MELO3C034921 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034921
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr11: 9576425 .. 9577112 (+)
RNA-Seq Expression	MELO3C034921
Synteny	MELO3C034921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTTGCAAATGACCAGTTAAAGACAATTGCAACAGAAGTTGTGAAACAACATCAAAATATTTCTGAACTAAATAGTCGAGAGAGGATAAAGCTTATGCAAATAATATTTTGCAGTGTGGATGACATAAAGGGATTCATGTGGATACCTATGAACCTGAAATTGGAGTATTGCAACGTTTTGTTGAAAGATAATATTTGTCAAGTTTTCGATCTTTTTGCTTCTTTTTTGTGTAGGTGGTTGTGTTTTTCTTTCCCTTTATTTTGAAATTATAACATGTATTATAATAATTTGCATCCCAAGTACTGATTATAATAACACAAATTATAATAGTCTACATTATAAACTCAAACTATAGTAACTCACATACTATTATAATACAAACTATTGTAACCTACTTCACGCCCGAAACAACCCTAAATAAATACAATTTTTTCTTCTAAACAAATAACCACAAAATTTAAAGTTCACTTCGACAGGAAAAATATAAATAATTAATAAATATGGAGTATAGTATAGTGAAAAACAAAGCCGAACTAACCCCAAAGTCAGGGTTTTATTGGGGTTCAGCCCACCTCGTTTTGTTCTGTTCAACTTCTTTACACTACACATCGGAACTTCCCTTATTGCTCAAGGACACACTCCCGGCGGCAACTATCTTCTCTATGCGTGTGAGTTTCTCTAA

mRNA sequence

ATGGAATTTGCAAATGACCAGTTAAAGACAATTGCAACAGAAGTTGTGAAACAACATCAAAATATTTCTGAACTAAATAGTCGAGAGAGGATAAAGCTTATGCAAATAATATTTTGCAGTGTGGATGACATAAAGGGATTCATGTGGATACCTATGAACCTGAAATTGGAGTATTGCAACGTTTTGTTGAAAGATAATATTTGTCAATATAGTGAAAAACAAAGCCGAACTAACCCCAAAGTCAGGGTTTTATTGGGGTTCAGCCCACCTCGTTTTGTTCTGTTCAACTTCTTTACACTACACATCGGAACTTCCCTTATTGCTCAAGGACACACTCCCGGCGGCAACTATCTTCTCTATGCGTGTGAGTTTCTCTAA

Coding sequence (CDS)

ATGGAATTTGCAAATGACCAGTTAAAGACAATTGCAACAGAAGTTGTGAAACAACATCAAAATATTTCTGAACTAAATAGTCGAGAGAGGATAAAGCTTATGCAAATAATATTTTGCAGTGTGGATGACATAAAGGGATTCATGTGGATACCTATGAACCTGAAATTGGAGTATTGCAACGTTTTGTTGAAAGATAATATTTGTCAATATAGTGAAAAACAAAGCCGAACTAACCCCAAAGTCAGGGTTTTATTGGGGTTCAGCCCACCTCGTTTTGTTCTGTTCAACTTCTTTACACTACACATCGGAACTTCCCTTATTGCTCAAGGACACACTCCCGGCGGCAACTATCTTCTCTATGCGTGTGAGTTTCTCTAA

Protein sequence

MEFANDQLKTIATEVVKQHQNISELNSRERIKLMQIIFCSVDDIKGFMWIPMNLKLEYCNVLLKDNICQYSEKQSRTNPKVRVLLGFSPPRFVLFNFFTLHIGTSLIAQGHTPGGNYLLYACEFL

Homology

[Close]

BLAST of MELO3C034921 vs. NCBI nr
Match: KAA0040620.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05667.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-13
Identity = 48/81 (59.26%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1   MEFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKG 60
           +E ANDQLK IA               +VVKQ Q+I EL SR R+KLMQIIFCSVD I+G
Sbjct: 151 IESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFCSVDGIEG 210

Query: 61  FMWIPMNLKLEYCNVLLKDNI 68
           F+  P  LKLEYCNVLL+DNI
Sbjct: 211 FLLCPTKLKLEYCNVLLEDNI 231

[Close]

BLAST of MELO3C034921 vs. NCBI nr
Match: KAA0066604.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-12
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1   MEFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKG 60
           MEF NDQLKTIA               EVVKQ QNI EL SR+R KLMQI+F SV+ I+G
Sbjct: 50  MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 109

Query: 61  FMWIPMNLKLEYCNVLLKD 66
           F+ IP+ LKLEYCN+LL++
Sbjct: 110 FLSIPIELKLEYCNILLQN 128

[Close]

BLAST of MELO3C034921 vs. NCBI nr
Match: KAA0063430.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK11691.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-12
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1   MEFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKG 60
           MEF NDQLK IA               EVVKQ Q+I EL S++R KLMQI+F SV+ I+G
Sbjct: 351 MEFGNDQLKAIANWPKEKRATEVELCVEVVKQLQDIPELQSQDRAKLMQILFRSVETIEG 410

Query: 61  FMWIPMNLKLEYCNVLLKDNI 68
           F+ IP+ LKLEYCN+LL++N+
Sbjct: 411 FLSIPLELKLEYCNILLQNNV 431

[Close]

BLAST of MELO3C034921 vs. NCBI nr
Match: KAE8646815.1 (hypothetical protein Csa_005367, partial [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 5.1e-12
Identity = 46/80 (57.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1   MEFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKG 60
           ME  NDQLK IA               EVVKQ Q+ISEL +R+R+KLMQIIF  VDDI+G
Sbjct: 48  MEVRNDQLKAIANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEG 107

Query: 61  FMWIPMNLKLEYCNVLLKDN 67
           F+  P  LKLEYC VLL+DN
Sbjct: 108 FLSCPTKLKLEYCRVLLEDN 127

[Close]

BLAST of MELO3C034921 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-11
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 2   EFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKGF 61
           EF NDQLKTI               TEVVKQ Q+I +L S++R KLMQI+F SV+ I+GF
Sbjct: 184 EFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGF 243

Query: 62  MWIPMNLKLEYCNVLLKDNI 68
           + IP  LKLEYCN+LL++N+
Sbjct: 244 LSIPTKLKLEYCNILLENNV 263

[Close]

BLAST of MELO3C034921 vs. ExPASy TrEMBL
Match: A0A5D3C1H4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001300 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 48/81 (59.26%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1   MEFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKG 60
           +E ANDQLK IA               +VVKQ Q+I EL SR R+KLMQIIFCSVD I+G
Sbjct: 151 IESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFCSVDGIEG 210

Query: 61  FMWIPMNLKLEYCNVLLKDNI 68
           F+  P  LKLEYCNVLL+DNI
Sbjct: 211 FLLCPTKLKLEYCNVLLEDNI 231

[Close]

BLAST of MELO3C034921 vs. ExPASy TrEMBL
Match: A0A0A0KFW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1   MEFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKG 60
           ME  NDQLK IA               EVVKQ Q+ISEL +R+R+KLMQIIF  VDDI+G
Sbjct: 48  MEVRNDQLKAIANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEG 107

Query: 61  FMWIPMNLKLEYCNVLLKDNI 68
           F+  P  LKLEYC VLL+DN+
Sbjct: 108 FLSCPTKLKLEYCRVLLEDNV 128

[Close]

BLAST of MELO3C034921 vs. ExPASy TrEMBL
Match: A0A5D3CT52 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00400 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1   MEFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKG 60
           MEF NDQLKTIA               EVVKQ QNI EL SR+R KLMQI+F SV+ I+G
Sbjct: 50  MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 109

Query: 61  FMWIPMNLKLEYCNVLLKD 66
           F+ IP+ LKLEYCN+LL++
Sbjct: 110 FLSIPIELKLEYCNILLQN 128

[Close]

BLAST of MELO3C034921 vs. ExPASy TrEMBL
Match: A0A5A7V8C5 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00690 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 1   MEFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKG 60
           MEF NDQLK IA               EVVKQ Q+I EL S++R KLMQI+F SV+ I+G
Sbjct: 351 MEFGNDQLKAIANWPKEKRATEVELCVEVVKQLQDIPELQSQDRAKLMQILFRSVETIEG 410

Query: 61  FMWIPMNLKLEYCNVLLKDNI 68
           F+ IP+ LKLEYCN+LL++N+
Sbjct: 411 FLSIPLELKLEYCNILLQNNV 431

[Close]

BLAST of MELO3C034921 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-12
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 2   EFANDQLKTIA--------------TEVVKQHQNISELNSRERIKLMQIIFCSVDDIKGF 61
           EF NDQLKTI               TEVVKQ Q+I +L S++R KLMQI+F SV+ I+GF
Sbjct: 184 EFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGF 243

Query: 62  MWIPMNLKLEYCNVLLKDNI 68
           + IP  LKLEYCN+LL++N+
Sbjct: 244 LSIPTKLKLEYCNILLENNV 263

The following BLAST results are available for this feature:

BLAST of MELO3C034921 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040620.1	2.7e-13	59.26	retrotransposon protein [Cucumis melo var. makuwa] >TYK05667.1 retrotransposon p...	[more]
KAA0066604.1	3.9e-12	58.23	retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon p...	[more]
KAA0063430.1	3.9e-12	54.32	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK11691.1 putative nucleas...	[more]
KAE8646815.1	5.1e-12	57.50	hypothetical protein Csa_005367, partial [Cucumis sativus]	[more]
KAA0031678.1	1.9e-11	53.75	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]

BLAST of MELO3C034921 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1H4	1.3e-13	59.26	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KFW0	1.1e-12	56.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1	[more]
A0A5D3CT52	1.9e-12	58.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V8C5	1.9e-12	54.32	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BZU3	9.4e-12	53.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C034921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034921.1	MELO3C034921.1	mRNA