MELO3C034805.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034805.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranscription factor bHLH36
Locationchr11: 19690178 .. 19690357 (-)
RNA-Seq ExpressionMELO3C034805.jh1
SyntenyMELO3C034805.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAAGGCGTTGTTGAGTTAGGGAGAGAAAGGGGGAGGCAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCACTTGGATTTATCAAGGTAATTTGTGGGACTGTGCATAAGGGAAGAGATAAACAGAGGGAGAAGAAACGAAAAAAGAAAGATCAA

mRNA sequence

ATGGACGAAGGCGTTGTTGAGTTAGGGAGAGAAAGGGGGAGGCAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCACTTGGATTTATCAAGGTAATTTGTGGGACTGTGCATAAGGGAAGAGATAAACAGAGGGAGAAGAAACGAAAAAAGAAAGATCAA

Coding sequence (CDS)

ATGGACGAAGGCGTTGTTGAGTTAGGGAGAGAAAGGGGGAGGCAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCACTTGGATTTATCAAGGTAATTTGTGGGACTGTGCATAAGGGAAGAGATAAACAGAGGGAGAAGAAACGAAAAAAGAAAGATCAA

Protein sequence

MDEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIKVICGTVHKGRDKQREKKRKKKDQ
Homology
BLAST of MELO3C034805.jh1 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.15e-25
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MDEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIKVICGTVHKGRDKQREKKRKKKDQ 60
          MD+G+VELGRER RQRRQEIGALYMSLRTLLPL FIKVI GT+H+GRDK REKKRKKKDQ
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

BLAST of MELO3C034805.jh1 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 8.28e-25
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1  MDEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIKVICGTVHKGRDKQREKKRKKKDQ 60
          MD+ VVELGRER RQRRQEI ALYM LR LLPL FIKVICGTVH+GRDKQREKKRKKKDQ
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

BLAST of MELO3C034805.jh1 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 4.45e-19
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 1  MDEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIKVICGTVHKGRDKQREKKRKKKDQ 60
          MD+GVV+L RER RQRRQEIGALYM++RTLL L FIKVICG VH+ RDK REKKRKKKDQ
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKKDQ 60

BLAST of MELO3C034805.jh1 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.32e-12
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIKV 38
          MD+GVVELGRER RQRRQEI ALYMSLRTLLPL FIKV
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

BLAST of MELO3C034805.jh1 vs. NCBI nr
Match: XP_022967981.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 50.4 bits (119), Expect = 2.85e-05
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 2   DEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIK 37
           D  +  + RER RQRRQE+GALYMSLRTLLPL FIK
Sbjct: 71  DHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIK 106

BLAST of MELO3C034805.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.04e-25
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MDEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIKVICGTVHKGRDKQREKKRKKKDQ 60
          MD+G+VELGRER RQRRQEIGALYMSLRTLLPL FIKVI GT+H+GRDK REKKRKKKDQ
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

BLAST of MELO3C034805.jh1 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.01e-25
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1  MDEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIKVICGTVHKGRDKQREKKRKKKDQ 60
          MD+ VVELGRER RQRRQEI ALYM LR LLPL FIKVICGTVH+GRDKQREKKRKKKDQ
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

BLAST of MELO3C034805.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.16e-19
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 1  MDEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIKVICGTVHKGRDKQREKKRKKKDQ 60
          MD+GVV+L RER RQRRQEIGALYM++RTLL L FIKVICG VH+ RDK REKKRKKKDQ
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKKDQ 60

BLAST of MELO3C034805.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.61e-12
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIKV 38
          MD+GVVELGRER RQRRQEI ALYMSLRTLLPL FIKV
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

BLAST of MELO3C034805.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HTL2 (transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.38e-05
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 2   DEGVVELGRERGRQRRQEIGALYMSLRTLLPLGFIK 37
           D  +  + RER RQRRQE+GALYMSLRTLLPL FIK
Sbjct: 71  DHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIK 106

BLAST of MELO3C034805.jh1 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 4.5e-04
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 0

Query: 10 RERGRQRRQEIGALYMSLRTLLPLGFIK 38
          RE  RQRRQE+ +LY SLR+LLPL FIK
Sbjct: 7  RETERQRRQEMASLYASLRSLLPLHFIK 34

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK30150.12.15e-2586.67transcription factor bHLH36 [Cucumis melo var. makuwa][more]
KAA0033316.18.28e-2586.67transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri... [more]
KAA0065871.14.45e-1980.00retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p... [more]
KAA0044825.13.32e-1289.47transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri... [more]
XP_022967981.12.85e-0572.22transcription factor bHLH118-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3K51.04e-2586.67Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7STJ54.01e-2586.67Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7VJK92.16e-1980.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TTV01.61e-1289.47Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1HTL21.38e-0572.22transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE... [more]
Match NameE-valueIdentityDescription
AT5G51780.14.5e-0471.43basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034805.jh1.t1MELO3C034805.jh1.t1mRNA