MELO3C034771.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034771.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPPM-type phosphatase domain-containing protein
Locationchr11: 7155127 .. 7156665 (+)
RNA-Seq ExpressionMELO3C034771.jh1
SyntenyMELO3C034771.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTATAATTCAGGCATCCTTCTATATGAAATGCTTTATGGATACAAACCCTTTTAAGGGGAAGACAAGGCAAAAGACATTTGCCAACATTCTCCATAAGGATCTTAAATTTCCGAGAAGTATATTGGTAAATACATTTTAAAGTTATCTGAGCTCATTAAATCTCTTTTTACTCACTATTAAATATATCAATGTTTAGAAAGTCTTTTATTCCTTATGTATATACAAATCTAAGTTGTGAGGCCTTTCAAATGTTGTGTTTCAGGCTAGTCTCAATGCAAAGCAGTTAATTTTTAGGTTATTGCATAGAGACCCCAAAAATCGATTAGGTTCTCGAGAAGGAGCCGGTGAAATCAAATGACATCCTTTCTTCTGAGGTGTTAATTGGGCGCTCGTCCGTTGCAAGGTAAACTCAAAACTCAATCTCAAGATTGTATGTCAATTGGGCGCTCTTCTCCCCACTATCTTGCCGAGATTGTATGTCTCTCCCTCCTGAACTTGCAATGGACCAACTGCAGGTTTTCTTATCATAATCTGGCTACTTTTTGGATTTGTGGTAAGAGTCTTATTTATTAAGAAAATTAAATTACATTTTCTTAATGGTATTAGACATATTCTTTGGTACATTTATTTCAGAAAATTAATCATTGGTTTGCACCAGGTCAATACATCTAATGTTATCATCTTGGAAGGTATTTTGTTTAATGTTTCTCAAATCATGTGGGTGAAATTAGATATGTGAATGCTGAAAGGAAGAGTTGAGTAGTGATTTCTCATTTAAGCTTTGCAAAAATAATGTTTTGATTCAATTTTATGTTCATGACTTAATTCTCAGTTAAGCTGCAGATATTGTCTTTCTCAAATGCGTTATTTCATAGGGGTTCAAGTTTATGTTCACAACTTCATGGAAGGAGAAAGAATGATGAGAATCTTCAACTACAAAACCCGAAAGCATAAATCTGTAATGTTTTTTCTTCTCAACTTTTAGGTTTTCCATTTGCTTTAGCCTATGTTCTCTTAAAGAAGTTATTGATTTTGTTTAAAAAAAAATCTTTTTTTTTTTAAAAAAGGCATCTAAGTACTATGACATCCCATGTGTTCTCTCTTATTCTTTTGATAGCTATGTGAGCAACCATCCACTAATTCTTAAAGTATGTTGTAAGCGTCCAATACTTCATAGAGATCCTACATTTTGTGTCTATTTCAAAGACATAATTCTAGTTCAAAGGTCTTAGACTTAAAAGTTAGAGTTCTTAGTTTTAATGTTGTTCTCATCTTGTTTGTAGATTTCAAGGAGTTGATGATAACAATCGTGAAACTTTGAGTTTGCAGTTATCTAAGAGTGTGGAGCTTGGAGGAGGGTGATGTCCTTGTTTCTTATTATTACATATACTTTGTGTTTTATGATTAAGACTGATGATCATAACATGTTTTGTAATATGAATAAGAACGATGTTCCTAAGTTGTAAGTATGTAATGACCAACTATATGTATATTCAAGGATATATATGCAATTTATTAGTTCTTTGATTGAAA

