MELO3C034843 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034843
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein Ycf2-like
Location	chr11: 7403813 .. 7404988 (-)
RNA-Seq Expression	MELO3C034843
Synteny	MELO3C034843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGTTCAATAATCTCCAAAGACCCTATAATTAAATAAAACTTTGCACCCACAATTGAAGATTCTACTTTCCCCCCAAAACCAAAAAATAACCCATCAAATCACATTCAAAGCTCTACAAATTATCACATCTCTTCCATTTTGTGTAAGCCACCGTTTCGATTTCCTACTAAATTCTCGTTTGGAAACACAAGGAGATTTTGAAAAGTCTTCACACCATTTTGAACCATAATCTTCAAACCCTAACCTTCACGTTCCTAATCTCATTTCACTGTTCGTCCCTTCGAATCTTCATCGTTCATCTCTTCCGTAAGAAACACCCTTCGAATCTTCATTGAACCTTCAAGAAACATAGTTCCTCCCTTCTTCAAGCATTCGAATCTTCAAAAACTTTTTTGTTCAAATCATTCGTATCTTCAAAAACACCGTTCGTCCCTTTGAATCTTCATCGTTCGTCTCTTCCCTTCGTATCTTTCGTTCCCTTCATCTACTTCAGAAATCCTTAAATTTCTGCTTCGGTTCGTCGTTCCCTTCATCTCATACCTTCGTCTGCTGCAAATTCTTAAAATTTTTTGCCATTCTTCATACGTTCGGCTCAAATCGGTGAGTTCTTCAAATTCTTCAATGTATTTTCTTCTTTAGATTTCTTCTTTGCATTATAGTTCTTTATTTAACTAGAATTCGTTTAGTTTTTCAGTAGTTTCCAATGTTGTGATGTTTAATGTTCCGATATTTTGAAAATTGAATAATATTTTTTTTCTTTTTAATTTTATGTAATATTTATAAATATATTTGGGGATTTTTTTGTTTATTTAATTATCTATTTCGATTACATAAACAATATAGAAACTGATGTGTCCTTTATTTTAGGAAGAAGAAGAGGGATTTGTTGTATATTTATGAATGTATATTGTTTTTATAAATTGTATAAAATCAAAAGATGAAAAAGGAGAAGGGAGAAGTCAGAACGAGAAGTGACCGGTTAAGAGCCGTAGGGATCACTGGTTCGAAAAAACCATTGCCAACGGGGATTCAAACTCTGTCAAGTTCTTCCAATGAGGTATTAATGTATATTTTTAAGAATTACACATAAATTGTAGATACTTATAACTTTTTGTATGACTAATTATAGCAGAGACCAGAAGATACAATGGTGGAGGGGTCGGAAAGCAAGCG

mRNA sequence

ATTTGTTCAATAATCTCCAAAGACCCTATAATTAAATAAAACTTTGCACCCACAATTGAAGATTCTACTTTCCCCCCAAAACCAAAAAATAACCCATCAAATCACATTCAAAGCTCTACAAATTATCACATCTCTTCCATTTTGTGTAAGCCACCGTTTCGATTTCCTACTAAATTCTCGTTTGGAAACACAAGGAGATTTTGAAAAGTCTTCACACCATTTTGAACCATAATCTTCAAACCCTAACCTTCACGTTCCTAATCTCATTTCACTGTTCGTCCCTTCGAATCTTCATCGTTCATCTCTTCCGTAAGAAACACCCTTCGAATCTTCATTGAACCTTCAAGAAACATAGTTCCTCCCTTCTTCAAGCATTCGAATCTTCAAAAACTTTTTTGTTCAAATCATTCGTATCTTCAAAAACACCGTTCGTCCCTTTGAATCTTCATCGTTCGTCTCTTCCCTTCGTATCTTTCGTTCCCTTCATCTACTTCAGAAATCCTTAAATTTCTGCTTCGGTTCGTCGTTCCCTTCATCTCATACCTTCGTCTGCTGCAAATTCTTAAAATTTTTTGCCATTCTTCATACGTTCGGCTCAAATCGATGAAAAAGGAGAAGGGAGAAGTCAGAACGAGAAGTGACCGGTTAAGAGCCGTAGGGATCACTGGTTCGAAAAAACCATTGCCAACGGGGATTCAAACTCTGTCAAGTTCTTCCAATGAGGTATTAATGTATATTTTTAAGAATTACACATAAATTGTAGATACTTATAACTTTTTGTATGACTAATTATAGCAGAGACCAGAAGATACAATGGTGGAGGGGTCGGAAAGCAAGCG

Coding sequence (CDS)

ATGAAAAAGGAGAAGGGAGAAGTCAGAACGAGAAGTGACCGGTTAAGAGCCGTAGGGATCACTGGTTCGAAAAAACCATTGCCAACGGGGATTCAAACTCTGTCAAGTTCTTCCAATGAGGTATTAATGTATATTTTTAAGAATTACACATAA

