MELO3C034718 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034718
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag/pol protein
Location	chr11: 12660465 .. 12660723 (+)
RNA-Seq Expression	MELO3C034718
Synteny	MELO3C034718

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAAGGAGAAGTAAGTGGAAGCAAATGTTGGTACCACAAAGAAAGAGTTAGTAGGAGGATCGTCCTCTAAGACTAAAGTTGGACTTTCATAAATGAAAAAGAAGGGAAAGGGGAAGACTCCTAAGAAAAGTAAGGGAAAGAAAGTTGCGAAAGATAAATGTTACCACTACAACGAAAATAGACATTGGTTGAGAAATTGTCCAAAGTACCTAGTGGAATATGATACTTCAACATGAATACTAGATTCAAGAAACT

mRNA sequence

ATGAGTAAGGAGAAGTAAGTGGAAGCAAATGTTGGTACCACAAAGAAAGAGTTAGTAGGAGGATCGTCCTCTAAGACTAAAGTTGGACTTTCATAAATGAAAAAGAAGGGAAAGGGGAAGACTCCTAAGAAAAGTAAGGGAAAGAAAGTTGCGAAAGATAAATGTTACCACTACAACGAAAATAGACATTGGTTGAGAAATTGTCCAAAGTACCTAGTGGAATATGATACTTCAACATGAATACTAGATTCAAGAAACT

Coding sequence (CDS)

ATGAAAAAGAAGGGAAAGGGGAAGACTCCTAAGAAAAGTAAGGGAAAGAAAGTTGCGAAAGATAAATGTTACCACTACAACGAAAATAGACATTGGTTGAGAAATTGTCCAAAGTACCTAGTGGAATATGATACTTCAACATGA

Protein sequence

MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVEYDTST

Homology

[Close]

BLAST of MELO3C034718 vs. NCBI nr
Match: KAA0047525.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK26494.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1   MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
           MKKK KGKTPK SKGKKVAKDKCYH NE+RHWLRNCPKYL++
Sbjct: 79  MKKKRKGKTPKNSKGKKVAKDKCYHCNEDRHWLRNCPKYLIK 120

[Close]

BLAST of MELO3C034718 vs. NCBI nr
Match: KAA0035756.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 5.3e-10
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1   MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
           +KKKGKGKTPK SKGKKVAK KCYH NE  HWLRNCPKYL E
Sbjct: 103 IKKKGKGKTPKNSKGKKVAKGKCYHCNEEGHWLRNCPKYLAE 144

[Close]

BLAST of MELO3C034718 vs. NCBI nr
Match: KAA0047411.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-10
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1   MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
           MKKK KGKTPK SKGKKVAK KCYH NE+ HWLRNCPKYL E
Sbjct: 581 MKKKRKGKTPKNSKGKKVAKSKCYHCNEDGHWLRNCPKYLAE 622

[Close]

BLAST of MELO3C034718 vs. NCBI nr
Match: TYK29862.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1   MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
           +KKKGKGKTPK SKGKKVAK KCYH NE+ HWLRNCP+YL E
Sbjct: 103 IKKKGKGKTPKNSKGKKVAKGKCYHCNEDGHWLRNCPEYLAE 144

[Close]

BLAST of MELO3C034718 vs. NCBI nr
Match: KAA0066493.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK06148.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1  MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
          MKKKGKGKTPK +KGKKV KDKCY YN+N HW+RNC KYL E
Sbjct: 1  MKKKGKGKTPKNNKGKKVTKDKCYPYNQNGHWIRNCLKYLAE 42

[Close]

BLAST of MELO3C034718 vs. ExPASy TrEMBL
Match: A0A5A7U1L7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00660 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-11
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1   MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
           MKKK KGKTPK SKGKKVAKDKCYH NE+RHWLRNCPKYL++
Sbjct: 79  MKKKRKGKTPKNSKGKKVAKDKCYHCNEDRHWLRNCPKYLIK 120

[Close]

BLAST of MELO3C034718 vs. ExPASy TrEMBL
Match: A0A5A7T0L9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00290 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1   MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
           +KKKGKGKTPK SKGKKVAK KCYH NE  HWLRNCPKYL E
Sbjct: 103 IKKKGKGKTPKNSKGKKVAKGKCYHCNEEGHWLRNCPKYLAE 144

[Close]

BLAST of MELO3C034718 vs. ExPASy TrEMBL
Match: A0A5D3CUK8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00690 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.3e-10
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1   MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
           MKKK KGKTPK SKGKKVAK KCYH NE+ HWLRNCPKYL E
Sbjct: 581 MKKKRKGKTPKNSKGKKVAKSKCYHCNEDGHWLRNCPKYLAE 622

[Close]

BLAST of MELO3C034718 vs. ExPASy TrEMBL
Match: A0A5D3E1U5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001090 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.7e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1   MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
           +KKKGKGKTPK SKGKKVAK KCYH NE+ HWLRNCP+YL E
Sbjct: 103 IKKKGKGKTPKNSKGKKVAKGKCYHCNEDGHWLRNCPEYLAE 144

[Close]

BLAST of MELO3C034718 vs. ExPASy TrEMBL
Match: A0A5A7VEM2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00510 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1  MKKKGKGKTPKKSKGKKVAKDKCYHYNENRHWLRNCPKYLVE 43
          MKKKGKGKTPK +KGKKV KDKCY YN+N HW+RNC KYL E
Sbjct: 1  MKKKGKGKTPKNNKGKKVTKDKCYPYNQNGHWIRNCLKYLAE 42

The following BLAST results are available for this feature:

BLAST of MELO3C034718 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047525.1	3.6e-11	85.71	gag/pol protein [Cucumis melo var. makuwa] >TYK26494.1 gag/pol protein [Cucumis ...	[more]
KAA0035756.1	5.3e-10	83.33	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0047411.1	9.0e-10	83.33	gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis ...	[more]
TYK29862.1	1.2e-09	80.95	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0066493.1	2.6e-09	78.57	gag/pol protein [Cucumis melo var. makuwa] >TYK06148.1 gag/pol protein [Cucumis ...	[more]

BLAST of MELO3C034718 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1L7	1.8e-11	85.71	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G0066...	[more]
A0A5A7T0L9	2.5e-10	83.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0029...	[more]
A0A5D3CUK8	4.3e-10	83.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0069...	[more]
A0A5D3E1U5	5.7e-10	80.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G0010...	[more]
A0A5A7VEM2	1.3e-09	78.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G0051...	[more]

BLAST of MELO3C034718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 1..42 e-value: 6.4E-7 score: 31.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 4..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034718.1	MELO3C034718.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding