MELO3C035038 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035038
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase I subunit RPA1-like
Location	chr11: 16861712 .. 16864394 (+)
RNA-Seq Expression	MELO3C035038
Synteny	MELO3C035038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGAAGGCCATATGGACGCGTCCGTTTTTCTTTCGCTTCCGCTATGTATTTTGTCAGAATATTTTGATTATGATTTTTGGACTGGTGACTTGACATTTTATTTTGTGATTTTCTTTTTGAATTATTTAAAATAGGGCCCGAAACTGTCTTTTGTGAGGTTTATACTGTCTTAATGAATCGTATCTGGTCCGTTTTAAATTTTATATTGAATGGTCGAGTTTTGGTATTTGGTAGTGACCTCAGCTTAGTCCGGAAAAGTTGGGTCGTTACAGGAAGGGTCAAAAAAAGGCTAAGGAAACTATTCTATCAAAGGTAACTTTTTTTTTTTTTTTTAAATTTCCTCTCTTTCTCTTCCCTTTTGAGGATAAAAAAAAATCTAAGAAAAACTATTATGTCAAATTGGTCCTCAAAGTAACTTTTTTTTTAAAAAAAAAAATTTCGTCAATTTCCTTTCCCTTTTGAGAGTGTGATCAATTATAACGATGTAGTTTTTCAAATTTGTTTTTGTTGTAATTTCGTTAATTAATTTTGAGGTGACTTTAATTTTGTTAGGGTTAGGCAAATTGGGTTTACTGTGCTTTTAATTGTTTTCTTTTATTGTTACTTTAAATTTAGACAAATTTGGCTTTTATTGTTACTTCAAATTTAGGCAAATTGGGTTTACTGTGCTTTTAATTGTTTGCTTTTATTGTTACTTCAAATTTAGGTCAATTGAATTTATTCTTGTTTATGTCAATTAAATTTATTGTTGCATCAAATTTAGTAGATTTAGGCCAATTAATTTCAATGTGTTTCGAATTTGTTAGATTTAGGTCATTTGAGCTTTTAATTTTGTTAGGTTTAGGGCAATTGAATTTATTACTTCAAATTTAGCAGATTTAGGCCCATTGATTCAAATTTGTTAGATTTAGGCCATTTTATTTTATATTCTTTAAATTTGTTATGTTTAAGGCAGATTTAATTTGTCAACCTATATTTGTCATATTTCACATTGTTTTACTATTATTATTGTTGTTGTTGTTGTTGTTGTTATTTATTTTTCAATTTCTATAATTGCAAAATGTATTAAAAAAATCATTTGTTTTTTGCCATATGGATATAAAAATTTGAGACGGAAAAGAATAATGTTCATTTATGGATTTTATGGATTTTACATTTTTCAATTAGTAAAAAAAAAATCATTTTTCCTCACTTAGATGACTTTTTTTTGCTTTTTCGAATTTCTGTCAATCTATGAAGTATCATGCTATGTAAGTTTCATTATCATCTAATTTTAACATTTACGAATAATGATAGACTAAATTAAAAACTATAAGAGGATAAGATACAAAACTAGGACTTCTCAATTTAAGTCATTAAAGATTTGCTTATGTGTTGAATGTCAATGATGATGTTTTCTTGTTTGATGGTTCCTATGAAAAAACAAGGATTATTTAGATCAATATATTGTCTACTCAATTTTTTTGGTTGAATTTGATAGAAGAGGAACTACAAGAGATCTTTGATAACAACACTTTCCAATCCTCATGGTAAGAAAGTTTTGAAACTTACTTATTTTGCAACTAGATTTTATATATTATTTGGATTTTTGGAGTATGTAAAATTTTAATGTGTTTGTTATTTGTTACATTGTTTGTATTTTCTCATAACATTGGTTGCAATTTTTGTTCTTGGATTAACTTTGAGAATGATGTTAACTTAATTTATCATGAACTCCGTTAGGAATCAAATAATGAGTTAATATATTGCATATGAAACAATAATTGTATAACTTACATAGTTTGCTATTCATTATTAGGGCTTCCGAACTTGTAAGAAAGAAGAAGCCTCTGTGGAGGGTAATCAAGGTATGGGGGTGGAGATTTAGTAAAAGAAAGAGGTAAGCGTGCTTTATGTTTTATAACGTAACTTAACTATTTTATTTTAGGAATCATGTTAACATGTATTTAGGAACGTTGCTTTGACTATCCTATAGTGGTAGCCATTGAAAATCTATTTTGTGCGATCTGCTTAGACATATGTTTTAGGAATCACTTTGACAGGTACTTAGGAACTTGATACTTTGTTGTGTTAACTATTCTGCAGTTATGATAGTCATTGAAAAGCTATTTTGTTCGATCCGCTTAGACATATGTTATAGGAATCATGTTGTTTTGCATTTACTTTGGGAGGAGGGGGGCTAAAGGTAAGCTTATGCTAAGTTTCAATTTGATGCAAACTAGAACATTGCTTGGTCTGTAAAGATTGAATCGAAACTTACATTTGCAACATTTATATACTATGCTTATGTCTATGCTTATGTAGTCGGTGTTTTCTTTTTAATCTTTTCCATTCCTTATGGGTCTTTTATTAAAAACCTTGGTTGTATGAACTTTGGACGCTTATTTTGAAAAGTTTATTGGTCTCCTTATTAAGAAGGTGATTTTTGTTTGGCATGTACTTAATGTTTATGCTTATGCTTATGCTTATGCATTTTCCATAATGAATGTTGGCTAAGGTTCATTTTCTTCAAATTTGCAGGTAGTTGAAGAATCTATGGACCATGGTATCGATCAAGTTCTCATTTATGCGTCAGTTTGATTAGATTAGGTCACACATACATGTAATATTACCGTAAATTTATCTTTTGGATTATTGTAAAATATTTACCGATAATGTAAGTTATATTTATCAATATAA

mRNA sequence

ATGCGTGAAGGCCATATGGACGCGTCCGTTTTTCTTTCGCTTCCGCTATGTATTTTGTCAGAATATTTTGATTATGATTTTTGGACTGGGCCCGAAACTGTCTTTTGTGAGCTTAGTCCGGAAAAGTTGGGTCGTTACAGGAAGGGTCAAAAAAAGGCTAAGGAAACTATTCTATCAAAGAAGAGGAACTACAAGAGATCTTTGATAACAACACTTTCCAATCCTCATGGTAAGAAAGTTTTGAAACTTACTTATTTTGCAACTAGATTTTATATATTATTTGGATTTTTGGAGTATGGCTTCCGAACTTGTAAGAAAGAAGAAGCCTCTGTGGAGGGTAATCAAGTTATGATAGTCATTGAAAAGCTATTTTGTTCGATCCGCTTAGACATATGTTATAGGAATCATGTAGTTGAAGAATCTATGGACCATGGTATCGATCAAGTTCTCATTTATGCGTCAGTTTGATTAGATTAGGTCACACATACATGTAATATTACCGTAAATTTATCTTTTGGATTATTGTAAAATATTTACCGATAATGTAAGTTATATTTATCAATATAA

Coding sequence (CDS)

ATGCGTGAAGGCCATATGGACGCGTCCGTTTTTCTTTCGCTTCCGCTATGTATTTTGTCAGAATATTTTGATTATGATTTTTGGACTGGGCCCGAAACTGTCTTTTGTGAGCTTAGTCCGGAAAAGTTGGGTCGTTACAGGAAGGGTCAAAAAAAGGCTAAGGAAACTATTCTATCAAAGAAGAGGAACTACAAGAGATCTTTGATAACAACACTTTCCAATCCTCATGGTAAGAAAGTTTTGAAACTTACTTATTTTGCAACTAGATTTTATATATTATTTGGATTTTTGGAGTATGGCTTCCGAACTTGTAAGAAAGAAGAAGCCTCTGTGGAGGGTAATCAAGTTATGATAGTCATTGAAAAGCTATTTTGTTCGATCCGCTTAGACATATGTTATAGGAATCATGTAGTTGAAGAATCTATGGACCATGGTATCGATCAAGTTCTCATTTATGCGTCAGTTTGA

Protein sequence

MREGHMDASVFLSLPLCILSEYFDYDFWTGPETVFCELSPEKLGRYRKGQKKAKETILSKKRNYKRSLITTLSNPHGKKVLKLTYFATRFYILFGFLEYGFRTCKKEEASVEGNQVMIVIEKLFCSIRLDICYRNHVVEESMDHGIDQVLIYASV

Homology

[Close]

BLAST of MELO3C035038 vs. NCBI nr
Match: KAA0051776.1 (hypothetical protein E6C27_scaffold60G001800 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-05
Identity = 34/51 (66.67%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDF--WTGPETVF---CELSPEKLGRY 47
           MREGHMDAS FLSLPLCILSEYFD DF    G   VF     L  +KLGRY
Sbjct: 105 MREGHMDASDFLSLPLCILSEYFDCDFGLLNGRVLVFGSDLSLVRKKLGRY 155

[Close]

BLAST of MELO3C035038 vs. NCBI nr
Match: TYK21461.1 (NAC-alpha domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-05
Identity = 34/51 (66.67%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDF--WTGPETVF---CELSPEKLGRY 47
           MREGHMDAS FLSLPLCILSEYFD DF    G   VF     L  +KLGRY
Sbjct: 115 MREGHMDASDFLSLPLCILSEYFDCDFGLLNGRVLVFGSDLSLVRKKLGRY 165

[Close]

BLAST of MELO3C035038 vs. NCBI nr
Match: KAA0058399.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 4.9e-04
Identity = 30/46 (65.22%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDFWTGPETVFCELSPEKLGRY 47
           MREGHMDAS F SLPL           W  PETVFC+LSPEKLGRY
Sbjct: 184 MREGHMDASDFPSLPL-----------W--PETVFCKLSPEKLGRY 216

[Close]

BLAST of MELO3C035038 vs. NCBI nr
Match: KAA0038877.1 (hypothetical protein E6C27_scaffold1170G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-04
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDF 28
           MREGHMDAS FLSLPLCILSEYFD DF
Sbjct: 177 MREGHMDASDFLSLPLCILSEYFDCDF 203

[Close]

BLAST of MELO3C035038 vs. NCBI nr
Match: KAA0051684.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-04
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDF 28
           MREGHMDAS FLSLPLCILSEYFD DF
Sbjct: 809 MREGHMDASDFLSLPLCILSEYFDCDF 835

[Close]

BLAST of MELO3C035038 vs. ExPASy TrEMBL
Match: A0A5A7UC25 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001800 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 34/51 (66.67%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDF--WTGPETVF---CELSPEKLGRY 47
           MREGHMDAS FLSLPLCILSEYFD DF    G   VF     L  +KLGRY
Sbjct: 105 MREGHMDASDFLSLPLCILSEYFDCDFGLLNGRVLVFGSDLSLVRKKLGRY 155

[Close]

BLAST of MELO3C035038 vs. ExPASy TrEMBL
Match: A0A5D3DCR4 (NAC-alpha domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001370 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 34/51 (66.67%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDF--WTGPETVF---CELSPEKLGRY 47
           MREGHMDAS FLSLPLCILSEYFD DF    G   VF     L  +KLGRY
Sbjct: 115 MREGHMDASDFLSLPLCILSEYFDCDFGLLNGRVLVFGSDLSLVRKKLGRY 165

[Close]

BLAST of MELO3C035038 vs. ExPASy TrEMBL
Match: A0A5A7UY04 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-04
Identity = 30/46 (65.22%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDFWTGPETVFCELSPEKLGRY 47
           MREGHMDAS F SLPL           W  PETVFC+LSPEKLGRY
Sbjct: 184 MREGHMDASDFPSLPL-----------W--PETVFCKLSPEKLGRY 216

[Close]

BLAST of MELO3C035038 vs. ExPASy TrEMBL
Match: A0A5A7U8N3 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00630 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-04
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDF 28
           MREGHMDAS FLSLPLCILSEYFD DF
Sbjct: 809 MREGHMDASDFLSLPLCILSEYFDCDF 835

[Close]

BLAST of MELO3C035038 vs. ExPASy TrEMBL
Match: A0A5A7TBB4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00360 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-04
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   MREGHMDASVFLSLPLCILSEYFDYDF 28
           MREGHMDAS FLSLPLCILSEYFD DF
Sbjct: 177 MREGHMDASDFLSLPLCILSEYFDCDF 203

The following BLAST results are available for this feature:

BLAST of MELO3C035038 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035038 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051776.1	2.6e-05	66.67	hypothetical protein E6C27_scaffold60G001800 [Cucumis melo var. makuwa]	[more]
TYK21461.1	2.6e-05	66.67	NAC-alpha domain-containing protein 1 [Cucumis melo var. makuwa]	[more]
KAA0058399.1	4.9e-04	65.22	pol protein [Cucumis melo var. makuwa]	[more]
KAA0038877.1	6.4e-04	92.59	hypothetical protein E6C27_scaffold1170G00360 [Cucumis melo var. makuwa]	[more]
KAA0051684.1	6.4e-04	92.59	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC25	1.3e-05	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCR4	1.3e-05	66.67	NAC-alpha domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7UY04	2.4e-04	65.22	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40...	[more]
A0A5A7U8N3	3.1e-04	92.59	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7TBB4	3.1e-04	92.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C035038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035038.1	MELO3C035038.1	mRNA