MELO3C034667.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C034667.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	PHD finger protein ALFIN-LIKE 3-like
Location	chr11: 9609871 .. 9610050 (+)
RNA-Seq Expression	MELO3C034667.jh1
Synteny	MELO3C034667.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGAACATGCGCAAGGCAGTCGCATACAAGGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGGAAGTTTGTTGTATGA

mRNA sequence

ATGCAAGGAACATGCGCAAGGCAGTCGCATACAAGGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGGAAGTTTGTTGTATGA

Coding sequence (CDS)

ATGCAAGGAACATGCGCAAGGCAGTCGCATACAAGGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGGAAGTTTGTTGTATGA

Protein sequence

MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV

Homology

[Close]

BLAST of MELO3C034667.jh1 vs. NCBI nr
Match: TYK29017.1 (PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 6.37e-36
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
          MQGTCARQS   EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYE WFHGKFVV
Sbjct: 1  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV 59

[Close]

BLAST of MELO3C034667.jh1 vs. NCBI nr
Match: XP_016903323.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo])

HSP 1 Score: 121 bits (303), Expect = 4.40e-34
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
          MQGTCARQS  R+EVETYEED+DEH D LCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 39 MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 97

[Close]

BLAST of MELO3C034667.jh1 vs. NCBI nr
Match: KAA0067842.1 (PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 1.27e-33
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
           MQGTCARQS  R+EVETYEED+DEH D LCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 75  MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 133

[Close]

BLAST of MELO3C034667.jh1 vs. NCBI nr
Match: TYJ98373.1 (PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 3.39e-32
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7   RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
           RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 175 RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 227

[Close]

BLAST of MELO3C034667.jh1 vs. NCBI nr
Match: KAA0032497.1 (PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 4.02e-31
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 7   RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
           RQS TREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 163 RQSQTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 215

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy Swiss-Prot
Match: Q5XEM9 (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.4e-15
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ EKWFHG+ V
Sbjct: 190 EGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy Swiss-Prot
Match: Q9FFF5 (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-14
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 16  ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E+W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy Swiss-Prot
Match: Q9M2B4 (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-13
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 2   QGTCARQSHTREEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           +G  ++    +EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ EKWFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy Swiss-Prot
Match: O81488 (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-13
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 7   RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           +     EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 179 KDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy Swiss-Prot
Match: B8B8C5 (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26819 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-13
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 22  EDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E+EHG+TLC ACGE+Y +DEFWICCDI EKWFHGK V
Sbjct: 203 EEEHGETLCGACGESYGADEFWICCDICEKWFHGKCV 239

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DYQ4 (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001280 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 3.08e-36
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
          MQGTCARQS   EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYE WFHGKFVV
Sbjct: 1  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV 59

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E514 (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 2.13e-34
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
          MQGTCARQS  R+EVETYEED+DEH D LCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 39 MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 97

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VHJ0 (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00500 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 6.17e-34
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
           MQGTCARQS  R+EVETYEED+DEH D LCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 75  MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 133

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BGJ5 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001100 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.64e-32
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7   RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
           RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 175 RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 227

[Close]

BLAST of MELO3C034667.jh1 vs. ExPASy TrEMBL
Match: A0A5A7ST15 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00040 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 1.95e-31
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 7   RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 59
           RQS TREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 163 RQSQTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 215

[Close]

BLAST of MELO3C034667.jh1 vs. TAIR 10
Match: AT5G20510.1 (alfin-like 5 )

HSP 1 Score: 80.9 bits (198), Expect = 3.8e-16
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ EKWFHG+ V
Sbjct: 190 EGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C034667.jh1 vs. TAIR 10
Match: AT5G05610.1 (alfin-like 1 )

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-15
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 16  ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E+W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C034667.jh1 vs. TAIR 10
Match: AT5G05610.2 (alfin-like 1 )

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-15
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 16  ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E+W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C034667.jh1 vs. TAIR 10
Match: AT3G42790.1 (alfin-like 3 )

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-14
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 2   QGTCARQSHTREEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           +G  ++    +EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ EKWFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

[Close]

BLAST of MELO3C034667.jh1 vs. TAIR 10
Match: AT5G26210.1 (alfin-like 4 )

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-14
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 7   RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           +     EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 179 KDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

The following BLAST results are available for this feature:

BLAST of MELO3C034667.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29017.1	6.37e-36	93.22	PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa]	[more]
XP_016903323.1	4.40e-34	89.83	PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo]	[more]
KAA0067842.1	1.27e-33	89.83	PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa]	[more]
TYJ98373.1	3.39e-32	100.00	PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0032497.1	4.02e-31	98.11	PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034667.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XEM9	5.4e-15	73.91	PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1	[more]
Q9FFF5	2.7e-14	67.44	PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1	[more]
Q9M2B4	5.1e-13	55.17	PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1	[more]
O81488	5.1e-13	61.54	PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2	[more]
B8B8C5	5.1e-13	78.38	PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26...	[more]

BLAST of MELO3C034667.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYQ4	3.08e-36	93.22	PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S4E514	2.13e-34	89.83	PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=...	[more]
A0A5A7VHJ0	6.17e-34	89.83	PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BGJ5	1.64e-32	100.00	PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7ST15	1.95e-31	98.11	PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of MELO3C034667.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20510.1	3.8e-16	73.91	alfin-like 5	[more]
AT5G05610.1	1.9e-15	67.44	alfin-like 1	[more]
AT5G05610.2	1.9e-15	67.44	alfin-like 1	[more]
AT3G42790.1	3.6e-14	55.17	alfin-like 3	[more]
AT5G26210.1	3.6e-14	61.54	alfin-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 19..59 e-value: 3.5E-13 score: 50.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR12321:SF141	PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1	coord: 4..58
IPR045104	Alfin	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 4..58
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 18..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034667.jh1.t1	MELO3C034667.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0042393	histone binding