MELO3C034995 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034995
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	proteasome-associated protein ECM29 homolog isoform X1
Location	chr11: 13659448 .. 13661783 (+)
RNA-Seq Expression	MELO3C034995
Synteny	MELO3C034995

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAATGTCATTCTAAACTCATAGTTTTGGAGCTTTCTCAGGGTGGCAGGAGGGTTCTTGAGCAAACTTCTAGTGCTGCATCACCTAACACATGCTATAGATGTGGTGAACAAGGGCATTTTGCTCGGGGGTGTGCAGGTTCCACCAAGGTAGATAAAATAGCTTACATATTTTTTTGTTTTATTAGGAAAAAAGAAAATTTTCATTTTGTTATGAATTTATATCTCTTGTTGAAATGTTTTTTTTTGCTGTGAGAGGGAAAAGAAACCCTCTTGGATGCACTTGGTGCTATTTCAACTGCTTGCCACAAATTAATTTCTACTGTAGATCTTGCCATGCCCAATGCCATTGTAAATCTGGTATCTTCCTCTTGCTCCAAGAAAGCAAAGAAATTTCGAAGCAATAGATGCAAGGGGATAGACTTTAGTTTTGGTATACAACACATGTTTTTGGTTATATAACATAGCTATTATTGTTGATTTTGGAATAGGCCACACACAGGAACTTTTAGTTGGTTATATTTGGATTGGAATTCTGTAATTGTAGATGACATTGTTGAGAAGAATGAAATTATTGTTGGTTTACTGGTTTATTTGTCATTTTATTGTTGTGTAACTACTGGTTGGAAAGGAATGTACTTAATGCAGGACACAGAAAATAGAAAATTTGTATATTTAATATATTAATAAACAATATACATAACGTTAAATATATGACGAATTTTTTGTGTCAACTATACAATTTTACTTGACGTGCAAATAGTGTCAAGTATGCGAACTTACTTGAATCAAATATAATATTTTACTTGATGGTTTTTTAGTATCAAATATACAATTTTACTTGACATGTAAATAGTGTCAAGTATGCGATCTTGACGGTAGATTACTTGATGTCAATAAAATGTCAAGTAAAGGTATATTCGACGATTTATTAGTGTCAAGTAAGGGTATACTTGACGTGTTTTGAATGTCAAGTAAAGGTATACTTGACGGTTTTTCAGTGTCAAGTAATTTGACTATACTTGATAGTCGATTACTTGACGCTTTTAAAAACGTCAAGTAAAGGTTTACTTAACATTGTATTAACGTCAAGTAATCCAATTTCTGTAATAGTGATGTATAATATGAAACTCATACATTATAATGAAAATAAGAAAATGGAAAGTAAGAGATATAAGCCGAGTCGTAGAATGCCTAAGCATCCCTTGGCTCTTTAACAAGTTATGAGGAAGAAGATTGTGGTTTCTCTCTCTAATCTTATTCTGAGCTCTCACTTACAAGATTAACTAGAGAAGAGATGGAATATTCTTTACATAAGGCAGAAAAGTTAGTCCTTTCCACTGGCTTCGATCGAGCTCTCTAGGTCTTGGTCCATTCAGACCCTCTTTTCTTGGTAAAGATGGAGACTTTATATAGGCTACTTTAGGCAGAAAACTTATATTCCTCTGCACACGTCAATGCCAAACGCAGCATTGTCAAGTCACATCAACTCAACTACCATTTTTGTCTTCTAGTGAATCTCTTTGCGTGATGATGTGAAATCTTGCCTAGTGATGTTAATCGCCAAGCAATCTTCCAATCGCATAAGCTTTTGCATGCATCCTTCATTTTGCAATTCACTATATCTTTTTTCTTAATTATCCTGCAATAAAAACAATGAATGACATGGAAAATAAGGCATGAAGATTTATGTAAGTTATGTTCCCTTATCTTTATAAATTTACGATGAAAGCTACGTGTTTTCAGACTTTATCCTACGTTATGACTCCATTGTTCTACCTAAAAGGTTATAATATCATGTATTTCTACAAGCTATTAGTCCCTGGTAGGGACAAAGGAAAGGATGTCGAGAATACAAACCTCCAAGAAGAAAAAGGAGGGAATGAAACAACATGAACTCGCAACATTAGGTGAACAACTAGAGAAATTGTCAGCCAAATTTAAGGCTATAGAAGAGCAAGAGGTGGACCACCTCGAGGTCGTGGCAACAGAGCTTAAGGAAGAGCTAAATCAAATAAGCCCTTTTGGAACTAAGGTTATCACCTGAAAACCAGAGCTTAAGCGCTGCCACACCATAGAAAAGGAAGACAAAAGTTGGACCATCTAAATCTGAGGAGGCCTAACAAGGCGGTCGGGGGTTATTCCTCTATAATGAAGTTCTTCCTAACTTTATCTACAGACTAATTAAGGCATTTCGGTGGAGTAAGTTTTTCCTACAAGAAACAACAGTCAGATTGGATGTGGTAAACAAAGTTTACGCTGCAAAGTACTATCCAATTGACTTCTATGTGATGGTTGAAGGGCAAAGGATTTATTTCAATGTTAAGGCGTAA

