MELO3C034673 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034673
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr01: 27908973 .. 27909664 (+)
RNA-Seq Expression	MELO3C034673
Synteny	MELO3C034673

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGTTGGCTATTCTGCAGTTATGGTAGTCTTTATAGTTTGAAGTTAGTTTTAGTGAAAATTTTGAGAGATTGTATAGAGAAGTAAGTTTAGGATGTGAGAGAAGAGAAATATGTTAATAATCAAACATATTAATGTTTTAGGGACTTAAACGATAGACAAGGGTTGGAAGAAACTTAGGAATAAGTTTTCCCTTGAGTATAGAGAGGGGTGACCCAATTTTTAAAACTTGCCAAGTTTCATGTTGATGCCTGTGGACGAATAAGGTGTCCATGCAAGAGATGTATGAACTTAAATTGAAACTCACAAGAGGGTGTGAAATGACATCTACTGACTATTGGAATATCCCCCTACTACACAAAATGAGTGTATCATGGAGAGTCATTAAGCTTCAAAGGTACAGAAAACTTTGAGGAAAGAACTAGTAGTAACCCTTTTGATGAAGGAACTAGTAGTAGGCAGTTTAATGAAGAAGATGATATATTTCGTATGTTGAATGATTTACAAGCCTCGATTGAACAAGAAGAAGAAACGGAGGAACGTCGTTTGGAAGATGAAATGCTGAGAAATATTGGGGTAGATATAAATGAAGATATAACAAACATATTTCAAGACTTATTGAATGAAGCACGTAATGAGTTGTACCCCAGTTGTTCTGAATTTTTGTCCTTGAATTTTTTGGTTAAGTTAA

mRNA sequence

GTTGTGTTGGCTATTCTGCAGTTATGGTAGTCTTTATAGTTTGAAGTTAGTTTTAGTGAAAATTTTGAGAGATTGTATAGAGAAGTAAGTTTAGGATGTTTGCCAAGTTTCATGTTGATGCCTGTGGACGAATAAGGTGTCCATGCAAGAGATGTATGAACTTAAATTGAAACTCACAAGAGGGTGTGAAATGACATCTACTGACTATTGGAATATCCCCCTACTACACAAAATGAGTGTATCATGGAGAGTCATTAAGCTTCAAAGGTACAGAAAACTTTGAGGAAAGAACTAGTAGTAACCCTTTTGATGAAGGAACTAGTAGTAGGCAGTTTAATGAAGAAGATGATATATTTCGTATGTTGAATGATTTACAAGCCTCGATTGAACAAGAAGAAGAAACGGAGGAACGTCGTTTGGAAGATGAAATGCTGAGAAATATTGGGGTAGATATAAATGAAGATATAACAAACATATTTCAAGACTTATTGAATGAAGCACGTAATGAGTTGTACCCCAGTTGTTCTGAATTTTTGTCCTTGAATTTTTTGGTTAAGTTAA

Coding sequence (CDS)

ATGTTGAATGATTTACAAGCCTCGATTGAACAAGAAGAAGAAACGGAGGAACGTCGTTTGGAAGATGAAATGCTGAGAAATATTGGGGTAGATATAAATGAAGATATAACAAACATATTTCAAGACTTATTGAATGAAGCACGTAATGAGTTGTACCCCAGTTGTTCTGAATTTTTGTCCTTGAATTTTTTGGTTAAGTTA

Protein sequence

MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLSLNFLVKL

Homology

[Close]

BLAST of MELO3C034673 vs. NCBI nr
Match: TYK16767.1 (transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 4.7e-20
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          MLNDL+A IEQEEE EE RLEDEM RNIGVD++ED TNIFQDLLNE RN+LYP CSEF S
Sbjct: 33 MLNDLEAPIEQEEEIEEGRLEDEMSRNIGVDLDEDTTNIFQDLLNETRNKLYPGCSEFFS 92

Query: 61 LNFLVKL 68
          LNFLVKL
Sbjct: 93 LNFLVKL 99

[Close]

BLAST of MELO3C034673 vs. NCBI nr
Match: TYK20936.1 (CACTA transposable element [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 4.0e-19
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          MLNDLQ  IEQEEE EERRL+DEM  N+GV+I+ED TNIFQDLLNEA NELYP CSEF S
Sbjct: 1  MLNDLQVLIEQEEELEERRLDDEMSMNVGVEIDEDRTNIFQDLLNEAHNELYPGCSEFSS 60

Query: 61 LNFLVKL 68
          LNFLVKL
Sbjct: 61 LNFLVKL 67

[Close]

BLAST of MELO3C034673 vs. NCBI nr
Match: TYK27858.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 4.0e-19
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          +LNDLQA IE+EEE EER LEDEM  N+GVDI+ED TNIFQ+LLNEARNELYP CSEF S
Sbjct: 4  ILNDLQAPIEEEEELEERHLEDEMSMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSS 63

Query: 61 LNFLVKL 68
          LNFLVKL
Sbjct: 64 LNFLVKL 70

[Close]

BLAST of MELO3C034673 vs. NCBI nr
Match: KAA0066710.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 5.2e-19
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          +LNDLQA IE+EEE EER LEDEM  N+GVDI+ED TNIFQ+LLNEARNELYP CSEF S
Sbjct: 4  ILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSS 63

Query: 61 LNFLVKL 68
          LNFLVKL
Sbjct: 64 LNFLVKL 70

[Close]

BLAST of MELO3C034673 vs. NCBI nr
Match: KAA0026277.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21473.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          MLNDLQA IEQEEETEERRLEDEM  N+GVDI++D TNIF DLLNEARNELYP  SEF S
Sbjct: 1  MLNDLQAPIEQEEETEERRLEDEMPMNVGVDIDKDRTNIFHDLLNEARNELYPGYSEFSS 60

Query: 61 LNFLVKL 68
          LN LVKL
Sbjct: 61 LNLLVKL 67

[Close]

BLAST of MELO3C034673 vs. ExPASy TrEMBL
Match: A0A5D3CY95 (Transposon protein, putative, CACTA, En/Spm sub-class, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00220 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          MLNDL+A IEQEEE EE RLEDEM RNIGVD++ED TNIFQDLLNE RN+LYP CSEF S
Sbjct: 33 MLNDLEAPIEQEEEIEEGRLEDEMSRNIGVDLDEDTTNIFQDLLNETRNKLYPGCSEFFS 92

Query: 61 LNFLVKL 68
          LNFLVKL
Sbjct: 93 LNFLVKL 99

[Close]

BLAST of MELO3C034673 vs. ExPASy TrEMBL
Match: A0A5D3DBJ4 (CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00820 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-19
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          MLNDLQ  IEQEEE EERRL+DEM  N+GV+I+ED TNIFQDLLNEA NELYP CSEF S
Sbjct: 1  MLNDLQVLIEQEEELEERRLDDEMSMNVGVEIDEDRTNIFQDLLNEAHNELYPGCSEFSS 60

Query: 61 LNFLVKL 68
          LNFLVKL
Sbjct: 61 LNFLVKL 67

[Close]

BLAST of MELO3C034673 vs. ExPASy TrEMBL
Match: A0A5D3DWP4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00360 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-19
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          +LNDLQA IE+EEE EER LEDEM  N+GVDI+ED TNIFQ+LLNEARNELYP CSEF S
Sbjct: 4  ILNDLQAPIEEEEELEERHLEDEMSMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSS 63

Query: 61 LNFLVKL 68
          LNFLVKL
Sbjct: 64 LNFLVKL 70

[Close]

BLAST of MELO3C034673 vs. ExPASy TrEMBL
Match: A0A5A7VHN9 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00440 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          +LNDLQA IE+EEE EER LEDEM  N+GVDI+ED TNIFQ+LLNEARNELYP CSEF S
Sbjct: 4  ILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSS 63

Query: 61 LNFLVKL 68
          LNFLVKL
Sbjct: 64 LNFLVKL 70

[Close]

BLAST of MELO3C034673 vs. ExPASy TrEMBL
Match: A0A5A7SNK0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00050 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-19
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MLNDLQASIEQEEETEERRLEDEMLRNIGVDINEDITNIFQDLLNEARNELYPSCSEFLS 60
          MLNDLQA IEQEEETEERRLEDEM  N+GVDI++D TNIF DLLNEARNELYP  SEF S
Sbjct: 1  MLNDLQAPIEQEEETEERRLEDEMPMNVGVDIDKDRTNIFHDLLNEARNELYPGYSEFSS 60

Query: 61 LNFLVKL 68
          LN LVKL
Sbjct: 61 LNLLVKL 67

The following BLAST results are available for this feature:

BLAST of MELO3C034673 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16767.1	4.7e-20	82.09	transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo v...	[more]
TYK20936.1	4.0e-19	80.60	CACTA transposable element [Cucumis melo var. makuwa]	[more]
TYK27858.1	4.0e-19	80.60	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066710.1	5.2e-19	80.60	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0026277.1	1.2e-18	82.09	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21473.1 CACTA en-...	[more]

BLAST of MELO3C034673 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034673 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CY95	2.3e-20	82.09	Transposon protein, putative, CACTA, En/Spm sub-class, expressed OS=Cucumis melo...	[more]
A0A5D3DBJ4	1.9e-19	80.60	CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3DWP4	1.9e-19	80.60	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7VHN9	2.5e-19	80.60	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SNK0	5.6e-19	82.09	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C034673 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034673.1	MELO3C034673.1	mRNA