACTACCTGGTTGATGTCGGGTACCCAAATGCGGAGGGTTTTCTGGCACCATACAGAGGCCAACGCTATCACTTACAAGAATGACGTGGCCCTGAAAATGCACCTTCAACGTCGAAAGAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGAGCGATACTGCGGGGAAAGTCATACTACCCTGTAGAAGTTCAATGTCGCACAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGGGAGATGACAAACTTTGATATACAAGACAACATAGATGAGGTTGATTCCACCCACGCGACTACTGCCGCCGATGACATACATTACATAGAGACGTCGAATGAGTGGAGTCAATGGAGGGACGACCTTGCAGAAGAAATGTTTAGTGAATGGGAGTTGCTAACCAATAGAAAAATTAAATGTTCCCCGTTCATTTTCATACTTAAGTAGTGATTGCAATAGGTCTTATTTTGTCATAGCTTTTGTAACATGATTATTTTGAATGTATTGGTTACGCAAGTAACTTACTGCCAAACTGTTTTTCAGTAGGAGTTCACTGTACTATGAAACTAATCGTATGTATGTTATCTAATCATACGGAACTTAATGAAACTAATATGTTTGTGTTTTACTTCTAGCATGACAAGTTCATCGAGACTACCTAAACATACTTGGACTAAAGAGGAAGAGGCAGGCCTTGTGGAGTTGGTCAATGCTGGTGGGTGGAGGTCCGACAATGGGACCTTTCACCATGGGTACTTAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACCATCGATAGCCGAATCAAATTGATGAAGAGAATGTTCCATGCACTTGCGAAGATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCACGGAAAAAGAAGTCTTTGACGATTGGGTAAAGGTGCGTTATTAGTCATTTGAACACTTGTACTATTATTTCAATACATGGACTAATAGTTTATTATTGCACTTATATAGAGTCATCCGACGGCGAAAGGCCTCCTTAATAAGTCGTTTGCCCACTATGACGAATTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCTGGGTTGAGAGTTTTGCGGACATTGGATCAAACCATCCTGTTGGGTATGACGCATTTCCTGCTGACGCTGCGCCAGATACGGACTTCCCGCCAATGTACAGTCCGGGATTGAACATATCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAATGAACGTAGGAATGTTTCAAGCAGGTCTAAGCGGAAACGTCCAAGACATGCCATAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTACGGAAATGAACAATTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGACGCTAGCCAAACACGTCAAGAGATTGTTCGACAATTGGAGGCCATCTCTGAGCTCACATTGATGGATAGGTGTCACTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTCCGGACAATATGAAGTACCCGTACTGCAACATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTAATGAAACTTTTCTTACTTGGAC

mRNA sequence

ATGGACGAACACGAGTTGGCGTCTATTGTAAATGCGTTTATCGCATCCCAACGACAGTTGTTACTAATGTTGGAGCTCTTGAAGAACGATACGAAGAGGATAACGCACATCCCGTATGAAACTAGGCATAGGATTAGACAATCAGCTTACTTTCGCATGATTCATGGCTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGAAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCATGATGTGAAAAATCGTGTCATTCAGCGAGAGTTCATGCGGTCGAGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTAGCCGTCATTCGACTTCATGAGGAGCTTTTGAAAAAACCACAACCAGTGCCTAATGAATGCACAGATCAAAGATGGAGATGGTTTGAGAGTCATCCGACGGCGAAAGGCCTCCTTAATAAGTCGTTTGCCCACTATGACGAATTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCTGGGTTGAGAGTTTTGCGGACATTGGATCAAACCATCCTGTTGGGTATGACGCATTTCCTGCTGACGCTGCGCCAGATACGGACTTCCCGCCAATGTACAGTCCGGGATTGAACATATCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAATGAACGTAGGAATGTTTCAAGCAGGTCTAAGCGGAAACGTCCAAGACATGCCATAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTACGGAAATGAACAATTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGACGCTAGCCAAACACGTCAAGAGATTGTTCGACAATTGGAGGCCATCTCTGAGCTCACATTGATGGATAGGTGTCACTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTCCGGACAATATGAAGTACCCGTACTGCAACATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTAATGAAACTTTTCTTACTTGGAC

Coding sequence (CDS)

ATGGACGAACACGAGTTGGCGTCTATTGTAAATGCGTTTATCGCATCCCAACGACAGTTGTTACTAATGTTGGAGCTCTTGAAGAACGATACGAAGAGGATAACGCACATCCCGTATGAAACTAGGCATAGGATTAGACAATCAGCTTACTTTCGCATGATTCATGGCTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGAAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCATGATGTGAAAAATCGTGTCATTCAGCGAGAGTTCATGCGGTCGAGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTAGCCGTCATTCGACTTCATGAGGAGCTTTTGAAAAAACCACAACCAGTGCCTAATGAATGCACAGATCAAAGATGGAGATGGTTTGAGAGTCATCCGACGGCGAAAGGCCTCCTTAATAAGTCGTTTGCCCACTATGACGAATTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCTGGGTTGAGAGTTTTGCGGACATTGGATCAAACCATCCTGTTGGGTATGACGCATTTCCTGCTGACGCTGCGCCAGATACGGACTTCCCGCCAATGTACAGTCCGGGATTGAACATATCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAATGAACGTAGGAATGTTTCAAGCAGGTCTAAGCGGAAACGTCCAAGACATGCCATAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTACGGAAATGAACAATTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGACGCTAGCCAAACACGTCAAGAGATTGTTCGACAATTGGAGGCCATCTCTGAGCTCACATTGATGGATAGGTGTCACTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTCCGGACAATATGAAGTACCCGTACTGCAACATCATTCTTCAAGAAAACCGATGA

Protein sequence

MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQSAYFRMIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRSSETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFESHPTAKGLLNKSFAHYDELSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDFPPMYSPGLNISPDDLMETRTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFHRIAEWPILQRQDASQTRQEIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQENR

Homology

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BLAST of MELO3C035101 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 539.7 bits (1389), Expect = 1.9e-149
Identity = 329/644 (51.09%), Postives = 337/644 (52.33%), Query Frame = 0


Query: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQSAYFRMIHGSDLV 60
           MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQ AYFRMIHGSDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120
           CRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVAMFLHILAHDVKNRVIQREFMRS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 SETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE------------------ 180
            ETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFE                  
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 DRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLK 300

Query: 301 ------------------------------------------------------------ 355
                                                                       
Sbjct: 301 GRWAILRGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTK 360

[Close]

BLAST of MELO3C035101 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 458.0 bits (1177), Expect = 7.5e-125
Identity = 302/681 (44.35%), Postives = 312/681 (45.81%), Query Frame = 0


Query: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQSAYFRMIHGSDLV 60
           MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQ AYFRMIHG    
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHG---- 60

Query: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120
                               TIAGLTST+VVDVEEMVAMFLHILAHDVK+RVI+REFMRS
Sbjct: 61  --------------------TIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRS 120

Query: 121 SETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE------------------ 180
            ETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE                  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 YLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLK 300

Query: 301 ------------------------------------------------------------ 355
                                                                       
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIH 360

[Close]

BLAST of MELO3C035101 vs. NCBI nr
Match: KAA0046928.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 414.8 bits (1065), Expect = 7.2e-112
Identity = 233/354 (65.82%), Postives = 243/354 (68.64%), Query Frame = 0


Query: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQSAYFRMIHGSDLV 60
           MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQ AYFRMIHGSDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120
           C                     +G                     +D KN          
Sbjct: 61  C---------------------SGFG------------------WNDEKNA--------- 120

Query: 121 SETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFESHPTAKGLLNKSFAHYDE 180
                                L KK   +              HP AKGLLNKSF HYDE
Sbjct: 121 -------------------SSLRKKSLTI-------------GHPAAKGLLNKSFVHYDE 180

Query: 181 LSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDFPPMYSPGLNISPDDLMET 240
           LSYVFGKDRATGG  E FADIGSN P G+DAF ADA PDTDFPP YSPGLN+SPDDLMET
Sbjct: 181 LSYVFGKDRATGGRAEIFADIGSNDPPGFDAFAADAMPDTDFPPTYSPGLNMSPDDLMET 240

Query: 241 RTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFHRIAEWPILQRQDASQTRQ 300
           RTARV+ERRNVSS SKRKRP HA DSGDIVRTAIEYGNEQ HRIAEWPILQRQDA+QTRQ
Sbjct: 241 RTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQ 274

Query: 301 EIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQENR 355
           EIVR LEAI ELTLMDRC LMRILMRNVDDMKAFLEVPD+MKYPYC +ILQEN+
Sbjct: 301 EIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCTLILQENQ 274

[Close]

BLAST of MELO3C035101 vs. NCBI nr
Match: KAA0061841.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 6.6e-105
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 163 SHPTAKGLLNKSFAHYDELSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDF 222
           SHPTAKGLLNKSFAHYDELSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDF
Sbjct: 107 SHPTAKGLLNKSFAHYDELSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDF 166

Query: 223 PPMYSPGLNISPDDLMETRTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFH 282
           PPMYSPGLNISPDDLMETRTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFH
Sbjct: 167 PPMYSPGLNISPDDLMETRTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFH 226

Query: 283 RIAEWPILQRQDASQTRQEIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMK 342
           RIAEWPILQRQDASQTRQEIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMK
Sbjct: 227 RIAEWPILQRQDASQTRQEIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMK 286

Query: 343 YPYCNIILQENR 355
           YPYCNIILQENR
Sbjct: 287 YPYCNIILQENR 298

[Close]

BLAST of MELO3C035101 vs. NCBI nr
Match: KAA0065737.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 349.7 bits (896), Expect = 2.9e-92
Identity = 173/192 (90.10%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 163 SHPTAKGLLNKSFAHYDELSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDF 222
           SHP AKGLLNKSF HYDELSYVFGKDRATGG  ESFADIGSN P GYDAF ADA PDTDF
Sbjct: 107 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDF 166

Query: 223 PPMYSPGLNISPDDLMETRTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFH 282
           PPMYSPGLN+SPDDLMETRTARV+ERRNVSS SKRKRP HA DSGDIVRTAIEYGNEQ H
Sbjct: 167 PPMYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLH 226

Query: 283 RIAEWPILQRQDASQTRQEIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMK 342
           RIAEWPILQRQDA+QTRQ+IVRQLEAI ELTLMDRC LMRILMRNVDDMKAFLEVPDNMK
Sbjct: 227 RIAEWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMK 286

Query: 343 YPYCNIILQENR 355
           YPYC+IILQENR
Sbjct: 287 YPYCSIILQENR 298

[Close]

BLAST of MELO3C035101 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 9.4e-150
Identity = 329/644 (51.09%), Postives = 337/644 (52.33%), Query Frame = 0


Query: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQSAYFRMIHGSDLV 60
           MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQ AYFRMIHGSDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120
           CRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVAMFLHILAHDVKNRVIQREFMRS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 SETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE------------------ 180
            ETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFE                  
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 DRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLK 300

Query: 301 ------------------------------------------------------------ 355
                                                                       
Sbjct: 301 GRWAILRGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTK 360

[Close]

BLAST of MELO3C035101 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 3.6e-125
Identity = 302/681 (44.35%), Postives = 312/681 (45.81%), Query Frame = 0


Query: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQSAYFRMIHGSDLV 60
           MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQ AYFRMIHG    
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHG---- 60

Query: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120
                               TIAGLTST+VVDVEEMVAMFLHILAHDVK+RVI+REFMRS
Sbjct: 61  --------------------TIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRS 120

Query: 121 SETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE------------------ 180
            ETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE                  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 YLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLK 300

Query: 301 ------------------------------------------------------------ 355
                                                                       
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIH 360

[Close]

BLAST of MELO3C035101 vs. ExPASy TrEMBL
Match: A0A5A7TVM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00960 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 3.5e-112
Identity = 233/354 (65.82%), Postives = 243/354 (68.64%), Query Frame = 0


Query: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQSAYFRMIHGSDLV 60
           MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQ AYFRMIHGSDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120
           C                     +G                     +D KN          
Sbjct: 61  C---------------------SGFG------------------WNDEKNA--------- 120

Query: 121 SETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFESHPTAKGLLNKSFAHYDE 180
                                L KK   +              HP AKGLLNKSF HYDE
Sbjct: 121 -------------------SSLRKKSLTI-------------GHPAAKGLLNKSFVHYDE 180

Query: 181 LSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDFPPMYSPGLNISPDDLMET 240
           LSYVFGKDRATGG  E FADIGSN P G+DAF ADA PDTDFPP YSPGLN+SPDDLMET
Sbjct: 181 LSYVFGKDRATGGRAEIFADIGSNDPPGFDAFAADAMPDTDFPPTYSPGLNMSPDDLMET 240

Query: 241 RTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFHRIAEWPILQRQDASQTRQ 300
           RTARV+ERRNVSS SKRKRP HA DSGDIVRTAIEYGNEQ HRIAEWPILQRQDA+QTRQ
Sbjct: 241 RTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQ 274

Query: 301 EIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCNIILQENR 355
           EIVR LEAI ELTLMDRC LMRILMRNVDDMKAFLEVPD+MKYPYC +ILQEN+
Sbjct: 301 EIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCTLILQENQ 274

[Close]

BLAST of MELO3C035101 vs. ExPASy TrEMBL
Match: A0A5A7V7X0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00590 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 3.2e-105
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 163 SHPTAKGLLNKSFAHYDELSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDF 222
           SHPTAKGLLNKSFAHYDELSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDF
Sbjct: 107 SHPTAKGLLNKSFAHYDELSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDF 166

Query: 223 PPMYSPGLNISPDDLMETRTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFH 282
           PPMYSPGLNISPDDLMETRTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFH
Sbjct: 167 PPMYSPGLNISPDDLMETRTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFH 226

Query: 283 RIAEWPILQRQDASQTRQEIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMK 342
           RIAEWPILQRQDASQTRQEIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMK
Sbjct: 227 RIAEWPILQRQDASQTRQEIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMK 286

Query: 343 YPYCNIILQENR 355
           YPYCNIILQENR
Sbjct: 287 YPYCNIILQENR 298

[Close]

BLAST of MELO3C035101 vs. ExPASy TrEMBL
Match: A0A5A7VF53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00250 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.4e-92
Identity = 173/192 (90.10%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 163 SHPTAKGLLNKSFAHYDELSYVFGKDRATGGWVESFADIGSNHPVGYDAFPADAAPDTDF 222
           SHP AKGLLNKSF HYDELSYVFGKDRATGG  ESFADIGSN P GYDAF ADA PDTDF
Sbjct: 107 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDF 166

Query: 223 PPMYSPGLNISPDDLMETRTARVNERRNVSSRSKRKRPRHAIDSGDIVRTAIEYGNEQFH 282
           PPMYSPGLN+SPDDLMETRTARV+ERRNVSS SKRKRP HA DSGDIVRTAIEYGNEQ H
Sbjct: 167 PPMYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLH 226

Query: 283 RIAEWPILQRQDASQTRQEIVRQLEAISELTLMDRCHLMRILMRNVDDMKAFLEVPDNMK 342
           RIAEWPILQRQDA+QTRQ+IVRQLEAI ELTLMDRC LMRILMRNVDDMKAFLEVPDNMK
Sbjct: 227 RIAEWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMK 286

Query: 343 YPYCNIILQENR 355
           YPYC+IILQENR
Sbjct: 287 YPYCSIILQENR 298

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BLAST of MELO3C035101 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-12
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 51  FRMIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKN 110
           +++++G +  C ++ RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 111 RVIQREFMRSSETISRHFNMVLLAVIRLHEELLKKPQPVPNECTD 156
           R +Q  F  S ETISRHFN VL AVI + ++  +     PN  +D
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAISKDFFQ-----PNSNSD 131

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BLAST of MELO3C035101 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-06
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 54  IHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAMFLHILAHDVKNRVI 113
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 114 QREFMRSSETISRHFNMVLLAVIRLHEELLK 145
              F  + ETI R F+ VL A+ RL  E ++
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIR 107

The following BLAST results are available for this feature:

BLAST of MELO3C035101 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034843.1	1.9e-149	51.09	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN34114.1	7.5e-125	44.35	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0046928.1	7.2e-112	65.82	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0061841.1	6.6e-105	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK15415.1 retrotransposon p...	[more]
KAA0065737.1	2.9e-92	90.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWD8	9.4e-150	51.09	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCB5	3.6e-125	44.35	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7TVM3	3.5e-112	65.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V7X0	3.2e-105	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VF53	1.4e-92	90.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C035101 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.8e-12	37.14	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	2.6e-06	35.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 21..163
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 21..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035101.1	MELO3C035101.1	mRNA