MELO3C034906.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C034906.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr11: 9569258 .. 9570197 (+)
RNA-Seq Expression	MELO3C034906.jh1
Synteny	MELO3C034906.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGAAATACTGCTTCAGCTGGCGGTAAGAAGAGTGGAAAGGTGGCTTCAAGTTATGGAAATGATGGTGCTTCTCAAAGGTGTTTTAACTTGAGACTTGGTGCAGGTTGTGTTTTATTTTTAAATTAACTTCAAGTTATGCTACTTTTTGTTTTTTAAATTTTCAAATTTCTTTTTTGATAATTTTGTACATTCGTAAAGAGTATATTACAAAAAGTTGATCGAACAACTCTTGCAGGGCCTGTTAATGAGCCTAGTTCTTCGAGTAGGGAACCTAATGCTAAAGCTTAAACTCATAACGACCAAGTTTAAGGTAAAAGGATTGGACATGATACATAACATAACTGAGACTTGAGATTATTCATATTATCTTTGCATTTAGTTTTAACTTTTAAGAATATTTTCTTTTGGGAGAGTATGTCTTCTCTTTACATTTACTTTTAGGATTGATGCATTTATTTCACAGCAATGAGCAATGGTTTATTAATTGATGATGATGTTAGATATTGATTCTGCTCGTTGTTTTTTAGCTATTTACCTGAGGCATACTGGAAATATTTTTCATGTAACAGCCAACAGGATGCCATATTTATTATTTATTCACAAAGTTCATTTGTTGTTATAGTTTGTTGCCATATTTTTCAGTCAGGTTATGGCAAGGAGGAAATACTGCTGGCCCTGGTGTGGTGTTTTTTCTTTTAAAGAGTTTTTTAAAAAATCTTTGTGATATGTGGTTTGCTTGCTTTGAACGACCTTTTTTTTTCTTACATAAGTTGGTTTCTGTTTTTTACATTTTTGTTTTGTTTGTGATATGGGTACTTAGTTACGTAGGTTTCGGTTGCGAGGACTTGCAATTGTGTATTTGTATATTTTTTTGCTTCCGTAGAGGCAGCTTGACATTGAGTTTAAAGAATCTGCTGATGAACAGAAACGGTGA

mRNA sequence

ATGTTAGGAAATACTGCTTCAGCTGGCGGTAAGAAGAGTGGAAAGGTGGCTTCAAGTTATGGAAATGATGGTGCTTCTCAAAGAGTATATTACAAAAAGTTGATCGAACAACTCTTGCAGGGCCTGTTAATGAGCCTAGTTCTTCGAGTAGGGAACCTAATGCTAAAGCTTAAACTCATAACGACCAAGTTTAAGTCAGGTTATGGCAAGGAGGAAATACTGCTGGCCCTGAGGCAGCTTGACATTGAGTTTAAAGAATCTGCTGATGAACAGAAACGGTGA

Coding sequence (CDS)

ATGTTAGGAAATACTGCTTCAGCTGGCGGTAAGAAGAGTGGAAAGGTGGCTTCAAGTTATGGAAATGATGGTGCTTCTCAAAGAGTATATTACAAAAAGTTGATCGAACAACTCTTGCAGGGCCTGTTAATGAGCCTAGTTCTTCGAGTAGGGAACCTAATGCTAAAGCTTAAACTCATAACGACCAAGTTTAAGTCAGGTTATGGCAAGGAGGAAATACTGCTGGCCCTGAGGCAGCTTGACATTGAGTTTAAAGAATCTGCTGATGAACAGAAACGGTGA

Protein sequence

MLGNTASAGGKKSGKVASSYGNDGASQRVYYKKLIEQLLQGLLMSLVLRVGNLMLKLKLITTKFKSGYGKEEILLALRQLDIEFKESADEQKR

Homology

[Close]

BLAST of MELO3C034906.jh1 vs. NCBI nr
Match: TYJ98377.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 5.27e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 3  GNTASAGGKKSGKVASSYGNDGASQRVYYKKL 34
          GNTASAGGKKSGKVASSYGNDGASQR +  +L
Sbjct: 48 GNTASAGGKKSGKVASSYGNDGASQRCFNLRL 79

[Close]

BLAST of MELO3C034906.jh1 vs. NCBI nr
Match: TYJ99642.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 1.37e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   MLGNTASAGGKKSGKVASSYGNDGASQRVYYKKL 34
           MLGNTASAGG+KSGKVASS GNDGA QR +  +L
Sbjct: 91  MLGNTASAGGRKSGKVASSSGNDGAFQRCFNLRL 124

[Close]

BLAST of MELO3C034906.jh1 vs. NCBI nr
Match: KAA0054817.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 1.37e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   MLGNTASAGGKKSGKVASSYGNDGASQRVYYKKL 34
           MLGNTASAGG+KSGKVASS GNDGA QR +  +L
Sbjct: 91  MLGNTASAGGRKSGKVASSSGNDGAFQRCFNLRL 124

[Close]

BLAST of MELO3C034906.jh1 vs. NCBI nr
Match: KAA0066466.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 47.0 bits (110), Expect = 3.30e-04
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 3  GNTASAGGKKSGKVASSYGNDGASQRVYYKKL 34
          GNTASAGG+KSGKVASS GNDGASQR +  +L
Sbjct: 48 GNTASAGGRKSGKVASSSGNDGASQRCFNLRL 79

[Close]

BLAST of MELO3C034906.jh1 vs. NCBI nr
Match: KAA0056034.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 3.81e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 40 QGLLMSLVLRVGNLMLKLKLITTKFKSG 67
          QGLLMSLVLRVGNLMLKLKLITTKFK  
Sbjct: 28 QGLLMSLVLRVGNLMLKLKLITTKFKGS 55

[Close]

BLAST of MELO3C034906.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BGX8 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001160 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.55e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 3  GNTASAGGKKSGKVASSYGNDGASQRVYYKKL 34
          GNTASAGGKKSGKVASSYGNDGASQR +  +L
Sbjct: 48 GNTASAGGKKSGKVASSYGNDGASQRCFNLRL 79

[Close]

BLAST of MELO3C034906.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UJP1 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G001090 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.64e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   MLGNTASAGGKKSGKVASSYGNDGASQRVYYKKL 34
           MLGNTASAGG+KSGKVASS GNDGA QR +  +L
Sbjct: 91  MLGNTASAGGRKSGKVASSSGNDGAFQRCFNLRL 124

[Close]

BLAST of MELO3C034906.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BIS2 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00150 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.64e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   MLGNTASAGGKKSGKVASSYGNDGASQRVYYKKL 34
           MLGNTASAGG+KSGKVASS GNDGA QR +  +L
Sbjct: 91  MLGNTASAGGRKSGKVASSSGNDGAFQRCFNLRL 124

[Close]

BLAST of MELO3C034906.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VJF0 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005670 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.60e-04
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 3  GNTASAGGKKSGKVASSYGNDGASQRVYYKKL 34
          GNTASAGG+KSGKVASS GNDGASQR +  +L
Sbjct: 48 GNTASAGGRKSGKVASSSGNDGASQRCFNLRL 79

[Close]

BLAST of MELO3C034906.jh1 vs. ExPASy TrEMBL
Match: A0A5A7ULG7 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001890 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.85e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 40 QGLLMSLVLRVGNLMLKLKLITTKFKSG 67
          QGLLMSLVLRVGNLMLKLKLITTKFK  
Sbjct: 28 QGLLMSLVLRVGNLMLKLKLITTKFKGS 55

The following BLAST results are available for this feature:

BLAST of MELO3C034906.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98377.1	5.27e-06	84.38	G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa]	[more]
TYJ99642.1	1.37e-04	76.47	G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0054817.1	1.37e-04	76.47	G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0066466.1	3.30e-04	78.13	G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0056034.1	3.81e-04	92.86	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034906.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034906.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGX8	2.55e-06	84.38	G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UJP1	6.64e-05	76.47	G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BIS2	6.64e-05	76.47	G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VJF0	1.60e-04	78.13	G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7ULG7	1.85e-04	92.86	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of MELO3C034906.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034906.jh1.t1	MELO3C034906.jh1.t1	mRNA