MELO3C034891.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034891.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionAP-3 complex subunit sigma-like
Locationchr11: 9200068 .. 9201672 (+)
RNA-Seq ExpressionMELO3C034891.jh1
SyntenyMELO3C034891.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTATTTTCAGTTCTTTTGATGTTTATGCTTTGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTAATTTGGGCCTCAAGAAATTAGTACGAACTATGTTGTAGAATTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAAAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCGAAGGTATTTTAGATTTTATTTGTCTTTGTCTTGAATTAAGGGCTATTCTTGTGGTTAGTTTCTGACGGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATCAGCTTACTCTTAATAGTTGTTAGTTGATTTCTTTAACTGAATAGGTTTTGAACATACTTTGTTGTTGTGATGTTATCTACTTCTTGTAGATTTGCTCTGCTGTTGGTGGTACTTATTTTAGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCAAGTTTCATTCAAGGTCATTGAGTTCGGTTGATAGAAGTAATGTTTTGCATATGACAATATCGAACAAATATGTAAAGTTTTCAAAATGTTGATACATATATGGTAAAATGTTAATATATGCTAAAGTTTTGGAATTGTTCTAGTGCATATTTATGTTTGAGTTTTAAAACTATATTTGATGTACATTTGTCGTTTATATGTAGTTGAGTTCTTGGACCAATAGGAGCATAATACAGGAACAATAATATATATAAATTACAATTAAAAAATGGAAAATTGCTTGACGGTTTTGAAATATCATGAACAATAAATGTCTTGACGGTACACAAATGTCATAAACAACAAAATTCTTGACGGTTCTAAAATGTCATTAAAAAGCATACTCTTGACAGTTCCCAAATGTCATAAATAATCACTTTCTTGACGGTTATTAAATGTCATGAAAAATGCAATCTTGACGGTTTTAAAATGTCATGAATATTCGTATTCTTGACAGTTTTTGGCATTCATAGTCACATTCTCGACAGTTCTAAACTGTCATTAAAACTTATAATCTTGACGGTTCTAAACTGTCATGAATAATTGAATACTTGACGGTTATAAACTGTCAATGTTAATAATTCTTGACGTTTTTTACAACTGTCAAGAAAATTACCTTTCTTGACACTGGATTCAACGACGGTTTTAAAACCGTCAAGAATAATCATTCTTGACAGTTTAAAACTGTCAAGAGAGTTAGTTTCTGTAGTAGTGAAATATAGAGAATAAGAAGAAGAAAAATGTCAGAAATGGAAGGGAGTTCAAACCGGCTGATGCTATACACAATAATTTGAACTCTGAATCGAAGGGAAATAGGGAAAAGAAGAAGAAGAAACAAGAAGAAATGCCATATTGTTCGGTGATGGAAGAGAAATCGAAAAGTCAATACGAGTTGAAGGGATGGGTGAAGAGGCGTTGA

mRNA sequence

TGTATTTTCAGTTCTTTTGATGTTTATGCTTTGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTAATTTGGGCCTCAAGAAATTAGTACGAACTATGTTGTAGAATTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAAAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCGAAGATTTGCTCTGCTGTTGGTGAGAATAAGAAGAAGAAAAATGTCAGAAATGGAAGGGAGTTCAAACCGGCTGATGCTATACACAATAATTTGAACTCTGAATCGAAGGGAAATAGGGAAAAGAAGAAGAAGAAACAAGAAGAAATGCCATATTGTTCGGTGATGGAAGAGAAATCGAAAAGTCAATACGAGTTGAAGGGATGGGTGAAGAGGCGTTGA

Coding sequence (CDS)

ATGCAAAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCGAAGATTTGCTCTGCTGTTGGTGAGAATAAGAAGAAGAAAAATGTCAGAAATGGAAGGGAGTTCAAACCGGCTGATGCTATACACAATAATTTGAACTCTGAATCGAAGGGAAATAGGGAAAAGAAGAAGAAGAAACAAGAAGAAATGCCATATTGTTCGGTGATGGAAGAGAAATCGAAAAGTCAATACGAGTTGAAGGGATGGGTGAAGAGGCGTTGA

Protein sequence

MQNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKICSAVGENKKKKNVRNGREFKPADAIHNNLNSESKGNREKKKKKQEEMPYCSVMEEKSKSQYELKGWVKRR
Homology
[Close]
BLAST of MELO3C034891.jh1 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 6.53e-16
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 3   NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKI 40
           NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKF 138

[Close]
BLAST of MELO3C034891.jh1 vs. NCBI nr
Match: TYK03061.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 8.24e-16
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKICSAVG 45
           ++YK NAYTKADLQC NAYTKEVESC PSDANINNVAKI SAVG
Sbjct: 94  KSYKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAKIGSAVG 137

[Close]
BLAST of MELO3C034891.jh1 vs. NCBI nr
Match: KAG6604474.1 (hypothetical protein SDJN03_05083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 49.7 bits (117), Expect = 4.06e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCMNAYTKEVE----SCFPSDANINNVAKICSAV 44
           ++YKRNAYT+ADLQC NA     +    +C  SDANINNV K+  A+
Sbjct: 180 EDYKRNAYTEADLQCTNAIQSMEQRLRAACHASDANINNVVKVLGAL 226

[Close]
BLAST of MELO3C034891.jh1 vs. NCBI nr
Match: XP_022926092.1 (guanylate-binding protein 7-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 49.7 bits (117), Expect = 4.32e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCMNAYTKEVE----SCFPSDANINNVAKICSAV 44
           ++YKRNAYT+ADLQC NA     +    +C  SDANINNV K+  A+
Sbjct: 263 EDYKRNAYTEADLQCTNAIQSMEQRLRAACHASDANINNVVKVLGAL 309

[Close]
BLAST of MELO3C034891.jh1 vs. NCBI nr
Match: KAG6581332.1 (Guanylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 49.7 bits (117), Expect = 4.35e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCMNAYTKEVE----SCFPSDANINNVAKICSAV 44
           ++YKRNAYT+ADLQC NA     +    +C  SDANINNV K+  A+
Sbjct: 422 EDYKRNAYTEADLQCTNAIQSMEQRLRAACHASDANINNVVKVLGAL 468

[Close]
BLAST of MELO3C034891.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CL75 (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.16e-16
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 3   NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKI 40
           NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKF 138

[Close]
BLAST of MELO3C034891.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BTL5 (Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001620 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.99e-16
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKICSAVG 45
           ++YK NAYTKADLQC NAYTKEVESC PSDANINNVAKI SAVG
Sbjct: 94  KSYKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAKIGSAVG 137

[Close]
BLAST of MELO3C034891.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EDH7 (guanylate-binding protein 7-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433312 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.09e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCMNAYTKEVE----SCFPSDANINNVAKICSAV 44
           ++YKRNAYT+ADLQC NA     +    +C  SDANINNV K+  A+
Sbjct: 263 EDYKRNAYTEADLQCTNAIQSMEQRLRAACHASDANINNVVKVLGAL 309

[Close]
BLAST of MELO3C034891.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EDW6 (guanylate-binding protein 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433312 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.11e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCMNAYTKEVE----SCFPSDANINNVAKICSAV 44
           ++YKRNAYT+ADLQC NA     +    +C  SDANINNV K+  A+
Sbjct: 422 EDYKRNAYTEADLQCTNAIQSMEQRLRAACHASDANINNVVKVLGAL 468

[Close]
BLAST of MELO3C034891.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KI62 (GB1/RHD3-type G domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G518180 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.87e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCMNAYTKEVE----SCFPSDANINNVAKICSAV 44
           ++YKRNAYT+ADLQC NA     +    +C  SDANINNV K+  A+
Sbjct: 416 EDYKRNAYTEADLQCTNAIQSMEKRLRVACHASDANINNVVKVLGAL 462

The following BLAST results are available for this feature:
BLAST of MELO3C034891.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464326.16.53e-1697.37PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo][more]
TYK03061.18.24e-1686.36putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa][more]
KAG6604474.14.06e-0453.19hypothetical protein SDJN03_05083, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022926092.14.32e-0453.19guanylate-binding protein 7-like isoform X2 [Cucurbita moschata][more]
KAG6581332.14.35e-0453.19Guanylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of MELO3C034891.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034891.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CL753.16e-1697.37AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=... [more]
A0A5D3BTL53.99e-1686.36Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A6J1EDH72.09e-0453.19guanylate-binding protein 7-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1EDW62.11e-0453.19guanylate-binding protein 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A0A0KI622.87e-0453.19GB1/RHD3-type G domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51... [more]
BLAST of MELO3C034891.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034891.jh1.t1MELO3C034891.jh1.t1mRNA