MELO3C034950.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034950.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr11: 11382058 .. 11383088 (-)
RNA-Seq ExpressionMELO3C034950.jh1
SyntenyMELO3C034950.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGGAATATGCAGAGACGTTCAGCGTGAAAGGGGGAGGTATACATATGTTTATGGAAACTTCACAAAATCCAGCGAAATAAACATCTACTTTTCAAAAATGCTCCCAATCGTTCACGTCTTCAATTTCGAGCAAACATTAGTCGTTCATCGTCTTTAATTTCGAGCAAACATTAGGGTTTACCTTCGTCGTCTCCAACAGGACCTTTGCTCCACGCCAGTTGAAAGAAAATCACTACGTTGTGAAGCCATTTTTCATTATGGTTAGTCTATTTTTAAACTTCGTATATCAAATAGAATGGATATATTTGTTGGGATCATATTTCTTTTCAGTCTGGAACCGTCTTTTTCATAGTATTTTATTAGAAAATGAGATTGAAGAAGCATTTAGGGTTTTTTAACAATATTGATTTCTACTGTGAAATTAATAGATGTAAAGTGTTATTTTACTCTTATAACAAAAATGAAGTAATGCATGTTGTATATATTTTGTTTTGAACTTTTTAATCTTAAAATGCTACTTTGAAAAGTGGATGTTGTTTCTATAAAAATCATAATATGGTAAATGGTAATTTATATTGTATATTAATCTCTATATGCAGTTAAAAAAATTGTGTAGAAGCAAGAGATGCCTAGAATAAAGGATGAAACATATGAAATCGAACAAGGATGATTCAATAATGATTGACGAGACGGAGATATATTTTAAAGTTTCTGAAGGTATATTTGAAATGGTATAAATTGTTAAACAAGATATAATATGTATATATATATCGTAGGATGAAGAAAGATATGAAGGAGCAATTAACTACGAACCATTGCAAATTGTATATCTAGACGATGATGAACAAGAATAAAGAGGAGCTATAGGTACATACAGATTGTGCTGTACTAGGAGAAGAAATATGTGAAACCGGATGTGGTATTTGAAATACCAGAGGCAAAGATGTCAATGCATGATCGAGGTGAACAACCAAAACCAGGTCTAAAAGGAATCATTCTTAGAATCGACCACACAAAAGGCTAG

mRNA sequence

ATGAAAAAGGAATATGCAGAGACGTTCAGCGTGAAAGGGGGAGGGTTTACCTTCGTCGTCTCCAACAGGACCTTTGCTCCACGCCAGTTGAAAGAAAATCACTACGTTGTGAAGCCATTTTTCATTATGGATGAAGAAAGATATGAAGGAGCAATTAACTACGAACCATTGCAAATTGAGAAGAAATATGTGAAACCGGATGTGGTATTTGAAATACCAGAGGCAAAGATGTCAATGCATGATCGAGGTGAACAACCAAAACCAGGTCTAAAAGGAATCATTCTTAGAATCGACCACACAAAAGGCTAG

Coding sequence (CDS)

ATGAAAAAGGAATATGCAGAGACGTTCAGCGTGAAAGGGGGAGGGTTTACCTTCGTCGTCTCCAACAGGACCTTTGCTCCACGCCAGTTGAAAGAAAATCACTACGTTGTGAAGCCATTTTTCATTATGGATGAAGAAAGATATGAAGGAGCAATTAACTACGAACCATTGCAAATTGAGAAGAAATATGTGAAACCGGATGTGGTATTTGAAATACCAGAGGCAAAGATGTCAATGCATGATCGAGGTGAACAACCAAAACCAGGTCTAAAAGGAATCATTCTTAGAATCGACCACACAAAAGGCTAG

Protein sequence

MKKEYAETFSVKGGGFTFVVSNRTFAPRQLKENHYVVKPFFIMDEERYEGAINYEPLQIEKKYVKPDVVFEIPEAKMSMHDRGEQPKPGLKGIILRIDHTKG
Homology
[Close]
BLAST of MELO3C034950.jh1 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.35e-10
Identity = 36/66 (54.55%), Postives = 37/66 (56.06%), Query Frame = 0 

Query: 42 IMDEERYEGAINYEPLQI----------------------EKKYVKPDVVFEIPEAKMSM 85
          I DEERYE AINYEPLQ                       EKKYVKPDVVFE PE KM  
Sbjct: 5  IEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMPT 64

[Close]
BLAST of MELO3C034950.jh1 vs. NCBI nr
Match: TYK30853.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.47e-09
Identity = 35/64 (54.69%), Postives = 36/64 (56.25%), Query Frame = 0 

Query: 44  DEERYEGAINYEPLQI----------------------EKKYVKPDVVFEIPEAKMSMHD 85
           DEERYE AINYEPLQ                       EKKYVKPDVVFE PE KM  HD
Sbjct: 145 DEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMPTHD 204

[Close]
BLAST of MELO3C034950.jh1 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 4.51e-05
Identity = 30/60 (50.00%), Postives = 34/60 (56.67%), Query Frame = 0 

Query: 39 PFFIMDEER----YEGAINYE---------PLQIEKKYVKPDVVFEIPEAKMSMHDRGEQ 85
          P  I D E     Y+G   YE          L  EKKYVKPDVVFE P+ KM+MHDRGE+
Sbjct: 23 PIMINDTEVCGTVYKGDDEYELRGPTCTQIMLYEEKKYVKPDVVFETPKTKMAMHDRGEE 82

[Close]
BLAST of MELO3C034950.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SWP5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003940 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.62e-10
Identity = 36/66 (54.55%), Postives = 37/66 (56.06%), Query Frame = 0 

Query: 42 IMDEERYEGAINYEPLQI----------------------EKKYVKPDVVFEIPEAKMSM 85
          I DEERYE AINYEPLQ                       EKKYVKPDVVFE PE KM  
Sbjct: 5  IEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMPT 64

[Close]
BLAST of MELO3C034950.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E406 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00510 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.11e-10
Identity = 35/64 (54.69%), Postives = 36/64 (56.25%), Query Frame = 0 

Query: 44  DEERYEGAINYEPLQI----------------------EKKYVKPDVVFEIPEAKMSMHD 85
           DEERYE AINYEPLQ                       EKKYVKPDVVFE PE KM  HD
Sbjct: 145 DEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMPTHD 204

[Close]
BLAST of MELO3C034950.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.18e-05
Identity = 30/60 (50.00%), Postives = 34/60 (56.67%), Query Frame = 0 

Query: 39 PFFIMDEER----YEGAINYE---------PLQIEKKYVKPDVVFEIPEAKMSMHDRGEQ 85
          P  I D E     Y+G   YE          L  EKKYVKPDVVFE P+ KM+MHDRGE+
Sbjct: 23 PIMINDTEVCGTVYKGDDEYELRGPTCTQIMLYEEKKYVKPDVVFETPKTKMAMHDRGEE 82

The following BLAST results are available for this feature:
BLAST of MELO3C034950.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035692.13.35e-1054.55Cell division protein ftsH [Cucumis melo var. makuwa][more]
TYK30853.11.47e-0954.69retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066916.14.51e-0550.00Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
BLAST of MELO3C034950.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034950.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SWP51.62e-1054.55Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5D3E4067.11e-1054.69Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VKG52.18e-0550.00Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
BLAST of MELO3C034950.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034950.jh1.t1MELO3C034950.jh1.t1mRNA