mRNA sequence

ATGTCAAAATGTCATTCTAAACTCATAGTTTTGGAGCTTTCTCAGGGTGGCAGGAGGGTTCTTGAGCAAACTTCTAGTGCTGCATCACCTAACACATGCTATAGATGTGGTGAACAAGGGCATTTTGCTCGGGGGTGTGCAGGTTCCACCAAGGGAAAAGAAACCCTCTTGGATGCACTTGGTGCTATTTCAACTGCTTGCCACAAATTAATTTCTACTGTAGATCTTGCCATGCCCAATGCCATTGTAAATCTGGTATCTTCCTCTTGCTCCAAGAAAGCAAAGAAATTTCGAAGCAATAGATGCAAGGGGATAGACTTTAGTTTTGGTATACAACACATGCCACACACAGGAACTTTTAGTTGGTTATATTTGGATTGGAATTCTGTAATTGTAGATGACATTGTTGAGAAGAATGAAATTATTGTTGGTTTACTGTGTCAAGTATGCGATCTTGACGGTAGATTACTTGATGTCAATAAAATGTCAAGTAAAGGGACAAAGGAAAGGATGTCGAGAATACAAACCTCCAAGAAGAAAAAGGAGGGAATGAAACAACATGAACTCGCAACATTAGGTGAACAACTAGAGAAATTGTCAGCCAAATTTAAGGCTATAGAAGAGCAAGAGGTGGACCACCTCGAGGTCGTGGCAACAGAGCTTAAGGAAGAGCTAAATCAAATAAGCCCTTTTGGAACTAAGGCATTTCGGTGGAGTAAGTTTTTCCTACAAGAAACAACAGTCAGATTGGATGTGGTAAACAAAGTTTACGCTGCAAAGTACTATCCAATTGACTTCTATGTGATGGTTGAAGGGCAAAGGATTTATTTCAATGTTAAGGCGTAA

Coding sequence (CDS)

ATGTCAAAATGTCATTCTAAACTCATAGTTTTGGAGCTTTCTCAGGGTGGCAGGAGGGTTCTTGAGCAAACTTCTAGTGCTGCATCACCTAACACATGCTATAGATGTGGTGAACAAGGGCATTTTGCTCGGGGGTGTGCAGGTTCCACCAAGGGAAAAGAAACCCTCTTGGATGCACTTGGTGCTATTTCAACTGCTTGCCACAAATTAATTTCTACTGTAGATCTTGCCATGCCCAATGCCATTGTAAATCTGGTATCTTCCTCTTGCTCCAAGAAAGCAAAGAAATTTCGAAGCAATAGATGCAAGGGGATAGACTTTAGTTTTGGTATACAACACATGCCACACACAGGAACTTTTAGTTGGTTATATTTGGATTGGAATTCTGTAATTGTAGATGACATTGTTGAGAAGAATGAAATTATTGTTGGTTTACTGTGTCAAGTATGCGATCTTGACGGTAGATTACTTGATGTCAATAAAATGTCAAGTAAAGGGACAAAGGAAAGGATGTCGAGAATACAAACCTCCAAGAAGAAAAAGGAGGGAATGAAACAACATGAACTCGCAACATTAGGTGAACAACTAGAGAAATTGTCAGCCAAATTTAAGGCTATAGAAGAGCAAGAGGTGGACCACCTCGAGGTCGTGGCAACAGAGCTTAAGGAAGAGCTAAATCAAATAAGCCCTTTTGGAACTAAGGCATTTCGGTGGAGTAAGTTTTTCCTACAAGAAACAACAGTCAGATTGGATGTGGTAAACAAAGTTTACGCTGCAAAGTACTATCCAATTGACTTCTATGTGATGGTTGAAGGGCAAAGGATTTATTTCAATGTTAAGGCGTAA

Protein sequence

MSKCHSKLIVLELSQGGRRVLEQTSSAASPNTCYRCGEQGHFARGCAGSTKGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFRSNRCKGIDFSFGIQHMPHTGTFSWLYLDWNSVIVDDIVEKNEIIVGLLCQVCDLDGRLLDVNKMSSKGTKERMSRIQTSKKKKEGMKQHELATLGEQLEKLSAKFKAIEEQEVDHLEVVATELKEELNQISPFGTKAFRWSKFFLQETTVRLDVVNKVYAAKYYPIDFYVMVEGQRIYFNVKA

Homology

[Close]

BLAST of MELO3C034995 vs. NCBI nr
Match: TYK11974.1 (hypothetical protein E5676_scaffold177G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 6.5e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 171 MSRIQTSKKKKEGMKQHELATLGEQLEKLSAKFKAIEEQEVDHLEVVATELKEELNQISP 230
           MSRIQTSKKKKEGMKQHELATLGEQLEKLSAKFKAIEEQEVDHLEVVATELKEELNQISP
Sbjct: 1   MSRIQTSKKKKEGMKQHELATLGEQLEKLSAKFKAIEEQEVDHLEVVATELKEELNQISP 60

