MELO3C034692 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034692
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PMD domain-containing protein
Location	chr10: 22757037 .. 22757487 (+)
RNA-Seq Expression	MELO3C034692
Synteny	MELO3C034692

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTTGCAGAACTTGAAATCAAGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGCTGGTTGTGCCGTTTCGTATTTCCTCAGAAATGATCGTTTCTTTGTCTTGAAGTATTTAGGGCTGCAAGCCTAATGGTCGTTGGCACTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATACCATGGGCTAGGTCTGATAACCAAAGCCTCCAATCCGATAGAACGCATGGACGTTCACTTTCCCATGCATTACGTCCATGACTGGTTAACCCATTATTTTGGCACACATTATCCACTTCCCACGGAAGTTTGAGGTCCCAAGATGACTAACTTTTCAGGCGAAGGTGGGTCTATTTATTTTGGCGAATATGAGGCACACGAATTGATCCATAATGGTGCGAGAATTCAGTGGCACGCTAACCTCCAGAACAGAA

mRNA sequence

ATGTTATTTGCAGAACTTGAAATCAAGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGCTGGTTGTGCCGTTTCGTATTTCCTCAGAAATGATCGTTTCTTTGTCTTGAAGTATTTAGGGCTGCAAGCCTAATGGTCGTTGGCACTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATACCATGGGCTAGGTCTGATAACCAAAGCCTCCAATCCGATAGAACGCATGGACGTTCACTTTCCCATGCATTACGTCCATGACTGGTTAACCCATTATTTTGGCACACATTATCCACTTCCCACGGAAGTTTGAGGTCCCAAGATGACTAACTTTTCAGGCGAAGGTGGGTCTATTTATTTTGGCGAATATGAGGCACACGAATTGATCCATAATGGTGCGAGAATTCAGTGGCACGCTAACCTCCAGAACAGAA

Coding sequence (CDS)

ATGGTCGTTGGCACTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATACCATGGGCTAGGTCTGATAACCAAAGCCTCCAATCCGATAGAACGCATGGACGTTCACTTTCCCATGCATTACGTCCATGACTGGTTAACCCATTATTTTGGCACACATTATCCACTTCCCACGGAAGTTTGA

Protein sequence

MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTEV

Homology

[Close]

BLAST of MELO3C034692 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 6.3e-24
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           M  GTIYSLAVPVLANIYHGLGLITKASNPI RMD HFPMHYVH WL HYFGTHYPLPTE
Sbjct: 320 MAAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTE 379

Query: 61  V 62
           V
Sbjct: 380 V 380

[Close]

BLAST of MELO3C034692 vs. NCBI nr
Match: KAA0050333.1 (hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 6.3e-24
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           M  GTIYSLAVPVLANIYHGLGLITKASNPI RMD HFPMHYVH WL HYFGTHYPLPTE
Sbjct: 202 MATGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTE 261

Query: 61  V 62
           V
Sbjct: 262 V 262

[Close]

BLAST of MELO3C034692 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 6.3e-24
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           M  GTIYSLAVPVLANIYHGLGLITKASNPI RMD HFPMHYVH WL HYFGTHYPLPTE
Sbjct: 49  MAAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTE 108

Query: 61  V 62
           V
Sbjct: 109 V 109

[Close]

BLAST of MELO3C034692 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           MV GTIYSLAVPVLANIYHGLGLITKASNPI RMD HFPMHYVH WL HYFGTHYPLP E
Sbjct: 178 MVAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPRE 237

Query: 61  V 62
           V
Sbjct: 238 V 238

[Close]

BLAST of MELO3C034692 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 54/61 (88.52%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           M  GTIYSLAVPVLANIYHGLGLITKASNP  RMD HFPMHYVH WL HYFGTHYPLPTE
Sbjct: 348 MTAGTIYSLAVPVLANIYHGLGLITKASNPTGRMDFHFPMHYVHGWLAHYFGTHYPLPTE 407

Query: 61  V 62
           V
Sbjct: 408 V 408

[Close]

BLAST of MELO3C034692 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-24
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           M  GTIYSLAVPVLANIYHGLGLITKASNPI RMD HFPMHYVH WL HYFGTHYPLPTE
Sbjct: 49  MAAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTE 108

Query: 61  V 62
           V
Sbjct: 109 V 109

[Close]

BLAST of MELO3C034692 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-24
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           M  GTIYSLAVPVLANIYHGLGLITKASNPI RMD HFPMHYVH WL HYFGTHYPLPTE
Sbjct: 320 MAAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTE 379

Query: 61  V 62
           V
Sbjct: 380 V 380

[Close]

BLAST of MELO3C034692 vs. ExPASy TrEMBL
Match: A0A5A7U349 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00590 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-24
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           M  GTIYSLAVPVLANIYHGLGLITKASNPI RMD HFPMHYVH WL HYFGTHYPLPTE
Sbjct: 202 MATGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTE 261

Query: 61  V 62
           V
Sbjct: 262 V 262

[Close]

BLAST of MELO3C034692 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.2e-24
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           MV GTIYSLAVPVLANIYHGLGLITKASNPI RMD HFPMHYVH WL HYFGTHYPLP E
Sbjct: 178 MVAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPRE 237

Query: 61  V 62
           V
Sbjct: 238 V 238

[Close]

BLAST of MELO3C034692 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 54/61 (88.52%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MVVGTIYSLAVPVLANIYHGLGLITKASNPIERMDVHFPMHYVHDWLTHYFGTHYPLPTE 60
           M  GTIYSLAVPVLANIYHGLGLITKASNP  RMD HFPMHYVH WL HYFGTHYPLPTE
Sbjct: 348 MTAGTIYSLAVPVLANIYHGLGLITKASNPTGRMDFHFPMHYVHGWLAHYFGTHYPLPTE 407

Query: 61  V 62
           V
Sbjct: 408 V 408

The following BLAST results are available for this feature:

BLAST of MELO3C034692 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047478.1	6.3e-24	90.16	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
KAA0050333.1	6.3e-24	90.16	hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa]	[more]
KAA0031751.1	6.3e-24	90.16	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	1.1e-23	90.16	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]
KAA0065375.1	2.4e-23	88.52	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034692 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034692 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQC9	3.1e-24	90.16	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TX42	3.1e-24	90.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U349	3.1e-24	90.16	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVI5	5.2e-24	90.16	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VHW8	1.2e-23	88.52	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of MELO3C034692 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034692.1	MELO3C034692.1	mRNA