MELO3C034712 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034712
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like
Location	chr11: 12040242 .. 12042015 (-)
RNA-Seq Expression	MELO3C034712
Synteny	MELO3C034712

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGAATCAAGACTGTTGTAAAAAAAAATAAAAAAATCTATACATATGGAAGTTCGGGTTAAAACATAAGAGAGAAATTGAAAACTACCTTAAAACCCTAATTAGTTTCAATCAAACATATTAGAACGTACAATATTCAATCCCAAGAAAACCATTGTAGAAAACCCCCCTTATACCCAAAGCAGGGTTTTAGCTTCTTCCCCTCAGCAGCCAGCCAAGAAGTAAGAGTTGGTTCTCTCTTGTTCATATTCCGAAACCAAGAAGAACAACCTTCAGAATCTATCATTTCTTCTCGTAATCAATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGGTCATTCTCTGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCATCAACCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCCTACTTTCAGGTTCGTTGCTTAATGCTTTTGCAACCGTTTTAAGTGCGAAAAGCTTCTGAATCTAGAGCTTTTTGGGTTTTTTTTTTGTTCTCACTAAAAGTAGAGCAACGAAAACAGTGTTCAATCTTCATCTTTATTTCTCTCTTCAGCGTTTTAGTCGTAAAACGTTTCAGTAAAATAACGTTATCTATTTTGCTTGAAGGTGTGCGCCTGTGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTAATGACTTCCATGCTCTCTATCTCGCGCCATAGCTGCGGTTGGCTCCCCGAAGGTGCATAACTGATAATTTAATTCTTTACTTTCTTGACCTGTTGTGAGCTACATCGAAAGAGAGGACAATATGATGTATTTGTATAGTTTAGAATTTAGACCATATCCATAATTTCAGAATGACTTCTTCCGTGGACAAGAAAGAGTGGATAATTTTCTGGAAGTTGATTTTCTTTTTGCATTTGTTTTTCGTTGGATGAATTTTAGCTTTATAATTTTTTCATGAATCAGGAAAAATAGAGTTTGAGTGGGACTAATAATCAACTATATTTTGAAATAGTGATATCTATATTTAGGTTTAGGGGTCATATTAGCCACAGTGATCTGATGCTTTTGGCGGATGAAATATCTATGCTTGTAATCTATGATTTGGGTAGTTAATGTGTTTGAATCATAAGAAACTACACCATGAAAAGCTTTCTTTTGGCTTAATTTAAGTACTGATGTGTATAAATATTTCAGTAACTTATAAACTTTCATAAGCATTTTATGTGTACATAAATTTGAATGTATTGCGCTAGTTTTGTGATCCCTTTGTTAGACCCCAGTCCTCCAAACTTATAAAAGAAAGGGCAGGAAGGGAAATTCATAGAATAATTCAAAGGGAGAGCTGATGGGAGAGGAAAGAAGCACCGGACAGCCCGCCTTGTATGTGGGTATAATTATAAATAGGGAATGTATTGGGATTGAGGGATTAGGTCAGGATTTTGGTGAAAGTTGCTGTAGGCTTTTTAGGAGAGGTTTCCAGCCTTCTCGAAGGAGCTGGCTTTATTATTTCTTATTACTTTGTTGCATTTACTTTCTGTTCATCATGTGATCACAGTTGGTTTGTTGAACATTTTGGTTATTACATCAATATTACAATAGAGTACTGTCTCTGTTTTGTCATTGTTGGGATTTTCTAAGTTTTAGGTTGAGAATCTTAACAAATTGGTATTAGAGCTTCAACATCCTGGGGCAACACGATCTATAGATAAAAAAACAACTCATCGAAAGAATGAAGTCTAG

mRNA sequence

ATTTTGAATCAAGACTGTTGTAAAAAAAAATAAAAAAATCTATACATATGGAAGTTCGGGTTAAAACATAAGAGAGAAATTGAAAACTACCTTAAAACCCTAATTAGTTTCAATCAAACATATTAGAACGTACAATATTCAATCCCAAGAAAACCATTGTAGAAAACCCCCCTTATACCCAAAGCAGGGTTTTAGCTTCTTCCCCTCAGCAGCCAGCCAAGAAGTAAGAGTTGGTTCTCTCTTGTTCATATTCCGAAACCAAGAAGAACAACCTTCAGAATCTATCATTTCTTCTCGTAATCAATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGGTCATTCTCTGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCATCAACCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCCTACTTTCAGGTGTGCGCCTGTGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTAATGACTTCCATGCTCTCTATCTCGCGCCATAGCTGCGGTTGGCTCCCCGAAGGGAGAGCTGATGGGAGAGGAAAGAAGCACCGGACAGCCCGCCTTGTTGAGAATCTTAACAAATTGGTATTAGAGCTTCAACATCCTGGGGCAACACGATCTATAGATAAAAAAACAACTCATCGAAAGAATGAAGTCTAG

Coding sequence (CDS)

ATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGGTCATTCTCTGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCATCAACCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCCTACTTTCAGGTGTGCGCCTGTGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTAATGACTTCCATGCTCTCTATCTCGCGCCATAGCTGCGGTTGGCTCCCCGAAGGGAGAGCTGATGGGAGAGGAAAGAAGCACCGGACAGCCCGCCTTGTTGAGAATCTTAACAAATTGGTATTAGAGCTTCAACATCCTGGGGCAACACGATCTATAGATAAAAAAACAACTCATCGAAAGAATGAAGTCTAG

Protein sequence

MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLESMMPFHSVSSSALMTSMLSISRHSCGWLPEGRADGRGKKHRTARLVENLNKLVLELQHPGATRSIDKKTTHRKNEV

Homology

[Close]

BLAST of MELO3C034712 vs. NCBI nr
Match: XP_016901881.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGR 93
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEGR
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGR 92

[Close]

BLAST of MELO3C034712 vs. NCBI nr
Match: XP_016901879.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 5.7e-41
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGR 93
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEG+
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGK 92

[Close]

BLAST of MELO3C034712 vs. NCBI nr
Match: TYJ97628.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 7.5e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 92
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of MELO3C034712 vs. NCBI nr
Match: XP_016901880.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 2.2e-40
Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGRADGR 97
          SMMPFHSVSSSALMTSMLSISRHSCGWLPE   D +
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDDK 96

[Close]

BLAST of MELO3C034712 vs. NCBI nr
Match: KAA0053231.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 3.7e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 91
          SMMPFHSVSSSALMTSMLSISRHSCGWLPE
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 90

[Close]

BLAST of MELO3C034712 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-06
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 5  GARSAFRSFSGSARRAAAHIGSQPKPSSTSP--FR-MATNKPLSHPTFRCAPVMSFCLES 64
          GARS  R  + S+R AAA  G     + ++P  FR  A   PL  P  R    +SFC+ES
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSP-LRNPVELSFCVES 68

Query: 65 MMPFHSVSSSALMTSMLSISRHSCGWLPEGRAD 95
          ++P+HS ++SALMTS LSIS  + GWL +   D
Sbjct: 69 LLPYHSATASALMTSKLSISGQTYGWLSDACND 98

[Close]

BLAST of MELO3C034712 vs. ExPASy TrEMBL
Match: A0A1S4E0X5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGR 93
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEGR
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGR 92

[Close]

BLAST of MELO3C034712 vs. ExPASy TrEMBL
Match: A0A1S4E0Y3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.8e-41
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGR 93
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEG+
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGK 92

[Close]

BLAST of MELO3C034712 vs. ExPASy TrEMBL
Match: A0A5D3BHH0 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00120 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.6e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 92
          SMMPFHSVSSSALMTSMLSISRHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of MELO3C034712 vs. ExPASy TrEMBL
Match: A0A1S4E1L9 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGRADGR 97
          SMMPFHSVSSSALMTSMLSISRHSCGWLPE   D +
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDDK 96

[Close]

BLAST of MELO3C034712 vs. ExPASy TrEMBL
Match: A0A5A7UI59 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00160 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.8e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60
          MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 91
          SMMPFHSVSSSALMTSMLSISRHSCGWLPE
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 90

[Close]

BLAST of MELO3C034712 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-10
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 6  ARSAFRSFSGSARRAAAHIGSQPKP---SSTSPFRMATNKPLSHPTFRCAPVMSFCLESM 65
          ARS FRS +  A   A    + PKP   S+ + FRM    PL++  FR    +S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSVSSSALMTSMLSISRHSCGWLPEGRADGR 97
          +P+H+ ++SAL+ SMLS+SR   GW+ +G  + R
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]

BLAST of MELO3C034712 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-10
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 6  ARSAFRSFSGSARRAAAHIGSQPKP---SSTSPFRMATNKPLSHPTFRCAPVMSFCLESM 65
          ARS FRS +  A   A    + PKP   S+ + FRM    PL++  FR    +S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSVSSSALMTSMLSISRHSCGWLPEGRADGR 97
          +P+H+ ++SAL+ SMLS+SR   GW+ +G  + R
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]

BLAST of MELO3C034712 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-10
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 6  ARSAFRSFSGSARRAAAHIGSQPKP---SSTSPFRMATNKPLSHPTFRCAPVMSFCLESM 65
          ARS FRS +  A   A    + PKP   S+ + FRM    PL++  FR    +S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSVSSSALMTSMLSISRHSCGWLPEGRADGR 97
          +P+H+ ++SAL+ SMLS+SR   GW+ +G  + R
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]

BLAST of MELO3C034712 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-09
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 6  ARSAFRSFSGSARRAAAHIGSQPKP---SSTSPFRMATNKPLSHPTFRCAPVMSFCLESM 65
          ARS FRS +  A   A    + PKP   S+ + FRM    PL++  FR    +S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSVSSSALMTSMLSISRHSCGWL 89
          +P+H+ ++SAL+ SMLS+SR   GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

[Close]

BLAST of MELO3C034712 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). )

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-09
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 6  ARSAFRSFSGSARRAAAHIGSQPKP---SSTSPFRMATNKPLSHPTFRCAPVMSFCLESM 65
          ARS FRS +  A   A    + PKP   S+ + FRM    PL++  FR    +S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSVSSSALMTSMLSISRHSCGWL 89
          +P+H+ ++SAL+ SMLS+SR   GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

The following BLAST results are available for this feature:

BLAST of MELO3C034712 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901881.1	2.6e-41	100.00	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
XP_016901879.1	5.7e-41	98.91	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
TYJ97628.1	7.5e-41	100.00	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]	[more]
XP_016901880.1	2.2e-40	94.79	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
KAA0053231.1	3.7e-40	100.00	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034712 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	2.8e-06	44.09	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of MELO3C034712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0X5	1.2e-41	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]
A0A1S4E0Y3	2.8e-41	98.91	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A5D3BHH0	3.6e-41	100.00	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4E1L9	1.1e-40	94.79	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A5A7UI59	1.8e-40	100.00	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]

BLAST of MELO3C034712 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28395.2	4.3e-10	40.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.1	4.3e-10	40.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.3	4.3e-10	40.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.4	2.8e-09	41.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.5	2.8e-09	41.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..41
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..91
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034712.1	MELO3C034712.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy