MELO3C034843.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034843.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein Ycf2-like
Locationchr11: 8100180 .. 8101779 (-)
RNA-Seq ExpressionMELO3C034843.jh1
SyntenyMELO3C034843.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGTTCAATAATCTCCAAAGACCCTATAATTAAATAAAACTTTGCACCCACAATTGAAGATTCTACTTTCCCCCCAAAACCAAAAAATAACCCATCAAATCACATTCAAAGCTCTACAAATTATCACATCTCTTCCATTTTGTGTAAGCCACCGTTTCGATTTCCTACTAAATTCTCGTTTGGAAACACAAGGAGATTTTGAAAAGTCTTCACACCATTTTGAACCATAATCTTCAAACCCTAACCTTCACGTTCCTAATCTCATTTCACTGTTCGTCCCTTCGAATCTTCATCGTTCATCTCTTCCGTAAGAAACACCCTTCGAATCTTCATTGAACCTTCAAGAAACATAGTTCCTCCCTTCTTCAAGCATTCGAATCTTCAAAAACTTTTTTGTTCAAATCATTCGTATCTTCAAAAACACCGTTCGTCCCTTTGAATCTTCATCGTTCGTCTCTTCCCTTCGTATCTTTCGTTCCCTTCATCTACTTCAGAAATCCTTAAATTTCTGCTTCGGTTCGTCGTTCCCTTCATCTCATACCTTCGTCTGCTGCAAATTCTTAAAATTTTTTGCCATTCTTCATACGTTCGGCTCAAATCGGTGAGTTCTTCAAATTCTTCAATGTATTTTCTTCTTTAGATTTCTTCTTTGCATTATAGTTCTTTATTTAACTAGAATTCGTTTAGTTTTTCAGTAGTTTCCAATGTTGTGATGTTTAATGTTCCGATATTTTGAAAATTGAATAATATTTTTTTTCTTTTTAATTTTATGTAATATTTATAAATATATTTGGGGATTTTTTTGTTTATTTAATTATCTATTTCGATTACATAAACAATATAGAAACTGATGTGTCCTTTATTTTAGGAAGAAGAAGAGGGATTTGTTGTATATTTATGAATGTATATTGTTTTTATAAATTGTATAAAATCAAAAGATGAAAAAGGAGAAGGGAGAAGTCAGAACGAGAAGTGACCGGTTAAGAGCCGTAGGGATCACTGGTTCGAAAAAACCATTGCCAACGGGGATTCAAACTCTGTCAAGTTCTTCCAATGAGGTATTAATGTATATTTTTAAGAATTACACATAAATTGTAGATACTTATAACTTTTTGTATGACTAATTATAGCAGAGACCAGAAGATACAATGGTGGAGGGGTCGGAAAGCAAGCGAGAAAGTCCAATAACTTCGAAAAATAGGGGGAGGAATGAGTCTTCAAAATAAGATGCCACTGTAAAGAAGAAATAGAGGATAAAAAGCTTGGTAAACTACCTCATTATGATTTATTTTCTAATGAGTACAATGAAGGTTTTGATGTTGTGGTCTGTGTAGGTTTCAAAAAGGCAAGTTTACAGAAGAAAACATGAATAAAAGAAATAAGAAGAGATTGAAGAAAAGGTATGTGTTTTACCCTTTGTTGTACTTCAATTCCTAAATGTATTTTATTATATAAATTGATAATATAACGTTGAAAAATAGGAAAATACTGAAAGTGAAGAAGAGGAACAAGGAGAAGAAGATGAACATGAAGAAGAAGATAAACAAGGAGAAGAAGATAACAATGAAGAAGGGGGAGGGGGAGACAGCGGTAGATGA

mRNA sequence

ATTTGTTCAATAATCTCCAAAGACCCTATAATTAAATAAAACTTTGCACCCACAATTGAAGATTCTACTTTCCCCCCAAAACCAAAAAATAACCCATCAAATCACATTCAAAGCTCTACAAATTATCACATCTCTTCCATTTTGTGTAAGCCACCGTTTCGATTTCCTACTAAATTCTCGTTTGGAAACACAAGGAGATTTTGAAAAGTCTTCACACCATTTTGAACCATAATCTTCAAACCCTAACCTTCACGTTCCTAATCTCATTTCACTGTTCGTCCCTTCGAATCTTCATCGTTCATCTCTTCCGTAAGAAACACCCTTCGAATCTTCATTGAACCTTCAAGAAACATAGTTCCTCCCTTCTTCAAGCATTCGAATCTTCAAAAACTTTTTTGTTCAAATCATTCGTATCTTCAAAAACACCGTTCGTCCCTTTGAATCTTCATCGTTCGTCTCTTCCCTTCGTATCTTTCGTTCCCTTCATCTACTTCAGAAATCCTTAAATTTCTGCTTCGGTTCGTCGTTCCCTTCATCTCATACCTTCGTCTGCTGCAAATTCTTAAAATTTTTTGCCATTCTTCATACGTTCGGCTCAAATCGATGAAAAAGGAGAAGGGAGAAGTCAGAACGAGAAGTGACCGGTTAAGAGCCGTAGGGATCACTGGTTCGAAAAAACCATTGCCAACGGGGATTCAAACTCTGTCAAGTTCTTCCAATGAGGAAAATACTGAAAGTGAAGAAGAGGAACAAGGAGAAGAAGATGAACATGAAGAAGAAGATAAACAAGGAGAAGAAGATAACAATGAAGAAGGGGGAGGGGGAGACAGCGGTAGATGA

Coding sequence (CDS)

ATGAAAAAGGAGAAGGGAGAAGTCAGAACGAGAAGTGACCGGTTAAGAGCCGTAGGGATCACTGGTTCGAAAAAACCATTGCCAACGGGGATTCAAACTCTGTCAAGTTCTTCCAATGAGGAAAATACTGAAAGTGAAGAAGAGGAACAAGGAGAAGAAGATGAACATGAAGAAGAAGATAAACAAGGAGAAGAAGATAACAATGAAGAAGGGGGAGGGGGAGACAGCGGTAGATGA

Protein sequence

MKKEKGEVRTRSDRLRAVGITGSKKPLPTGIQTLSSSSNEENTESEEEEQGEEDEHEEEDKQGEEDNNEEGGGGDSGR
Homology
[Close]
BLAST of MELO3C034843.jh1 vs. NCBI nr
Match: KAA0056158.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.36e-09
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 1   MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 40
           MKK KGEVRTR SDRLRA GITGSKK LPTGIQTLSSSS+E
Sbjct: 76  MKKRKGEVRTRTSDRLRAAGITGSKKRLPTGIQTLSSSSDE 116

[Close]
BLAST of MELO3C034843.jh1 vs. NCBI nr
Match: KAA0033297.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.13e-07
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 40
          MK+ +GE++TR SDRLRA GITGS+K LPTGIQ LSSSS E
Sbjct: 1  MKRGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEE 41

[Close]
BLAST of MELO3C034843.jh1 vs. NCBI nr
Match: TYK02521.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.19e-07
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1   MKKEKGEVRTRS-DRLRAVGITGSKKPLPTGIQTLSSSS 38
           MKKEK +VRTR+ DRLRA GITGS+K LPTGIQTLSSSS
Sbjct: 140 MKKEKRKVRTRTIDRLRAAGITGSEKRLPTGIQTLSSSS 178

[Close]
BLAST of MELO3C034843.jh1 vs. NCBI nr
Match: KAA0067175.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 4.80e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 40
          MKK +GE++TR SDRLRA GITGS+K LPTGIQ LSSSS E
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEE 41

[Close]
BLAST of MELO3C034843.jh1 vs. NCBI nr
Match: TYK23192.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 4.80e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 40
          MKK +GE++TR SDRLRA GITGS+K LPTGIQ LSSSS E
Sbjct: 1  MKKGRGEIKTRISDRLRAAGITGSRKSLPTGIQNLSSSSEE 41

[Close]
BLAST of MELO3C034843.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UM43 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00480 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.61e-10
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 1   MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 40
           MKK KGEVRTR SDRLRA GITGSKK LPTGIQTLSSSS+E
Sbjct: 76  MKKRKGEVRTRTSDRLRAAGITGSKKRLPTGIQTLSSSSDE 116

[Close]
BLAST of MELO3C034843.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SVE9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001080 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.03e-07
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 40
          MK+ +GE++TR SDRLRA GITGS+K LPTGIQ LSSSS E
Sbjct: 1  MKRGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEE 41

[Close]
BLAST of MELO3C034843.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BRZ7 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00530 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.54e-07
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1   MKKEKGEVRTRS-DRLRAVGITGSKKPLPTGIQTLSSSS 38
           MKKEK +VRTR+ DRLRA GITGS+K LPTGIQTLSSSS
Sbjct: 140 MKKEKRKVRTRTIDRLRAAGITGSEKRLPTGIQTLSSSS 178

[Close]
BLAST of MELO3C034843.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VN68 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002520 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.32e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 40
          MKK +GE++TR SDRLRA GITGS+K LPTGIQ LSSSS E
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEE 41

[Close]
BLAST of MELO3C034843.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DHZ2 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002220 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.33e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 40
          MKK +GE++TR SDRLRA GITGS+K LPTGIQ LSSSS E
Sbjct: 1  MKKGRGEIKTRISDRLRAAGITGSRKSLPTGIQNLSSSSEE 41

The following BLAST results are available for this feature:
BLAST of MELO3C034843.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056158.11.36e-0987.80protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0033297.12.13e-0773.17protein Ycf2-like [Cucumis melo var. makuwa][more]
TYK02521.13.19e-0782.05protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0067175.14.80e-0775.61protein Ycf2-like [Cucumis melo var. makuwa][more]
TYK23192.14.80e-0775.61protein Ycf2-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C034843.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034843.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UM436.61e-1087.80Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00... [more]
A0A5A7SVE91.03e-0773.17Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00... [more]
A0A5D3BRZ71.54e-0782.05Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00... [more]
A0A5A7VN682.32e-0775.61Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002... [more]
A0A5D3DHZ22.33e-0775.61Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00... [more]
BLAST of MELO3C034843.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034843.jh1.t1MELO3C034843.jh1.t1mRNA