MELO3C034952 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034952
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Vacuolar cation/proton exchanger 3
Location	chr11: 10843015 .. 10844194 (+)
RNA-Seq Expression	MELO3C034952
Synteny	MELO3C034952

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTACCGCAAGTGCAAGTTGCTTGATTGGTGTGGTACAGGAAACATAGTTGCTGAAGGGTGGATGGTCTACAAATGACCTAAAAGTTCTTGTTCATTATGTTTCCGTTGGTCCTCAAGCAGTAAGAGTTTGGATACACTTTCCAATAAGACATGATGCCTTTTGGTGGAGGCCAAATTCATAAATGACATACGTTGTAGATGCAATCGGCAGTACAATTGCGTGGCCATTAGACAAAAAATTGAGTACGTATATCTAGCTATCGATTATTTTATTTCTTTATTTCTTTATTTCTTTATTTCAATAACTTGAACTTTATTCCCATTGTAGGTTGATGTCGGGCTATATATGTATGCAATAGCTTGTCAGTAAACACAACCAAGCTAGAGTTATTTTGGATTTCTTATATCGACATATTTTGTAATTTATAAAGTGTATATTTTGTTTCATATCTCTAAGTTTTTTTACTGCTCATTGCAATTACTAGAAGAAATATGGCCTTTAATGTTGGTTGTAAAAAATGAAAACGGATCTTTAATGTCGCTTTTTAAAATGCAGATGTTTAATGTCGGTTTTAAACCGACATCAAAGATGAAGGATTAATGTTGGTTTTAAACCGTCATTAAAGATCTATTTTTTTCAAACCGACATTATAGATATATTAAACATAATAATTTTAAGTTTTTTGGAGTTTCATATATAAAAGAGGTTTCAAACCCTAAATCACCATCTCTCCTACCGCTTTCCATTTCTCTTGCCTTTTCTATTTCCCTTTCCCTTCCCCTTTCCTTCATCTGTCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCCCTTCCCCTTTCCTTCATCTGCCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCTCTTCCCCTTTCCTTCATCTACCGCTTTCCATTTCTCTTGCCTTTTCCATTTCCCTTTCCCTTCCCCTTTCCTTCATCTTCTTCAGCCGAAGGAAGACCCAGCGTCGAAACTTCTCCTTGCCATCGAACATCCGTTCGCCGGTCGTCGTGTCTCCCAACTGCGCTCAATCACCGCCTCGACCCTTCATCTGTCCAGAGCTAGCAGCATTGTGATGCTCTCTACTTACATTGCTTACTTGGTCTTTCAACTCTGGACTCATCGACAACTATTTGAAGCTAAGGT

mRNA sequence

ATGCTTTACCGCAAGTGCAAGTTGCTTGATTGGTGTGGTACAGGAAACATAGTTGCTGAAGGGTGGATGCCGAAGGAAGACCCAGCGTCGAAACTTCTCCTTGCCATCGAACATCCGTTCGCCGGTCGTCGTGTCTCCCAACTGCGCTCAATCACCGCCTCGACCCTTCATCTGTCCAGAGCTAGCAGCATTGTGATGCTCTCTACTTACATTGCTTACTTGGTCTTTCAACTCTGGACTCATCGACAACTATTTGAAGCTAAGGT

Coding sequence (CDS)

ATGCTTTACCGCAAGTGCAAGTTGCTTGATTGGTGTGGTACAGGAAACATAGTTGCTGAAGGGTGGATGCCGAAGGAAGACCCAGCGTCGAAACTTCTCCTTGCCATCGAACATCCGTTCGCCGGTCGTCGTGTCTCCCAACTGCGCTCAATCACCGCCTCGACCCTTCATCTGTCCAGAGCTAGCAGCATTGTGATGCTCTCTACTTACATTGCTTACTTGGTCTTTCAACTCTGGACTCATCGACAACTATTTGAAGCTAAG

Protein sequence

MLYRKCKLLDWCGTGNIVAEGWMPKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK

Homology

[Close]

BLAST of MELO3C034952 vs. NCBI nr
Match: KAA0034803.1 (vacuolar cation/proton exchanger 3 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 82/88 (93.18%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MLYRKCKLLDWCGTGNIVAEGWMPKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSR 60
          MLYRKCKLLDWCGTGNIVAEGWMPKEDPAS LLLAIEHPFAGRRVSQLRSI  STLHLSR
Sbjct: 1  MLYRKCKLLDWCGTGNIVAEGWMPKEDPASTLLLAIEHPFAGRRVSQLRSIAPSTLHLSR 60

Query: 61 ASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
          ASSIVMLSTYIA+LVFQLW HRQLFE K
Sbjct: 61 ASSIVMLSTYIAFLVFQLWIHRQLFEVK 88

[Close]

BLAST of MELO3C034952 vs. NCBI nr
Match: TYK09605.1 (G-box-binding factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 4.0e-27
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 15 GNIVAEGWMPKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYL 74
          G+I   G+ PKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYL
Sbjct: 8  GHIRGLGFEPKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYL 67

Query: 75 VFQLWTHRQLFEAK 89
          VFQLWTHRQLFEAK
Sbjct: 68 VFQLWTHRQLFEAK 81

[Close]

BLAST of MELO3C034952 vs. NCBI nr
Match: TYK21003.1 (G-box-binding factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 25  KEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQL 84
           KEDPA  LLLAIEHPFAGRRVSQLRSI ASTLHLSRAS IVMLS YIAYLVFQLWTHRQL
Sbjct: 52  KEDPAPTLLLAIEHPFAGRRVSQLRSIAASTLHLSRASIIVMLSAYIAYLVFQLWTHRQL 111

Query: 85  FEAK 89
           FEA+
Sbjct: 112 FEAE 115

[Close]

BLAST of MELO3C034952 vs. NCBI nr
Match: KAA0057591.1 (G-box-binding factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 25 KEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQL 84
          KEDPA  LLLAIEHPFAGRRVSQLRSI ASTLHLSRAS IVMLS YIAYLVFQLWTHRQL
Sbjct: 6  KEDPAPTLLLAIEHPFAGRRVSQLRSIAASTLHLSRASIIVMLSAYIAYLVFQLWTHRQL 65

Query: 85 FEAK 89
          FEA+
Sbjct: 66 FEAE 69

[Close]

BLAST of MELO3C034952 vs. NCBI nr
Match: XP_038882514.1 (vacuolar cation/proton exchanger 3-like [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 42  GRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           G   S   +  ASTLHLSRASSIVMLS YIAYLVFQLWTHRQLFEA+
Sbjct: 213 GYAASSTATAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAE 259

[Close]

BLAST of MELO3C034952 vs. ExPASy Swiss-Prot
Match: Q93Z81 (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana OX=3702 GN=CAX3 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.7e-07
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 51  ITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           I   +L LSR SSIVML  YIAYL+FQLWTHRQLFEA+
Sbjct: 229 INKMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQ 266

[Close]

BLAST of MELO3C034952 vs. ExPASy Swiss-Prot
Match: Q39253 (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana OX=3702 GN=CAX1 PE=1 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 6.9e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 56  LHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           L +SR  SIVML +YIAYLVFQLWTHRQLF+A+
Sbjct: 234 LSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQ 266

[Close]

BLAST of MELO3C034952 vs. ExPASy Swiss-Prot
Match: Q769E5 (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica OX=39947 GN=CAX1a PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 34  LAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFE 87
           L + +  A    S   +  A++L LSRA S VML++Y+AYL FQL THRQLFE
Sbjct: 205 LLLRYAVAAGEHSVSATSAAASLDLSRACSFVMLASYVAYLFFQLKTHRQLFE 257

[Close]

BLAST of MELO3C034952 vs. ExPASy Swiss-Prot
Match: Q5TKG3 (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica OX=39947 GN=CAX1b PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 54  STLHLSRASSIVMLSTYIAYLVFQLWTHRQLFE 87
           + LHLSRA SI+ML  Y+AYL FQL THRQLFE
Sbjct: 231 AALHLSRACSILMLIAYLAYLFFQLNTHRQLFE 263

[Close]

BLAST of MELO3C034952 vs. ExPASy TrEMBL
Match: A0A5A7SWA5 (Vacuolar cation/proton exchanger 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00330 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.4e-39
Identity = 82/88 (93.18%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MLYRKCKLLDWCGTGNIVAEGWMPKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSR 60
          MLYRKCKLLDWCGTGNIVAEGWMPKEDPAS LLLAIEHPFAGRRVSQLRSI  STLHLSR
Sbjct: 1  MLYRKCKLLDWCGTGNIVAEGWMPKEDPASTLLLAIEHPFAGRRVSQLRSIAPSTLHLSR 60

Query: 61 ASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
          ASSIVMLSTYIA+LVFQLW HRQLFE K
Sbjct: 61 ASSIVMLSTYIAFLVFQLWIHRQLFEVK 88

[Close]

BLAST of MELO3C034952 vs. ExPASy TrEMBL
Match: A0A5D3CDJ9 (G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00380 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 15 GNIVAEGWMPKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYL 74
          G+I   G+ PKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYL
Sbjct: 8  GHIRGLGFEPKEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYL 67

Query: 75 VFQLWTHRQLFEAK 89
          VFQLWTHRQLFEAK
Sbjct: 68 VFQLWTHRQLFEAK 81

[Close]

BLAST of MELO3C034952 vs. ExPASy TrEMBL
Match: A0A5A7UVQ0 (G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00660 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 25 KEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQL 84
          KEDPA  LLLAIEHPFAGRRVSQLRSI ASTLHLSRAS IVMLS YIAYLVFQLWTHRQL
Sbjct: 6  KEDPAPTLLLAIEHPFAGRRVSQLRSIAASTLHLSRASIIVMLSAYIAYLVFQLWTHRQL 65

Query: 85 FEAK 89
          FEA+
Sbjct: 66 FEAE 69

[Close]

BLAST of MELO3C034952 vs. ExPASy TrEMBL
Match: A0A5D3DBQ7 (G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00320 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 25  KEDPASKLLLAIEHPFAGRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQL 84
           KEDPA  LLLAIEHPFAGRRVSQLRSI ASTLHLSRAS IVMLS YIAYLVFQLWTHRQL
Sbjct: 52  KEDPAPTLLLAIEHPFAGRRVSQLRSIAASTLHLSRASIIVMLSAYIAYLVFQLWTHRQL 111

Query: 85  FEAK 89
           FEA+
Sbjct: 112 FEAE 115

[Close]

BLAST of MELO3C034952 vs. ExPASy TrEMBL
Match: A0A5A7SML5 (Vacuolar cation/proton exchanger OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold994G00030 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 42  GRRVSQLRSITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           G   S   +  ASTLHLSRASSIVMLS YIAYLVFQLWTHRQLFEA+
Sbjct: 145 GYAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAE 191

[Close]

BLAST of MELO3C034952 vs. TAIR 10
Match: AT3G51860.1 (cation exchanger 3 )

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-08
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 51  ITASTLHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           I   +L LSR SSIVML  YIAYL+FQLWTHRQLFEA+
Sbjct: 229 INKMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEAQ 266

[Close]

BLAST of MELO3C034952 vs. TAIR 10
Match: AT2G38170.1 (cation exchanger 1 )

HSP 1 Score: 51.2 bits (121), Expect = 4.9e-07
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 56  LHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           L +SR  SIVML +YIAYLVFQLWTHRQLF+A+
Sbjct: 234 LSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQ 266

[Close]

BLAST of MELO3C034952 vs. TAIR 10
Match: AT2G38170.2 (cation exchanger 1 )

HSP 1 Score: 51.2 bits (121), Expect = 4.9e-07
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 56  LHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           L +SR  SIVML +YIAYLVFQLWTHRQLF+A+
Sbjct: 234 LSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQ 266

[Close]

BLAST of MELO3C034952 vs. TAIR 10
Match: AT2G38170.3 (cation exchanger 1 )

HSP 1 Score: 51.2 bits (121), Expect = 4.9e-07
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 56  LHLSRASSIVMLSTYIAYLVFQLWTHRQLFEAK 89
           L +SR  SIVML +YIAYLVFQLWTHRQLF+A+
Sbjct: 234 LSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQ 266

The following BLAST results are available for this feature:

BLAST of MELO3C034952 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034803.1	1.3e-38	93.18	vacuolar cation/proton exchanger 3 [Cucumis melo var. makuwa]	[more]
TYK09605.1	4.0e-27	91.89	G-box-binding factor 1-like [Cucumis melo var. makuwa]	[more]
TYK21003.1	3.3e-21	90.63	G-box-binding factor 1-like [Cucumis melo var. makuwa]	[more]
KAA0057591.1	3.3e-21	90.63	G-box-binding factor 1-like [Cucumis melo var. makuwa]	[more]
XP_038882514.1	3.2e-08	76.60	vacuolar cation/proton exchanger 3-like [Benincasa hispida]	[more]

BLAST of MELO3C034952 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Z81	4.7e-07	73.68	Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana OX=3702 GN=CAX3 PE=1 ...	[more]
Q39253	6.9e-06	75.76	Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana OX=3702 GN=CAX1 PE=1 ...	[more]
Q769E5	1.3e-04	50.94	Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q5TKG3	1.7e-04	72.73	Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]

BLAST of MELO3C034952 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWA5	6.4e-39	93.18	Vacuolar cation/proton exchanger 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3CDJ9	1.9e-27	91.89	G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UVQ0	1.6e-21	90.63	G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DBQ7	1.6e-21	90.63	G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SML5	1.5e-08	76.60	Vacuolar cation/proton exchanger OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of MELO3C034952 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51860.1	3.4e-08	73.68	cation exchanger 3	[more]
AT2G38170.1	4.9e-07	75.76	cation exchanger 1	[more]
AT2G38170.2	4.9e-07	75.76	cation exchanger 1	[more]
AT2G38170.3	4.9e-07	75.76	cation exchanger 1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034952.1	MELO3C034952.1	mRNA