Query: 231 FGTK 235
           FGTK
Sbjct: 61  FGTK 64

[Close]

BLAST of MELO3C034995 vs. NCBI nr
Match: XP_008449627.1 (PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-13
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1539 EGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1586

[Close]

BLAST of MELO3C034995 vs. NCBI nr
Match: TYJ96095.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-13
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1683 EGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1730

[Close]

BLAST of MELO3C034995 vs. NCBI nr
Match: XP_008449628.1 (PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-13
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1523 QGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1570

[Close]

BLAST of MELO3C034995 vs. NCBI nr
Match: XP_011657602.1 (proteasome adapter and scaffold protein ECM29 isoform X1 [Cucumis sativus] >XP_031743091.1 proteasome adapter and scaffold protein ECM29 isoform X1 [Cucumis sativus] >KGN48359.2 hypothetical protein Csa_004256 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D A+PNAIVNLVSSSCSKKAKKFR
Sbjct: 1545 EGKETILDALGAISTACHKLISTADPALPNAIVNLVSSSCSKKAKKFR 1592

[Close]

BLAST of MELO3C034995 vs. ExPASy TrEMBL
Match: A0A5D3CLC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001590 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 171 MSRIQTSKKKKEGMKQHELATLGEQLEKLSAKFKAIEEQEVDHLEVVATELKEELNQISP 230
           MSRIQTSKKKKEGMKQHELATLGEQLEKLSAKFKAIEEQEVDHLEVVATELKEELNQISP
Sbjct: 1   MSRIQTSKKKKEGMKQHELATLGEQLEKLSAKFKAIEEQEVDHLEVVATELKEELNQISP 60

Query: 231 FGTK 235
           FGTK
Sbjct: 61  FGTK 64

[Close]

BLAST of MELO3C034995 vs. ExPASy TrEMBL
Match: A0A5D3BCA4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00550 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-13
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1683 EGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1730

[Close]

BLAST of MELO3C034995 vs. ExPASy TrEMBL
Match: A0A1S3BMF7 (proteasome-associated protein ECM29 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491455 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-13
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1539 EGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1586

[Close]

BLAST of MELO3C034995 vs. ExPASy TrEMBL
Match: A0A1S3BN41 (proteasome-associated protein ECM29 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491455 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-13
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D AMPNAIVNLVSSSCSKKAKKFR
Sbjct: 1523 QGKETILDALGAISTACHKLISTADPAMPNAIVNLVSSSCSKKAKKFR 1570

[Close]

BLAST of MELO3C034995 vs. ExPASy TrEMBL
Match: A0A0A0KI82 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429070 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFR 99
            +GKET+LDALGAISTACHKLIST D A+PNAIVNLVSSSCSKKAKKFR
Sbjct: 1542 EGKETILDALGAISTACHKLISTADPALPNAIVNLVSSSCSKKAKKFR 1589

[Close]

BLAST of MELO3C034995 vs. TAIR 10
Match: AT2G26780.1 (ARM repeat superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-08
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 51   KGKETLLDALGAISTACHKLISTVDLAMPNAIVNLVSSSCSKKAKKFRSN 101
            +GK+ LLDALGA+S ACH+ I+  D   P  I++L+ S+C KK KK+R +
Sbjct: 1554 EGKDALLDALGALSVACHEAITKEDPTTPTTILSLICSACKKKLKKYRES 1603

The following BLAST results are available for this feature:

BLAST of MELO3C034995 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C034995 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11974.1	6.5e-23	100.00	hypothetical protein E5676_scaffold177G001590 [Cucumis melo var. makuwa]	[more]
XP_008449627.1	2.1e-13	91.67	PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis melo]	[more]
TYJ96095.1	2.1e-13	91.67	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
XP_008449628.1	2.1e-13	91.67	PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis melo]	[more]
XP_011657602.1	4.7e-13	89.58	proteasome adapter and scaffold protein ECM29 isoform X1 [Cucumis sativus] >XP_0...	[more]

BLAST of MELO3C034995 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLC9	3.2e-23	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCA4	1.0e-13	91.67	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G0...	[more]
A0A1S3BMF7	1.0e-13	91.67	proteasome-associated protein ECM29 homolog isoform X1 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3BN41	1.0e-13	91.67	proteasome-associated protein ECM29 homolog isoform X2 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0KI82	2.3e-13	89.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429070 PE=4 SV=1	[more]

BLAST of MELO3C034995 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26780.1	6.3e-08	50.00	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 189..224
None	No IPR available	GENE3D	4.10.60.10		coord: 12..56 e-value: 1.2E-6 score: 30.3
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 32..48 e-value: 0.0075 score: 24.3
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 31..46 e-value: 2.5E-4 score: 21.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 33..46 score: 10.394444
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 12..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034995.1	MELO3C034995.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding