MELO3C035053.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C035053.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTrigger factor
Locationchr11: 18534148 .. 18536141 (+)
RNA-Seq ExpressionMELO3C035053.jh1
SyntenyMELO3C035053.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGACCTGTGCAAGTCTTTTCCCAGCTTCTTCTTCAGACACATAGCCCTTGGTGATGTACTTCTGGAAGGGTGGAAACAAAAGTCTAAAGAGGGGAATGTGCTCTCTAAACAATCCTGTTGTGGCAATGCAACCAGGGTAGAGAGAAGCAAAAGTTATTCCCGTTTCTTCATGATATCTCCTGTGGAGCTCTTGCATGGTGAGCATGTTGCATACTTTGCTATCCTTGTAGGCCTTTGCTCCATCAAACTCTCCTCCATCTATCATGGTCGAGCTGTTCACACCATTCAAACCACTGGCTAAGCCTCTCAGATCACCCAAGTTTGCTTTTGGGGGCACGTTTCCAGCCAATGTGTTTGTGTTACCTGGAAATCAAACACAAAGTTTGTGATACATTCAGCTTGTTTGAAATAACCTTTTTCGAGCATGTTTGACCAAAGGAGTTGGAGCGGAAAGGAATGGGCTTCAACTAAACTCTATGTTTAATCCAAAGAATTTGTGAGCTACACAACTAGAAAAGATCAATTATATACTTAAGAACTCCTTACGTTGTGAGCCACAACTTCATGCTCTTCAGAATTCACAACTCTACTCCTTTCTCAAAACACCCTTTAAATGCAAAACACTTTTGTAAGAACCTAGAAAGTCATTCATCTTTCCTGTTCTGGTAGTCCGTATAAATGTGATGTTGAATGCTCTCAATTAGTACCTGTGATGGAGCCTACAATTATTACACGCTTGGATGGATAATCTGATTGCTTTATGTCATCGAGCAGCAGCCGCGTGAGGAGAAAGTGACCAAGGTGGTTAGTCCCAGCACTAAGTTCAAACCCTTCAGCGGTGAAAGTTGGCTCCTTTGCAGTCGGCAAATATACAGCAGCATTGCAAACAAGCACATCAAGAGGCATACCCGATCGACGGAAGCTATCCACAAATTGCCTTATACTCTCAAGCGAGGCAAGGTCTAGATGCATAATAGTATAGTTTTCCTTAGCCACGCCTGCTGATTTTGCTGCCATTTGAGCTTTAAGGAAGTTCCTGCATGCCATAATTATATGCCATTTTCCTGTTTCAGCTAGAGCCTTGGCCGTAGCTAGACCCAGTCCTGAGGAAGCTCCTGTGATTATAACATTTCCTTTCCTCAACGTTTTGTTTACTTCCTGTGGAGCCTGTTTGATTTCTGAGACTGATGCAGTTTGGGCTCTAACAGCTCCAACAGGTACTCTAACTTCCTAAATGTATGTTGAATAGAACATTCATATTACAAACAAAACATTTCTACCATCTTTGGGGGTGGGGGGCGTAAAATAAAACCTGATAATTGAATACGCACATATTACCTTATTTCTGTATATGAGAGATTTTGATTTAACTTCAATATGCACAGAAAATGGAACTTCTGAAAGGCCAGTGTTCTTCAGAACAAAGGTTCCAGCTGGATATACGTCTTTGTGGATGGAAATTTTGGGAGAAAAAGAGACAGCTTGTAGAGCCATGAGAAGAAAATAGGAGAGTTGCTGAGAGAGCTTTCAGGAGCAGATCACATGAGATGCTTGCAAGAGAAATTATGGAATGGAAGGAGCTGAAATACTGGCATCTGTTTGTTTTGGAGATATACAATATTCTGGCTCCTATACTTGCCACGTTGGCCTCTTTCATCCAATCAGGTTCACCATTGGACTCTCTAATTTTCTTGTTGATTAAAGATCAGTTGTCTAGACTATTCTAAATACTTTGGGTCATTGTAGTGGAGGCCCAACATGGTAAGGTTGGGTCCAAATGGTCCAGTTTTGAAATATTGGGATAGCTAATTTTGAGTAAATTCAGAACTTTTTTGGAAGATCATCCTAATTAAAAATGGCCACGAATAGAAACGAACTTGCCCTTCCACAAGATATGTTCTGGTATCCAAAATAATATAAGACAAACTTTCTTTACCACACTACTAAAAATTTTGCGTGGTTGCAGTAACTCATCCTTAAATCCCACGC

mRNA sequence

ATGACTGACCTGTGCAAGTCTTTTCCCAGCTTCTTCTTCAGACACATAGCCCTTGGTGATGTACTTCTGGAAGGGTGGAAACAAAAGTCTAAAGAGGGGAATGTGCTCTCTAAACAATCCTGTTGTGGCAATGCAACCAGGGTAGAGAGAAGCAAAAGTTATTCCCGTTTCTTCATGATATCTCCTGTGGAGCTCTTGCATGGTGAGCATGTTGCATACTTTGCTATCCTTGTAGGCCTTTGCTCCATCAAACTCTCCTCCATCTATCATGGTCGAGCTGTTCACACCATTCAAACCACTGGCTAAGCCTCTCAGATCACCCAAGTTTGCTTTTGGGGGCACGTTTCCAGCCAATCAGCCGCGTGAGGAGAAAGTGACCAAGGTGGTTAGTCCCAGCACTAAGTTCAAACCCTTCAGCGGTGAAAGTTGGCTCCTTTGCAGTCGGCAAATATACAGCAGCATTGCAAACAAGCACATCAAGAGGCATACCCGATCGACGGAAGCTATCCACAAATTGCCTTATACTCTCAAGCGAGGCAAGTTCCTGCATGCCATAATTATATGCCATTTTCCTGTTTCAGCTAGAGCCTTGGCCGTAGCTAGACCCAGTCCTGAGGAAGCTCCTGTGATTATAACATTTCCTTTCCTCAACGTTTTGTTTACTTCCTGTGGAGCCTGTTTGATTTCTGAGACTGATGCAGTTTGGGCTCTAACAGCTCCAACAGAAAATGGAACTTCTGAAAGGCCAGTGTTCTTCAGAACAAAGGTTCCAGCTGGATATACGTCTTTGTGGATGGAAATTTTGGGAGAAAAAGAGACAGCTTGTAGAGCCATGAGAAGAAAATAGGAGAGTTGCTGAGAGAGCTTTCAGGAGCAGATCACATGAGATGCTTGCAAGAGAAATTATGGAATGGAAGGAGCTGAAATACTGGCATCTGTTTGTTTTGGAGATATACAATATTCTGGCTCCTATACTTGCCACGTTGGCCTCTTTCATCCAATCAGGTTCACCATTGGACTCTCTAATTTTCTTGTTGATTAAAGATCAGTTGTCTAGACTATTCTAAATACTTTGGGTCATTGTAGTGGAGGCCCAACATGGTAAGGTTGGGTCCAAATGGTCCAGTTTTGAAATATTGGGATAGCTAATTTTGAGTAAATTCAGAACTTTTTTGGAAGATCATCCTAATTAAAAATGGCCACGAATAGAAACGAACTTGCCCTTCCACAAGATATGTTCTGGTATCCAAAATAATATAAGACAAACTTTCTTTACCACACTACTAAAAATTTTGCGTGGTTGCAGTAACTCATCCTTAAATCCCACGC

Coding sequence (CDS)

ATGGTCGAGCTGTTCACACCATTCAAACCACTGGCTAAGCCTCTCAGATCACCCAAGTTTGCTTTTGGGGGCACGTTTCCAGCCAATCAGCCGCGTGAGGAGAAAGTGACCAAGGTGGTTAGTCCCAGCACTAAGTTCAAACCCTTCAGCGGTGAAAGTTGGCTCCTTTGCAGTCGGCAAATATACAGCAGCATTGCAAACAAGCACATCAAGAGGCATACCCGATCGACGGAAGCTATCCACAAATTGCCTTATACTCTCAAGCGAGGCAAGTTCCTGCATGCCATAATTATATGCCATTTTCCTGTTTCAGCTAGAGCCTTGGCCGTAGCTAGACCCAGTCCTGAGGAAGCTCCTGTGATTATAACATTTCCTTTCCTCAACGTTTTGTTTACTTCCTGTGGAGCCTGTTTGATTTCTGAGACTGATGCAGTTTGGGCTCTAACAGCTCCAACAGAAAATGGAACTTCTGAAAGGCCAGTGTTCTTCAGAACAAAGGTTCCAGCTGGATATACGTCTTTGTGGATGGAAATTTTGGGAGAAAAAGAGACAGCTTGTAGAGCCATGAGAAGAAAATAG

Protein sequence

MVELFTPFKPLAKPLRSPKFAFGGTFPANQPREEKVTKVVSPSTKFKPFSGESWLLCSRQIYSSIANKHIKRHTRSTEAIHKLPYTLKRGKFLHAIIICHFPVSARALAVARPSPEEAPVIITFPFLNVLFTSCGACLISETDAVWALTAPTENGTSERPVFFRTKVPAGYTSLWMEILGEKETACRAMRRK
Homology
[Close]
BLAST of MELO3C035053.jh1 vs. NCBI nr
Match: KAF1896447.1 (hypothetical protein Lal_00034145 [Lupinus albus])

HSP 1 Score: 76.6 bits (187), Expect = 7.91e-13
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 0 

Query: 1   MVELFTPFKPLAKPLRSPKFAFGGTFPANQPREEKVTKVVSPSTKFKPFSGESWLLCSRQ 60
           M E+F+PFKP A PL+SP+ +      +N+    K  +   P+   KP S  ++ L    
Sbjct: 156 MDEVFSPFKPPANPLKSPRSS------SNRRERRKCPRWFVPTLSSKP-SAVNFSLAMPA 215

Query: 61  IYSSIANKHIKRHTRSTEAIHKLPYTLKRGKFLHAIIICHFPVSARALAVARPSPEEAPV 120
            ++++A                    L++   L AII CHFPVSARALA ARP+PEEAPV
Sbjct: 216 DFAALA-------------------VLRKS--LQAIITCHFPVSARALAAARPNPEEAPV 275

Query: 121 IITFPFLNVLFTSCGACLISETDAVWALTAP 151
             T PFL V   S GA  + +   V A ++P
Sbjct: 276 TTTLPFLKVFLPS-GATFV-KAGVVVATSSP 276

[Close]
BLAST of MELO3C035053.jh1 vs. NCBI nr
Match: GER53893.1 (trigger factor [Striga asiatica])

HSP 1 Score: 55.8 bits (133), Expect = 1.51e-06
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 91  KFLHAIIICHFPVSARALAVARPSPEEAPVIITFPFLNV 129
           K   A++ CH P+SARALAVARP P+EAPVIIT PF  V
Sbjct: 13  KSRQAMMTCHLPLSARALAVARPRPDEAPVIITVPFRKV 51

[Close]
BLAST of MELO3C035053.jh1 vs. ExPASy TrEMBL
Match: A0A6A5PF86 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034145 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.83e-13
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 0 

Query: 1   MVELFTPFKPLAKPLRSPKFAFGGTFPANQPREEKVTKVVSPSTKFKPFSGESWLLCSRQ 60
           M E+F+PFKP A PL+SP+ +      +N+    K  +   P+   KP S  ++ L    
Sbjct: 156 MDEVFSPFKPPANPLKSPRSS------SNRRERRKCPRWFVPTLSSKP-SAVNFSLAMPA 215

Query: 61  IYSSIANKHIKRHTRSTEAIHKLPYTLKRGKFLHAIIICHFPVSARALAVARPSPEEAPV 120
            ++++A                    L++   L AII CHFPVSARALA ARP+PEEAPV
Sbjct: 216 DFAALA-------------------VLRKS--LQAIITCHFPVSARALAAARPNPEEAPV 275

Query: 121 IITFPFLNVLFTSCGACLISETDAVWALTAP 151
             T PFL V   S GA  + +   V A ++P
Sbjct: 276 TTTLPFLKVFLPS-GATFV-KAGVVVATSSP 276

[Close]
BLAST of MELO3C035053.jh1 vs. ExPASy TrEMBL
Match: A0A7C8ZVV3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.72e-10
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 91  KFLHAIIICHFPVSARALAVARPSPEEAPVIITFPFLNVLFTS 133
           K  HA+I CH PVSARALA ARP PEEAPV +T PFL+V F S
Sbjct: 13  KSRHAMITCHLPVSARALAAARPKPEEAPVTMTLPFLSVFFCS 55

[Close]
BLAST of MELO3C035053.jh1 vs. ExPASy TrEMBL
Match: A0A7C9D475 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.56e-08
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 91  KFLHAIIICHFPVSARALAVARPSPEEAPVIITFPFLNVLFTSCGACLIS-ETDAVWAL 148
           K L A+I    P  ARALAVARPSP++APVI T PFL+V F+S  A LI  +   VWAL
Sbjct: 13  KSLQAMITSQSPCVARALAVARPSPDDAPVITTVPFLSVFFSSGVARLIDGDVVTVWAL 71

[Close]
BLAST of MELO3C035053.jh1 vs. ExPASy TrEMBL
Match: A0A5A7R849 (Trigger factor OS=Striga asiatica OX=4170 GN=STAS_31439 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.29e-07
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 91  KFLHAIIICHFPVSARALAVARPSPEEAPVIITFPFLNV 129
           K   A++ CH P+SARALAVARP P+EAPVIIT PF  V
Sbjct: 13  KSRQAMMTCHLPLSARALAVARPRPDEAPVIITVPFRKV 51

The following BLAST results are available for this feature:
BLAST of MELO3C035053.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF1896447.17.91e-1337.09hypothetical protein Lal_00034145 [Lupinus albus][more]
GER53893.11.51e-0666.67trigger factor [Striga asiatica][more]
BLAST of MELO3C035053.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035053.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5PF863.83e-1337.09Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034145 PE=4 SV=1[more]
A0A7C8ZVV37.72e-1069.77Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C9D4752.56e-0857.63Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A5A7R8497.29e-0766.67Trigger factor OS=Striga asiatica OX=4170 GN=STAS_31439 PE=4 SV=1[more]
BLAST of MELO3C035053.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035053.jh1.t1MELO3C035053.jh1.t1mRNA