Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGTTTACATACTTTGTAAAGGATCAACAAACACTTCTTGCCGTCTTAACTGTGTTCACGCTGGTCCAACGTCAGATGTTACTAACGTTGGAGCTACTAATGAACGACAGTAGGCGTATCACACATACACCGTCCGATACACACCATAGAATAAGGCAGCTTGCGTACTTTCGCAAGATACACGAGTCAAATCTTGTGTGTTGCCAAAGCACGCGCATGGACAGACAAACATTCACAATTCTATTTCATTTACTTCGGATTGTTTCTGGTCTTTCGTCGACCGAGATTGTTGATGTTGAGGAAATGGTAGCAACGTTCTTGCACGTCCTTGCCCACGATGTGAAGAATCGCATCATTCAAAGGGAATTTGTACGGTCCAGTGAGACAGTATCTCGATATTTTAACCTTATACTGTTGGCTGTCGTTCGAATATACGAGGAGTTTATAGAAAGACTTATTTCGAGAACAAACAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATGGTACAAGTTTAATGTATTTAAGCTTTAGGTGCGTGACACTTATTTCGACCTGTTTATTTCAGTCTATAGAATTGCTTTGGCGCCTTAGATGAGACGTACATAAAGGTGAACGTCCCCGCAGTAGATCGACCTACATTTACAACCTGTAAGGGGGAAATTGCCACAAATGTACTAGACGTCTGCGACACGAAAGGGGATTTCGTTTATGTCCTTGCCGGTTGGGAAGGATCCGTGGTAGACTCACAGATTCTACGTGATGCCCTTGCACGAGAAAATGGACTACGAGTGCCAAATGGTATTGTTTATTTATAATCAAACAACGCCCACTTCTACTTACATATTCAAAGTGCATAAATACATAGTTTTAATAACATGATATTATTATCTTTGCGGTGCAAGTTATCCAAACGCTGAGGAATTTCTCAGCCCATACAGAGGCCAACGGTACCACTTGCAAGAGTGGCATGGTGCTAGAAATGCACCAACAAATGCAAAGGAGTACTTCCACATGAAGCACTCTTCGGCAAGAAATGTCATTGAGTGCACCTTTGGTGTTCTTAAGGGTCGTTAGGTCATTCTTCGTGGAAAGTCGTACTATCCTTTGTAAGTCCAATGTCGCACCATACTAGCATGTTGCTTGCTTCACAATTTGATAAACAGAGAAATGACATTGTGACAAGGGGGACTCCACGTACACGATGACCACCGCTACAGAAGACATTCACTACATTGAAACGACAAAAGAATGGTCTTAGTGGTGCGACGAACTAGCTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAGATAAGAAAATTTTACATTAGAAGTCATCAGTTGTATACGTATTTTATTAACCTGTAGAATGTACTGTTGCATATGAAATGTACGGGTACCATTTGTTTGTGACTGTTAAATGTGAAATTATGATATTACTAACGTACTCCATATATTTCTTGTAATTTGTCATTCTCAGTATGTCAACCTCAACCCGTGCCCCGAGGCATGTCTGGACGAAGGAGGAGGAAGGCACTCTTGTGGAGTGCTTAATGGAGTTGGTGTCAATGGGGGATGGAAATCCGATAATGGTACGTTCCGGCCAGGTTACCTGGCCCAGTTGGTATGCATGATGGCGGAGAAACTACCTGGATGTCGTGTCCGTACAACGACTGTAATTGACTGTAGAATAAAGATACTGAAGCAGACATTCCAGGTCATCGCCGAAATGCGGGGGCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATAATTGCAGAGAAAGAATTATTTGATAATTGGATTAGGGTAAGGAAAATAATTAAACGGCACACGACATTCGTAATGTACATTTACTTTACAATTTTTCTATCAGTACTCATAAGTGATCCTTTTTTTCCCCGCAGTCGCATCCTACAGCGAAGGGACTCCTGAACAAATCATTTTCGTATTACGACGAGCTTACATATGTGTTCGGTCGTGATAAGGCGACGAGTCTGAGACATTCACCGACGTGGGGTCTAACGAGCCTGTCGGGTATGAAGGATTTGACATGACGGATGGAAACAAGGAGTTCCCACCCGTGTACAGCCAGGGGATTGACATGTCACAGGACGATGTATGTGCATCACGACCTTCTCACGCTTCAAAGGGTAGGACCTGA
mRNA sequence
GAAAGTTTACATACTTTGTAAAGGATCAACAAACACTTCTTGCCGTCTTAACTGTGTTCACGCTGGTCCAACGTCAGATGTTACTAACGTTGGAGCTACTAATGAACGACAGTAGGCGTATCACACATACACCGTCCGATACACACCATAGAATAAGGCAGCTTGCGTACTTTCGCAAGATACACGAGTCAAATCTTGTGTGTTGCCAAAGCACGCGCATGGACAGACAAACATTCACAATTCTATTTCATTTACTTCGGATTGTTTCTGGTCTTTCGTCGACCGAGATTGTTGATGTTGAGGAAATGGTAGCAACGTTCTTGCACGTCCTTGCCCACGATGTGAAGAATCGCATCATTCAAAGGGAATTTGTACGGTCCAGTGAGACAGTATCTCGATATTTTAACCTTATACTGTTGGCTGTCGTTCGAATATACGAGGAGTTTATAGAAAGACTTATTTCGAGAACAAACAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATGTATGTCAACCTCAACCCGTGCCCCGAGGCATGTCTGGACGAAGGAGGAGGAAGGCACTCTTGTGGAGTGCTTAATGGAGTTGGTGTCAATGGGGGATGGAAATCCGATAATGGTACGTTCCGGCCAGGTTACCTGGCCCAGTTGGTATGCATGATGGCGGAGAAACTACCTGGATGTCGTGTCCGTACAACGACTGTAATTGACTGTAGAATAAAGATACTGAAGCAGACATTCCAGGTCATCGCCGAAATGCGGGGGCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATAATTGCAGAGAAAGAATTATTTGATAATTGGATTAGGTCGCATCCTACAGCGAAGGGACTCCTGAACAAATCATTTTCGTATTACGACGAGCTTACATATGTGTTCGGTCGTGATAAGGCGACGAGTCTGAGACATTCACCGACGTGGGGTCTAACGAGCCTGTCGGGTATGAAGGATTTGACATGACGGATGGAAACAAGGAGTTCCCACCCGTGTACAGCCAGGGGATTGACATGTCACAGGACGATGTATGTGCATCACGACCTTCTCACGCTTCAAAGGGTAGGACCTGA
Coding sequence (CDS)
ATGTTACTAACGTTGGAGCTACTAATGAACGACAGTAGGCGTATCACACATACACCGTCCGATACACACCATAGAATAAGGCAGCTTGCGTACTTTCGCAAGATACACGAGTCAAATCTTGTGTGTTGCCAAAGCACGCGCATGGACAGACAAACATTCACAATTCTATTTCATTTACTTCGGATTGTTTCTGGTCTTTCGTCGACCGAGATTGTTGATGTTGAGGAAATGGTAGCAACGTTCTTGCACGTCCTTGCCCACGATGTGAAGAATCGCATCATTCAAAGGGAATTTGTACGGTCCAGTGAGACAGTATCTCGATATTTTAACCTTATACTGTTGGCTGTCGTTCGAATATACGAGGAGTTTATAGAAAGACTTATTTCGAGAACAAACAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATGTATGTCAACCTCAACCCGTGCCCCGAGGCATGTCTGGACGAAGGAGGAGGAAGGCACTCTTGTGGAGTGCTTAATGGAGTTGGTGTCAATGGGGGATGGAAATCCGATAATGGTACGTTCCGGCCAGGTTACCTGGCCCAGTTGGTATGCATGATGGCGGAGAAACTACCTGGATGTCGTGTCCGTACAACGACTGTAATTGACTGTAGAATAAAGATACTGAAGCAGACATTCCAGGTCATCGCCGAAATGCGGGGGCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATAATTGCAGAGAAAGAATTATTTGATAATTGGATTAGGTCGCATCCTACAGCGAAGGGACTCCTGAACAAATCATTTTCGTATTACGACGAGCTTACATATGTGTTCGGTCGTGATAAGGCGACGAGTCTGAGACATTCACCGACGTGGGGTCTAACGAGCCTGTCGGGTATGAAGGATTTGACATGA
Protein sequence
MLLTLELLMNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSSTEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLISRTNNCNDQRWKCFEVGMYVNLNPCPEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRSHPTAKGLLNKSFSYYDELTYVFGRDKATSLRHSPTWGLTSLSGMKDLT
Homology
BLAST of MELO3C035042 vs. NCBI nr
Match:
TYK04867.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 581.6 bits (1498), Expect = 3.9e-162
Identity = 297/386 (76.94%), Postives = 298/386 (77.20%), Query Frame = 0
Query: 9 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 68
MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS
Sbjct: 1 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60
Query: 69 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 128
TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI
Sbjct: 61 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120
Query: 129 SRTNNCNDQRWKCFE--------------------------------------------- 188
SRTNNCNDQRWKCFE
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180
Query: 189 -----------------------------------------VGMYVNLNPCPEACLDEGG 248
+ YVNLNPCPEACLDEGG
Sbjct: 181 YVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGG 240
Query: 249 GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ 308
GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ
Sbjct: 241 GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ 300
BLAST of MELO3C035042 vs. NCBI nr
Match:
KAA0062170.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 406.0 bits (1042), Expect = 2.9e-109
Identity = 204/276 (73.91%), Postives = 210/276 (76.09%), Query Frame = 0
Query: 75 EEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLISRTNNC 134
EEMVA FLHVLAHDVKNR+IQREFVRSSETVSR+FNLILLAVVRIYEEFI+RLIS TNNC
Sbjct: 3 EEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLILLAVVRIYEEFIKRLISITNNC 62
Query: 135 NDQRWKCF---------------------------------------------------- 194
NDQRWKCF
Sbjct: 63 NDQRWKCFENCFGALDETYIKVNVPAVDRPTFRTCKGKIATNVLDVCDTKGDFVYVLAGW 122
Query: 195 EVGMYVNLNPCPEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKL 254
E +YVNLNPCPE CLDEGGG HSCGVLNGVGVNGGWK DNGTFRPGYLAQLV MMAEKL
Sbjct: 123 EGSVYVNLNPCPETCLDEGGGGHSCGVLNGVGVNGGWKFDNGTFRPGYLAQLVRMMAEKL 182
Query: 255 PGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRSHP 299
PGCRVRTTTVIDCRIKILK+TFQ IAEMRGPACSGFGWNDEEKCIIAEKELFDNWIR HP
Sbjct: 183 PGCRVRTTTVIDCRIKILKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRLHP 242
BLAST of MELO3C035042 vs. NCBI nr
Match:
KAA0051365.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 357.8 bits (917), Expect = 9.1e-95
Identity = 210/423 (49.65%), Postives = 229/423 (54.14%), Query Frame = 0
Query: 1 MLLTLELLMNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLL 60
MLLTLELLMNDSRRITHT DT HRI QLAYF IHES+LVC QSTRMDR+TF IL HLL
Sbjct: 20 MLLTLELLMNDSRRITHTSFDTRHRISQLAYFCVIHESDLVCRQSTRMDRRTFAILCHLL 79
Query: 61 RIVSGLSSTEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIY 120
+SGL S EIVDVE+MVATFLH+LAHD
Sbjct: 80 WTISGLLSIEIVDVEQMVATFLHILAHD-------------------------------- 139
Query: 121 EEFIERLISRTNNCNDQRWKCFE------------------------------------- 180
E I+R + TNNCNDQRWKCFE
Sbjct: 140 -ELIKRPVPVTNNCNDQRWKCFENCLGALDGTYINVNVSAADRPTFRTHKREIATNVLGL 199
Query: 181 ------------------------------------------------------------ 240
Sbjct: 200 CNMKGDFVYVLAGWKGFAVDSRILRDALARDNGLQVPKGYYYLCDAGYPNVEGFLDPYRG 259
Query: 241 ---------VG--------MYVNLNPCPEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTF 300
VG YVNLNPCPEACLDEGGG HSC V NGVGVNGGWKSDN TF
Sbjct: 260 QREMAYCDDVGDVDKGDSAYYVNLNPCPEACLDEGGGGHSCRVFNGVGVNGGWKSDNCTF 319
Query: 301 RPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACSGFGWNDEEKC 309
RPGYLAQLV MM EKLPGCRVR TTVIDCRI+ LK+TFQ I+EM GPACSGFGWNDEEKC
Sbjct: 320 RPGYLAQLVRMMVEKLPGCRVRATTVIDCRIETLKRTFQAISEMWGPACSGFGWNDEEKC 379
BLAST of MELO3C035042 vs. NCBI nr
Match:
TYK23855.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 352.1 bits (902), Expect = 5.0e-93
Identity = 191/339 (56.34%), Postives = 214/339 (63.13%), Query Frame = 0
Query: 9 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 68
MNDSRRITHT DT HRI QLAYF IHES+LVC QSTRMDR+TF IL HLL +SGL S
Sbjct: 1 MNDSRRITHTSFDTRHRISQLAYFCVIHESDLVCRQSTRMDRRTFAILCHLLWTISGLLS 60
Query: 69 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVR---------SSETVSRYFNLILLAVVRI 128
EIVDVE+MVATFLH+LAHD + ++ + T R +L + +
Sbjct: 61 IEIVDVEQMVATFLHILAHDNCLGALDGTYINVNVSAADRPTFRTHKREIATNVLGLCNM 120
Query: 129 YEEFIERLISRTNNCNDQR----------------------------------------- 188
+F+ L + D R
Sbjct: 121 KGDFVYVLAGWKGSAVDSRILRDALARENGLQVPKGYYYLCDAGYPNIEGFLDPYRGQRE 180
Query: 189 -WKCFEVG--------MYVNLNPCPEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTFRPG 248
C +VG YVNLNPCPEACLD GGG HSCGV NGVGVNGGWKSDN TFRPG
Sbjct: 181 MAYCDDVGDVDKGDSAYYVNLNPCPEACLDGGGGGHSCGVFNGVGVNGGWKSDNCTFRPG 240
Query: 249 YLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACSGFGWNDEEKCIIA 289
YLAQLV MM EKLPGCRVR TTVIDCRIK LK+TFQ I+EM GPACSGFGWNDEEKCIIA
Sbjct: 241 YLAQLVRMMVEKLPGCRVRATTVIDCRIKTLKRTFQAISEMWGPACSGFGWNDEEKCIIA 300
BLAST of MELO3C035042 vs. NCBI nr
Match:
TYK05796.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 349.7 bits (896), Expect = 2.5e-92
Identity = 185/310 (59.68%), Postives = 200/310 (64.52%), Query Frame = 0
Query: 9 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 68
MND+RRIT+TPSDT RIRQLAYFR IHES+LVC QSTRMDR+TF IL HLL+ VSGLSS
Sbjct: 1 MNDNRRITYTPSDTLRRIRQLAYFRMIHESDLVCRQSTRMDRRTFAILCHLLQTVSGLSS 60
Query: 69 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 128
TEIVDVEEMVA FLHVLAHD+KN +IQREFVRS ETVSR+FNL+LL VVR+YEE I+R +
Sbjct: 61 TEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSRHFNLVLLTVVRLYEELIKRPV 120
Query: 129 SRTNNCNDQRWKCFE------------------------------VGMYVNLNPCPEACL 188
TNNC DQRW+CFE YVNL P PE CL
Sbjct: 121 PVTNNCKDQRWQCFENCLGALDGTYIKVNVPATDRPTFRTRKGEIATNYVNLKPYPETCL 180
Query: 189 DEGGGRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIK 248
DEGGG HSCGV N VGVNGG
Sbjct: 181 DEGGGGHSCGVFNEVGVNGG---------------------------------------- 240
Query: 249 ILKQTFQVIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRSHPTAKGLLNKSFSYYDEL 289
I EM GPACSGFGWNDEEKCII EKELFDNW+RSHP KGLLNK F YYDEL
Sbjct: 241 --GNWIMAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDEL 268
BLAST of MELO3C035042 vs. ExPASy TrEMBL
Match:
A0A5D3BZA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00580 PE=4 SV=1)
HSP 1 Score: 581.6 bits (1498), Expect = 1.9e-162
Identity = 297/386 (76.94%), Postives = 298/386 (77.20%), Query Frame = 0
Query: 9 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 68
MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS
Sbjct: 1 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60
Query: 69 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 128
TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI
Sbjct: 61 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120
Query: 129 SRTNNCNDQRWKCFE--------------------------------------------- 188
SRTNNCNDQRWKCFE
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180
Query: 189 -----------------------------------------VGMYVNLNPCPEACLDEGG 248
+ YVNLNPCPEACLDEGG
Sbjct: 181 YVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGG 240
Query: 249 GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ 308
GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ
Sbjct: 241 GRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQ 300
BLAST of MELO3C035042 vs. ExPASy TrEMBL
Match:
A0A5A7V4E7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005480 PE=4 SV=1)
HSP 1 Score: 406.0 bits (1042), Expect = 1.4e-109
Identity = 204/276 (73.91%), Postives = 210/276 (76.09%), Query Frame = 0
Query: 75 EEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLISRTNNC 134
EEMVA FLHVLAHDVKNR+IQREFVRSSETVSR+FNLILLAVVRIYEEFI+RLIS TNNC
Sbjct: 3 EEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLILLAVVRIYEEFIKRLISITNNC 62
Query: 135 NDQRWKCF---------------------------------------------------- 194
NDQRWKCF
Sbjct: 63 NDQRWKCFENCFGALDETYIKVNVPAVDRPTFRTCKGKIATNVLDVCDTKGDFVYVLAGW 122
Query: 195 EVGMYVNLNPCPEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKL 254
E +YVNLNPCPE CLDEGGG HSCGVLNGVGVNGGWK DNGTFRPGYLAQLV MMAEKL
Sbjct: 123 EGSVYVNLNPCPETCLDEGGGGHSCGVLNGVGVNGGWKFDNGTFRPGYLAQLVRMMAEKL 182
Query: 255 PGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRSHP 299
PGCRVRTTTVIDCRIKILK+TFQ IAEMRGPACSGFGWNDEEKCIIAEKELFDNWIR HP
Sbjct: 183 PGCRVRTTTVIDCRIKILKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRLHP 242
BLAST of MELO3C035042 vs. ExPASy TrEMBL
Match:
A0A5A7UCJ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00900 PE=3 SV=1)
HSP 1 Score: 357.8 bits (917), Expect = 4.4e-95
Identity = 210/423 (49.65%), Postives = 229/423 (54.14%), Query Frame = 0
Query: 1 MLLTLELLMNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLL 60
MLLTLELLMNDSRRITHT DT HRI QLAYF IHES+LVC QSTRMDR+TF IL HLL
Sbjct: 20 MLLTLELLMNDSRRITHTSFDTRHRISQLAYFCVIHESDLVCRQSTRMDRRTFAILCHLL 79
Query: 61 RIVSGLSSTEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIY 120
+SGL S EIVDVE+MVATFLH+LAHD
Sbjct: 80 WTISGLLSIEIVDVEQMVATFLHILAHD-------------------------------- 139
Query: 121 EEFIERLISRTNNCNDQRWKCFE------------------------------------- 180
E I+R + TNNCNDQRWKCFE
Sbjct: 140 -ELIKRPVPVTNNCNDQRWKCFENCLGALDGTYINVNVSAADRPTFRTHKREIATNVLGL 199
Query: 181 ------------------------------------------------------------ 240