Protein sequence

MKKEKGEVRTRSDRLRAVGITGSKKPLPTGIQTLSSSSNEVLMYIFKNYT

Homology

[Close]

BLAST of MELO3C034843 vs. NCBI nr
Match: KAA0048427.1 (hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223.1 hypothetical protein E5676_scaffold600G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNEVLMYIFKNYT 51
          MKK +GEV+TR SD LRA GITGSKK LPTGIQTLSSS +EVLMY+FKNYT
Sbjct: 1  MKKREGEVKTRISDWLRAAGITGSKKRLPTGIQTLSSSYDEVLMYVFKNYT 51

[Close]

BLAST of MELO3C034843 vs. NCBI nr
Match: TYK07943.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNEVLMYIFKNYT 51
          MKKEKGEV+TR SDRLR VGITGSKK    GIQTLSSSS+E+LMY+FKNYT
Sbjct: 1  MKKEKGEVKTRTSDRLRVVGITGSKKRFLMGIQTLSSSSDELLMYVFKNYT 51

[Close]

BLAST of MELO3C034843 vs. NCBI nr
Match: KAA0056158.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 6.8e-08
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNEV 42
           MKK KGEVRTR SDRLRA GITGSKK LPTGIQTLSSSS+EV
Sbjct: 76  MKKRKGEVRTRTSDRLRAAGITGSKKRLPTGIQTLSSSSDEV 117

[Close]

BLAST of MELO3C034843 vs. NCBI nr
Match: TYK02521.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1   MKKEKGEVRTRS-DRLRAVGITGSKKPLPTGIQTLSSSSNEVLMY 45
           MKKEK +VRTR+ DRLRA GITGS+K LPTGIQTLSSSS++VLM+
Sbjct: 140 MKKEKRKVRTRTIDRLRAAGITGSEKRLPTGIQTLSSSSDKVLMF 184

[Close]

BLAST of MELO3C034843 vs. NCBI nr
Match: KAA0067175.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 41
          MKK +GE++TR SDRLRA GITGS+K LPTGIQ LSSSS E
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEE 41

[Close]

BLAST of MELO3C034843 vs. ExPASy TrEMBL
Match: A0A5D3DX05 (DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00010 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNEVLMYIFKNYT 51
          MKK +GEV+TR SD LRA GITGSKK LPTGIQTLSSS +EVLMY+FKNYT
Sbjct: 1  MKKREGEVKTRISDWLRAAGITGSKKRLPTGIQTLSSSYDEVLMYVFKNYT 51

[Close]

BLAST of MELO3C034843 vs. ExPASy TrEMBL
Match: A0A5D3C7R3 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00600 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNEVLMYIFKNYT 51
          MKKEKGEV+TR SDRLR VGITGSKK    GIQTLSSSS+E+LMY+FKNYT
Sbjct: 1  MKKEKGEVKTRTSDRLRVVGITGSKKRFLMGIQTLSSSSDELLMYVFKNYT 51

[Close]

BLAST of MELO3C034843 vs. ExPASy TrEMBL
Match: A0A5A7UM43 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00480 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNEV 42
           MKK KGEVRTR SDRLRA GITGSKK LPTGIQTLSSSS+EV
Sbjct: 76  MKKRKGEVRTRTSDRLRAAGITGSKKRLPTGIQTLSSSSDEV 117

[Close]

BLAST of MELO3C034843 vs. ExPASy TrEMBL
Match: A0A5D3BRZ7 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00530 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1   MKKEKGEVRTRS-DRLRAVGITGSKKPLPTGIQTLSSSSNEVLMY 45
           MKKEK +VRTR+ DRLRA GITGS+K LPTGIQTLSSSS++VLM+
Sbjct: 140 MKKEKRKVRTRTIDRLRAAGITGSEKRLPTGIQTLSSSSDKVLMF 184

[Close]

BLAST of MELO3C034843 vs. ExPASy TrEMBL
Match: A0A5A7U047 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00640 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.0e-06
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MKKEKGEVRTR-SDRLRAVGITGSKKPLPTGIQTLSSSSNE 41
          MKK +GE++TR SDRLRA GITGS+K LPTGIQ LSSSS E
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEE 41

The following BLAST results are available for this feature:

BLAST of MELO3C034843 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048427.1	5.1e-11	80.39	hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223...	[more]
TYK07943.1	5.1e-11	80.39	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0056158.1	6.8e-08	88.10	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK02521.1	3.4e-07	77.78	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0067175.1	1.9e-05	75.61	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034843 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX05	2.4e-11	80.39	DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C7R3	2.4e-11	80.39	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00...	[more]
A0A5A7UM43	3.3e-08	88.10	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00...	[more]
A0A5D3BRZ7	1.6e-07	77.78	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00...	[more]
A0A5A7U047	9.0e-06	75.61	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00...	[more]

BLAST of MELO3C034843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034843.1	MELO3C034843.1	mRNA