MELO3C034790 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034790
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Calcium-binding EF hand family protein
Location	chr11: 6076876 .. 6077854 (-)
RNA-Seq Expression	MELO3C034790
Synteny	MELO3C034790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAACAGATGGGTAGATCACGGCCAGCCCCGTGACGCCAATGTTGTAGCAATAGCCGATGTTGCTTGTTTCAGAACAGAAATTGTGTATACAATAAGGTTCTTTATTTTTATGTCTATTTACATGTGTTTCTTTAATTTTCTAACATCTAAATAAAAGCTTCATAATGAACACAATTTTTGTCTAGTTGTCAATGGTTGTGGATAAGTTACACGACAAAACTTACTATAATATTGTGACTTACGCTTTTGAATTTACTCATAGTTCGAACATGATATTAGACTAAGAGGTGCTCTAGTAAACAAACCTTAACAATATTGTTCTATTTGTTGGACAATAATCTATGTTAAACAAACCTCAACTAATGTAGAGCTTGAACTAATCTAAGAAAGGAAAGAAAATAAGGGCTAATAGTTCATTTTCAAAATGTTGTTTATCGAATTAGAAAGATAAACTATTTCTTTTCCATTTTAAATTTATAGATGATCAGATTAAGGTAAAAAAAATTGTGAAAATGCAGCTCTGTGGGAGATCTCTATGAATATGATAGGAACTCAAAGCCTCTGTGGAAGAAGCATGTATGAAAAGATAGAGCAGCACAAGATCTTTGATTGATTCCATCGCGGGGTTGCTATATACATAGCTTGAATGGAGATCCTTCCATATCCCTCTTTCTTTTAACTAAGGTACTAAATAGAGAGAAATTCACCTTGCTATTGAGTTATTATGAACCTAAAAGGTTTCTGGATTTCTTGTATTAATCTTCATGTTCTAGATTTTCAGGGTCACATGATGAATGATACCATAGTTTTGAGGGCCTTAAATAGATTATTGATGTCGTGAATTGCAGGCAGATAGTGATGATGATGGACTCCTGACCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTGTTTTTAGTGAAGATGAGATGAATTATTATCCACACCACGATGAATTTTGTTAG

mRNA sequence

ATGAATAACAGATGGGTAGATCACGGCCAGCCCCGTGACGCCAATGTTGTAGCAATAGCCGATGTTGCTTGTTTCAGAACAGAAATTGTGTATACAATAAGCTCTGTGGGAGATCTCTATGAATATGATAGGAACTCAAAGCCTCTGTGGAAGAAGCATGCAGATAGTGATGATGATGGACTCCTGACCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTGTTTTTAGTGAAGATGAGATGAATTATTATCCACACCACGATGAATTTTGTTAG

Coding sequence (CDS)

ATGAATAACAGATGGGTAGATCACGGCCAGCCCCGTGACGCCAATGTTGTAGCAATAGCCGATGTTGCTTGTTTCAGAACAGAAATTGTGTATACAATAAGCTCTGTGGGAGATCTCTATGAATATGATAGGAACTCAAAGCCTCTGTGGAAGAAGCATGCAGATAGTGATGATGATGGACTCCTGACCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTGTTTTTAGTGAAGATGAGATGAATTATTATCCACACCACGATGAATTTTGTTAG

Protein sequence

MNNRWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSDDDGLLTLKDMIENPFVFYSSVFSEDEMNYYPHHDEFC

Homology

[Close]

BLAST of MELO3C034790 vs. NCBI nr
Match: KAA0047927.1 (uncharacterized protein E6C27_scaffold199G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSDDDGLLT 63
           RWVDHGQPRDANV AIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSDDDGLLT
Sbjct: 65  RWVDHGQPRDANVAAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSDDDGLLT 124

Query: 64  LKDMIENPFVFYSSVFSEDEMNYYPHHDEFC 95
           LKDM ENPFVFYSSVFSEDEM+YYPHHDEFC
Sbjct: 125 LKDMTENPFVFYSSVFSEDEMDYYPHHDEFC 155

[Close]

BLAST of MELO3C034790 vs. NCBI nr
Match: TYK19189.1 (uncharacterized protein E5676_scaffold522G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.6e-34
Identity = 80/127 (62.99%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKH---------- 63
           RWVDHGQPRDANV AIADVACFRTEI+    S+GD YEYDRNSKPLWKKH          
Sbjct: 56  RWVDHGQPRDANVAAIADVACFRTEII----SMGDFYEYDRNSKPLWKKHVWKDRAAQDL 115

Query: 64  --------------------------ADSDDDGLLTLKDMIENPFVFYSSVFSEDEMNYY 95
                                     ADSDDDGLLTLKDMIENPFVFYS VFSEDEM+YY
Sbjct: 116 LLIPSRGCYIHSLNGDPSVSLFLLTKADSDDDGLLTLKDMIENPFVFYSPVFSEDEMDYY 175

[Close]

BLAST of MELO3C034790 vs. NCBI nr
Match: TYK29018.1 (uncharacterized protein E5676_scaffold120G001290 [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 7.0e-30
Identity = 73/121 (60.33%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 10  QPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKH---------------- 69
           +P+D  V AIADVACFRTEIV TISSVGDLYEYDRNSKPLW KH                
Sbjct: 74  EPQDHGVAAIADVACFRTEIVSTISSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSR 133

Query: 70  --------------------ADSDDDGLLTLKDMIENPFVFYSSVFSEDEMNYYPHHDEF 95
                                DSDDDG LTLKDMIENPFVFYSSVF+EDEM YYP HDEF
Sbjct: 134 GCYIHSLNGDPSISLFLLTKTDSDDDGFLTLKDMIENPFVFYSSVFTEDEMGYYPRHDEF 193

[Close]

BLAST of MELO3C034790 vs. NCBI nr
Match: XP_031741553.1 (uncharacterized protein LOC101214470 isoform X1 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 8.6e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 244 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 297

[Close]

BLAST of MELO3C034790 vs. NCBI nr
Match: XP_008450401.1 (PREDICTED: uncharacterized protein LOC103492016 isoform X3 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 8.6e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 242 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 295

[Close]

BLAST of MELO3C034790 vs. ExPASy TrEMBL
Match: A0A5A7U137 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold199G00020 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSDDDGLLT 63
           RWVDHGQPRDANV AIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSDDDGLLT
Sbjct: 65  RWVDHGQPRDANVAAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSDDDGLLT 124

Query: 64  LKDMIENPFVFYSSVFSEDEMNYYPHHDEFC 95
           LKDM ENPFVFYSSVFSEDEM+YYPHHDEFC
Sbjct: 125 LKDMTENPFVFYSSVFSEDEMDYYPHHDEFC 155

[Close]

BLAST of MELO3C034790 vs. ExPASy TrEMBL
Match: A0A5D3D6K7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G001250 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.7e-34
Identity = 80/127 (62.99%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKH---------- 63
           RWVDHGQPRDANV AIADVACFRTEI+    S+GD YEYDRNSKPLWKKH          
Sbjct: 56  RWVDHGQPRDANVAAIADVACFRTEII----SMGDFYEYDRNSKPLWKKHVWKDRAAQDL 115

Query: 64  --------------------------ADSDDDGLLTLKDMIENPFVFYSSVFSEDEMNYY 95
                                     ADSDDDGLLTLKDMIENPFVFYS VFSEDEM+YY
Sbjct: 116 LLIPSRGCYIHSLNGDPSVSLFLLTKADSDDDGLLTLKDMIENPFVFYSPVFSEDEMDYY 175

[Close]

BLAST of MELO3C034790 vs. ExPASy TrEMBL
Match: A0A5D3DZY6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001290 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.4e-30
Identity = 73/121 (60.33%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 10  QPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKH---------------- 69
           +P+D  V AIADVACFRTEIV TISSVGDLYEYDRNSKPLW KH                
Sbjct: 74  EPQDHGVAAIADVACFRTEIVSTISSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSR 133

Query: 70  --------------------ADSDDDGLLTLKDMIENPFVFYSSVFSEDEMNYYPHHDEF 95
                                DSDDDG LTLKDMIENPFVFYSSVF+EDEM YYP HDEF
Sbjct: 134 GCYIHSLNGDPSISLFLLTKTDSDDDGFLTLKDMIENPFVFYSSVFTEDEMGYYPRHDEF 193

[Close]

BLAST of MELO3C034790 vs. ExPASy TrEMBL
Match: A0A5D3D5Q8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001050 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.2e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 242 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 295

[Close]

BLAST of MELO3C034790 vs. ExPASy TrEMBL
Match: A0A5A7U9Z2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00460 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.2e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 244 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 297

[Close]

BLAST of MELO3C034790 vs. TAIR 10
Match: AT5G08580.1 (Calcium-binding EF hand family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-06
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 54  ADSDDDGLLTLKDMIENPFVFYSSVFSEDEM-NYYPHHDEF 94
           ADSD D  LTL +MIE+P+VFYS++F ED+  + Y  HDEF
Sbjct: 350 ADSDKDRRLTLAEMIEHPYVFYSAIFDEDDTDDDYGFHDEF 390

The following BLAST results are available for this feature:

BLAST of MELO3C034790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047927.1	1.2e-45	96.70	uncharacterized protein E6C27_scaffold199G00020 [Cucumis melo var. makuwa]	[more]
TYK19189.1	3.6e-34	62.99	uncharacterized protein E5676_scaffold522G001250 [Cucumis melo var. makuwa]	[more]
TYK29018.1	7.0e-30	60.33	uncharacterized protein E5676_scaffold120G001290 [Cucumis melo var. makuwa]	[more]
XP_031741553.1	8.6e-20	90.74	uncharacterized protein LOC101214470 isoform X1 [Cucumis sativus]	[more]
XP_008450401.1	8.6e-20	90.74	PREDICTED: uncharacterized protein LOC103492016 isoform X3 [Cucumis melo]	[more]

BLAST of MELO3C034790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U137	5.8e-46	96.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D6K7	1.7e-34	62.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DZY6	3.4e-30	60.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D5Q8	4.2e-20	90.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9Z2	4.2e-20	90.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C034790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08580.1	2.6e-06	58.54	Calcium-binding EF hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36893	OS01G0275950 PROTEIN	coord: 3..58
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 55..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034790.1	MELO3C034790.1	mRNA