Sbjct: 200 CNMKGDFVYVLAGWKGFAVDSRILRDALARDNGLQVPKGYYYLCDAGYPNVEGFLDPYRG 259
Query: 241 ---------VG--------MYVNLNPCPEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTF 300
VG YVNLNPCPEACLDEGGG HSC V NGVGVNGGWKSDN TF
Sbjct: 260 QREMAYCDDVGDVDKGDSAYYVNLNPCPEACLDEGGGGHSCRVFNGVGVNGGWKSDNCTF 319
Query: 301 RPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACSGFGWNDEEKC 309
RPGYLAQLV MM EKLPGCRVR TTVIDCRI+ LK+TFQ I+EM GPACSGFGWNDEEKC
Sbjct: 320 RPGYLAQLVRMMVEKLPGCRVRATTVIDCRIETLKRTFQAISEMWGPACSGFGWNDEEKC 379
BLAST of MELO3C035042 vs. ExPASy TrEMBL
Match:
A0A5D3DJT6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00250 PE=3 SV=1)
HSP 1 Score: 352.1 bits (902), Expect = 2.4e-93
Identity = 191/339 (56.34%), Postives = 214/339 (63.13%), Query Frame = 0
Query: 9 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 68
MNDSRRITHT DT HRI QLAYF IHES+LVC QSTRMDR+TF IL HLL +SGL S
Sbjct: 1 MNDSRRITHTSFDTRHRISQLAYFCVIHESDLVCRQSTRMDRRTFAILCHLLWTISGLLS 60
Query: 69 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVR---------SSETVSRYFNLILLAVVRI 128
EIVDVE+MVATFLH+LAHD + ++ + T R +L + +
Sbjct: 61 IEIVDVEQMVATFLHILAHDNCLGALDGTYINVNVSAADRPTFRTHKREIATNVLGLCNM 120
Query: 129 YEEFIERLISRTNNCNDQR----------------------------------------- 188
+F+ L + D R
Sbjct: 121 KGDFVYVLAGWKGSAVDSRILRDALARENGLQVPKGYYYLCDAGYPNIEGFLDPYRGQRE 180
Query: 189 -WKCFEVG--------MYVNLNPCPEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTFRPG 248
C +VG YVNLNPCPEACLD GGG HSCGV NGVGVNGGWKSDN TFRPG
Sbjct: 181 MAYCDDVGDVDKGDSAYYVNLNPCPEACLDGGGGGHSCGVFNGVGVNGGWKSDNCTFRPG 240
Query: 249 YLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACSGFGWNDEEKCIIA 289
YLAQLV MM EKLPGCRVR TTVIDCRIK LK+TFQ I+EM GPACSGFGWNDEEKCIIA
Sbjct: 241 YLAQLVRMMVEKLPGCRVRATTVIDCRIKTLKRTFQAISEMWGPACSGFGWNDEEKCIIA 300
BLAST of MELO3C035042 vs. ExPASy TrEMBL
Match:
A0A5D3C620 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003010 PE=4 SV=1)
HSP 1 Score: 349.7 bits (896), Expect = 1.2e-92
Identity = 185/310 (59.68%), Postives = 200/310 (64.52%), Query Frame = 0
Query: 9 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 68
MND+RRIT+TPSDT RIRQLAYFR IHES+LVC QSTRMDR+TF IL HLL+ VSGLSS
Sbjct: 1 MNDNRRITYTPSDTLRRIRQLAYFRMIHESDLVCRQSTRMDRRTFAILCHLLQTVSGLSS 60
Query: 69 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 128
TEIVDVEEMVA FLHVLAHD+KN +IQREFVRS ETVSR+FNL+LL VVR+YEE I+R +
Sbjct: 61 TEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSRHFNLVLLTVVRLYEELIKRPV 120
Query: 129 SRTNNCNDQRWKCFE------------------------------VGMYVNLNPCPEACL 188
TNNC DQRW+CFE YVNL P PE CL
Sbjct: 121 PVTNNCKDQRWQCFENCLGALDGTYIKVNVPATDRPTFRTRKGEIATNYVNLKPYPETCL 180
Query: 189 DEGGGRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIK 248
DEGGG HSCGV N VGVNGG
Sbjct: 181 DEGGGGHSCGVFNEVGVNGG---------------------------------------- 240
Query: 249 ILKQTFQVIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRSHPTAKGLLNKSFSYYDEL 289
I EM GPACSGFGWNDEEKCII EKELFDNW+RSHP KGLLNK F YYDEL
Sbjct: 241 --GNWIMAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDEL 268
BLAST of MELO3C035042 vs. TAIR 10
Match:
AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 59.7 bits (143), Expect = 4.8e-09
Identity = 31/94 (32.98%), Postives = 55/94 (58.51%), Query Frame = 0
Query: 32 FRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSSTEIVDVEEMVATFLHVLAHDVKN 91
++ ++ N C ++ RMD+ F L LL+ L T + +E +A FL ++ H+++
Sbjct: 32 YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91
Query: 92 RIIQREFVRSSETVSRYFNLILLAVVRIYEEFIE 126
R +Q F S ET+SR+FN +L AV+ I ++F +
Sbjct: 92 RAVQELFCYSGETISRHFNNVLNAVIAISKDFFQ 125
BLAST of MELO3C035042 vs. TAIR 10
Match:
AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 46.6 bits (109), Expect = 4.2e-05
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 0
Query: 38 SNLVCCQS-TRMDRQTFTILFHLLRIVSGLSSTEIVDVEEMVATFLHVLAHDVKNRIIQR 97
SN V CQ+ RM + FT L +L GL S+ + ++E VA FL + A + R I
Sbjct: 19 SNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIAL 78
Query: 98 EFVRSSETVSRYFNLILLAVVRIYEEFI 125
F + ET+ R F+ +L A+ R+ E+I
Sbjct: 79 RFGHAQETIWRKFHDVLKAMERLAVEYI 106
BLAST of MELO3C035042 vs. TAIR 10
Match:
AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 43.5 bits (101), Expect = 3.6e-04
Identity = 14/50 (28.00%), Postives = 31/50 (62.00%), Query Frame = 0
Query: 236 SGFGWNDEEKCIIAEKELFDNWIRSHPTAKGLLNKSFSYYDELTYVFGRD 286
+GF W+ +IA+ ++++ +I++HP A+ K+ Y L ++FG++
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKE 448
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| TYK04867.1 | 3.9e-162 | 76.94 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0062170.1 | 2.9e-109 | 73.91 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0051365.1 | 9.1e-95 | 49.65 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK23855.1 | 5.0e-93 | 56.34 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK05796.1 | 2.5e-92 | 59.68 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BZA2 | 1.9e-162 | 76.94 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7V4E7 | 1.4e-109 | 73.91 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UCJ1 | 4.4e-95 | 49.65 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3DJT6 | 2.4e-93 | 56.34 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3C620 | 1.2e-92 | 59.68 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G41980.1 | 4.8e-09 | 32.98 | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... | [more] |
| AT5G28730.1 | 4.2e-05 | 36.36 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
| AT2G24960.2 | 3.6e-04 | 28.00 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