mRNA sequence

ATGGTTTATAATTCAGGCATCCTTCTATATGAAATGCTTTATGGATACAAACCCTTTTAAGGGGAAGACAAGGCAAAAGACATTTGCCAACATTCTCCATAAGGATCTTAAATTTCCGAGAAGTATATTGGTTCTCGAGAAGGAGCCGGTGAAATCAAATGACATCCTTTCTTCTGAGGTGTTAATTGGGCGCTCGTCCGTTGCAAGAAAATTAATCATTGGTTTGCACCAGGTCAATACATCTAATGTTATCATCTTGGAAGGGGTTCAAGTTTATGTTCACAACTTCATGGAAGGAGAAAGAATGATGAGAATCTTCAACTACAAAACCCGAAAGCATAAATCTGTAATATTTCAAGGAGTTGATGATAACAATCGTGAAACTTTGAGTTTGCAGTTATCTAAGAGTGTGGAGCTTGGAGGAGGGTGATGTCCTTGTTTCTTATTATTACATATACTTTGTGTTTTATGATTAAGACTGATGATCATAACATGTTTTGTAATATGAATAAGAACGATGTTCCTAAGTTGTAAGTATGTAATGACCAACTATATGTATATTCAAGGATATATATGCAATTTATTAGTTCTTTGATTGAAA

Coding sequence (CDS)

ATGAAATGCTTTATGGATACAAACCCTTTTAAGGGGAAGACAAGGCAAAAGACATTTGCCAACATTCTCCATAAGGATCTTAAATTTCCGAGAAGTATATTGGTTCTCGAGAAGGAGCCGGTGAAATCAAATGACATCCTTTCTTCTGAGGTGTTAATTGGGCGCTCGTCCGTTGCAAGAAAATTAATCATTGGTTTGCACCAGGTCAATACATCTAATGTTATCATCTTGGAAGGGGTTCAAGTTTATGTTCACAACTTCATGGAAGGAGAAAGAATGATGAGAATCTTCAACTACAAAACCCGAAAGCATAAATCTGTAATATTTCAAGGAGTTGATGATAACAATCGTGAAACTTTGAGTTTGCAGTTATCTAAGAGTGTGGAGCTTGGAGGAGGGTGA

Protein sequence

MKCFMDTNPFKGKTRQKTFANILHKDLKFPRSILVLEKEPVKSNDILSSEVLIGRSSVARKLIIGLHQVNTSNVIILEGVQVYVHNFMEGERMMRIFNYKTRKHKSVIFQGVDDNNRETLSLQLSKSVELGGG
Homology
[Close]
BLAST of MELO3C034771.jh1 vs. NCBI nr
Match: KAA0042868.1 (putative protein phosphatase 2C 33 [Cucumis melo var. makuwa] >TYK05271.1 putative protein phosphatase 2C 33 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 1.22e-24
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 77  LEGVQVYVHNFMEGERMMRIFNYKTRKHKSVIFQGVDDNNRETLSLQLSKSVELGGG 133
           ++ VQVYVHNFMEGERMMRIFNYKTRKHK VIFQGVDDNNRETLSL+LS SV LGGG
Sbjct: 141 MKRVQVYVHNFMEGERMMRIFNYKTRKHKYVIFQGVDDNNRETLSLELSLSVVLGGG 197

[Close]
BLAST of MELO3C034771.jh1 vs. NCBI nr
Match: KAA0036721.1 (alpha-mannosidase [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 6.01e-09
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 69  VNTSNVIILEGVQVYVHNFMEGERMMRIFNYKT 101
           VNTS+VIILEG+QVYVH+FMEGE+MMRIFNYKT
Sbjct: 221 VNTSDVIILEGLQVYVHDFMEGEKMMRIFNYKT 253

[Close]
BLAST of MELO3C034771.jh1 vs. NCBI nr
Match: AML78047.1 (putative LOV domain-containing protein [Cercidiphyllum japonicum])

HSP 1 Score: 57.4 bits (137), Expect = 1.84e-06
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSILV 35
           PF+GKTRQKTFANILHKDLKFPRSILV
Sbjct: 904 PFRGKTRQKTFANILHKDLKFPRSILV 930

[Close]
BLAST of MELO3C034771.jh1 vs. NCBI nr
Match: AML77050.1 (putative LOV domain-containing protein [Asparagus densiflorus])

HSP 1 Score: 56.2 bits (134), Expect = 4.61e-06
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 4   FMDTNPFKGKTRQKTFANILHKDLKFPRSILVLEK 38
           F    PF+GKTRQKTFANILHKDLKFPRSI V ++
Sbjct: 818 FYGYTPFRGKTRQKTFANILHKDLKFPRSISVSDQ 852

[Close]
BLAST of MELO3C034771.jh1 vs. NCBI nr
Match: XP_020244197.1 (LOW QUALITY PROTEIN: phototropin-1A-like [Asparagus officinalis])

HSP 1 Score: 55.8 bits (133), Expect = 6.28e-06
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 4   FMDTNPFKGKTRQKTFANILHKDLKFPRSILVLEK 38
           F    PF+GKTRQKTFANILHKDLKFP SILV ++
Sbjct: 813 FYGYTPFRGKTRQKTFANILHKDLKFPGSILVSDQ 847

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy Swiss-Prot
Match: Q2QYY8 (Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSILV 36
           PF+GKTRQ+TFANILHKD++FP SI V
Sbjct: 820 PFRGKTRQRTFANILHKDIRFPASISV 846

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy Swiss-Prot
Match: Q2RBR1 (Phototropin-1B OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1B PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSILV 36
           PF+GKTRQ+TFANILHKD++FP SI V
Sbjct: 820 PFRGKTRQRTFANILHKDIRFPASISV 846

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy Swiss-Prot
Match: P93025 (Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 8.8e-05
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSILV 36
           PF+GK RQKTFANILHKDL FP SI V
Sbjct: 803 PFRGKNRQKTFANILHKDLTFPSSIPV 829

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy Swiss-Prot
Match: O48963 (Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSI 34
           PF+GKTRQKTF N+L KDLKFP SI
Sbjct: 891 PFRGKTRQKTFTNVLQKDLKFPASI 915

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy Swiss-Prot
Match: Q9ST27 (Phototropin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT2 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.7e-04
Identity = 30/67 (44.78%), Postives = 35/67 (52.24%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSILVLEKEPVKSNDILSSEVLIGRSSVARKLIIGLHQ 68
           PF+GK R+KTF NILHKDL FP SI V                    S  A++LI GL Q
Sbjct: 802 PFRGKNRKKTFYNILHKDLTFPSSIPV--------------------SLAAKQLIHGLLQ 848

Query: 69  VNTSNVI 76
            + SN I
Sbjct: 862 RDPSNRI 848

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C038 (PPM-type phosphatase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00880 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 5.92e-25
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 77  LEGVQVYVHNFMEGERMMRIFNYKTRKHKSVIFQGVDDNNRETLSLQLSKSVELGGG 133
           ++ VQVYVHNFMEGERMMRIFNYKTRKHK VIFQGVDDNNRETLSL+LS SV LGGG
Sbjct: 141 MKRVQVYVHNFMEGERMMRIFNYKTRKHKYVIFQGVDDNNRETLSLELSLSVVLGGG 197

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T589 (Alpha-mannosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1244G00050 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.91e-09
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 69  VNTSNVIILEGVQVYVHNFMEGERMMRIFNYKT 101
           VNTS+VIILEG+QVYVH+FMEGE+MMRIFNYKT
Sbjct: 221 VNTSDVIILEGLQVYVHDFMEGEKMMRIFNYKT 253

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy TrEMBL
Match: A0A126WZZ5 (Putative LOV domain-containing protein OS=Cercidiphyllum japonicum OX=13413 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.89e-07
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSILV 35
           PF+GKTRQKTFANILHKDLKFPRSILV
Sbjct: 904 PFRGKTRQKTFANILHKDLKFPRSILV 930

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy TrEMBL
Match: A0A126WYA8 (Putative LOV domain-containing protein OS=Asparagus densiflorus OX=272853 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.23e-06
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 4   FMDTNPFKGKTRQKTFANILHKDLKFPRSILVLEK 38
           F    PF+GKTRQKTFANILHKDLKFPRSI V ++
Sbjct: 818 FYGYTPFRGKTRQKTFANILHKDLKFPRSISVSDQ 852

[Close]
BLAST of MELO3C034771.jh1 vs. ExPASy TrEMBL
Match: A0A126X021 (Putative LOV domain-containing protein OS=Myristica fragrans OX=51089 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.06e-06
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 4   FMDTNPFKGKTRQKTFANILHKDLKFPRSILV 35
           F    PF+GKTRQKTFANILHKDLKFPRSI V
Sbjct: 886 FYGYTPFRGKTRQKTFANILHKDLKFPRSISV 917

[Close]
BLAST of MELO3C034771.jh1 vs. TAIR 10
Match: AT5G58140.2 (phototropin 2 )

HSP 1 Score: 48.1 bits (113), Expect = 6.2e-06
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSILV 36
           PF+GK RQKTFANILHKDL FP SI V
Sbjct: 803 PFRGKNRQKTFANILHKDLTFPSSIPV 829

[Close]
BLAST of MELO3C034771.jh1 vs. TAIR 10
Match: AT5G58140.3 (phototropin 2 )

HSP 1 Score: 48.1 bits (113), Expect = 6.2e-06
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSILV 36
           PF+GK RQKTFANILHKDL FP SI V
Sbjct: 803 PFRGKNRQKTFANILHKDLTFPSSIPV 829

[Close]
BLAST of MELO3C034771.jh1 vs. TAIR 10
Match: AT5G58140.1 (phototropin 2 )

HSP 1 Score: 48.1 bits (113), Expect = 6.2e-06
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSILV 36
           PF+GK RQKTFANILHKDL FP SI V
Sbjct: 803 PFRGKNRQKTFANILHKDLTFPSSIPV 829

[Close]
BLAST of MELO3C034771.jh1 vs. TAIR 10
Match: AT3G45780.1 (phototropin 1 )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSI 34
           PF+GKTRQKTF N+L KDLKFP SI
Sbjct: 891 PFRGKTRQKTFTNVLQKDLKFPASI 915

[Close]
BLAST of MELO3C034771.jh1 vs. TAIR 10
Match: AT3G45780.2 (phototropin 1 )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 9   PFKGKTRQKTFANILHKDLKFPRSI 34
           PF+GKTRQKTF N+L KDLKFP SI
Sbjct: 891 PFRGKTRQKTFTNVLQKDLKFPASI 915

The following BLAST results are available for this feature:
BLAST of MELO3C034771.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042868.11.22e-2487.72putative protein phosphatase 2C 33 [Cucumis melo var. makuwa] >TYK05271.1 putati... [more]
KAA0036721.16.01e-0987.88alpha-mannosidase [Cucumis melo var. makuwa][more]
AML78047.11.84e-0696.30putative LOV domain-containing protein [Cercidiphyllum japonicum][more]
AML77050.14.61e-0674.29putative LOV domain-containing protein [Asparagus densiflorus][more]
XP_020244197.16.28e-0674.29LOW QUALITY PROTEIN: phototropin-1A-like [Asparagus officinalis][more]
BLAST of MELO3C034771.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QYY83.0e-0577.78Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2[more]
Q2RBR13.0e-0577.78Phototropin-1B OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1B PE=1 SV=2[more]
P930258.8e-0581.48Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2[more]
O489632.0e-0480.00Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1[more]
Q9ST279.7e-0444.78Phototropin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT2 PE=1 SV=1[more]
BLAST of MELO3C034771.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C0385.92e-2587.72PPM-type phosphatase domain-containing protein OS=Cucumis melo var. makuwa OX=11... [more]
A0A5A7T5892.91e-0987.88Alpha-mannosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1244G0... [more]
A0A126WZZ58.89e-0796.30Putative LOV domain-containing protein OS=Cercidiphyllum japonicum OX=13413 PE=2... [more]
A0A126WYA82.23e-0674.29Putative LOV domain-containing protein OS=Asparagus densiflorus OX=272853 PE=2 S... [more]
A0A126X0213.06e-0681.25Putative LOV domain-containing protein OS=Myristica fragrans OX=51089 PE=2 SV=1[more]
BLAST of MELO3C034771.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58140.26.2e-0681.48phototropin 2 [more]
AT5G58140.36.2e-0681.48phototropin 2 [more]
AT5G58140.16.2e-0681.48phototropin 2 [more]
AT3G45780.11.4e-0580.00phototropin 1 [more]
AT3G45780.21.4e-0580.00phototropin 1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034771.jh1.t1MELO3C034771.jh1.t1mRNA