MELO3C034642.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034642.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr11: 8270084 .. 8270745 (-)
RNA-Seq ExpressionMELO3C034642.jh1
SyntenyMELO3C034642.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATGGATGTGACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGGTACATATTTAAATATTGTATAATTACTTAAATTATTTATTCAATTAAATATTTCTAATTTTTTTTTACAATTTACAGAGATCGAACAACGCAAGACTTCGTAATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACGTAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACTAGTTCATAGGGGACGTGTTTGAGTGAAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAAGATATTATGATGTAGGGGTCCGCCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACGGACGCGACTATGGGGAACATAACGAATATCTGTATCATGAAGCATGCAGTTATTGTTGATCAACTTAACTGAACAAACATATGTCCAG

mRNA sequence

ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATGGATGTGACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGAGATCGAACAACGCAAGACTTCGTAATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACGTAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACTAGTTCATAGGGGACGTGTTTGAGTGAAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAAGATATTATGATGTAGGGGTCCGCCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACGGACGCGACTATGGGGAACATAACGAATATCTGTATCATGAAGCATGCAGTTATTGTTGATCAACTTAACTGAACAAACATATGTCCAG

Coding sequence (CDS)

ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATGGATGTGACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGAGATCGAACAACGCAAGACTTCGTAATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACGTAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACTAGTTCATAGGGGACGTGTTTGA

Protein sequence

MAIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDICNNNERYVEEIHNMYDLPIVPPLVHRGRV
Homology
[Close]
BLAST of MELO3C034642.jh1 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (435), Expect = 2.12e-52
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 1  MAIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDI 60
          M IGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNN RLR+VA DPQQVLD+
Sbjct: 1  MTIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNVRLRDVAYDPQQVLDL 60

Query: 61 CNNNERYVEEIHNMYDLPIVPPLVHRGRV 89
           NNNERY++EIHNMYDLPIVPPLVHRGRV
Sbjct: 61 FNNNERYMKEIHNMYDLPIVPPLVHRGRV 89

[Close]
BLAST of MELO3C034642.jh1 vs. NCBI nr
Match: TYK04204.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 8.13e-52
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0 

Query: 1  MAIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDI 60
          MAIGVSIQQFDMDVTQEYIHWYNN+ RLYITR G AVGHLRSNNARLR+V DD QQVLDI
Sbjct: 1  MAIGVSIQQFDMDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDI 60

Query: 61 CNNNERYVEEIHNMYDLPIVPPLVHRGRV 89
          CNNNERY++EI+NMYDLPIVPP VHRGRV
Sbjct: 61 CNNNERYIDEIYNMYDLPIVPPPVHRGRV 89

[Close]
BLAST of MELO3C034642.jh1 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 2.02e-50
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 0 

Query: 3   IGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDICN 62
           IGVSIQQFD+DVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLR+VADDPQQVL+ICN
Sbjct: 102 IGVSIQQFDIDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICN 161

Query: 63  NNERYVEEIHNMYDLPIVPPLVHRGRV 89
           NN+RY+EEIHNMYDL IVPP VHRGRV
Sbjct: 162 NNKRYMEEIHNMYDLSIVPPPVHRGRV 188

[Close]
BLAST of MELO3C034642.jh1 vs. NCBI nr
Match: KAA0025967.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (418), Expect = 5.99e-50
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 1  MAIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDI 60
          MAIGVSIQQFDMDVTQEYIHWYNN+ RLYITR G AVGHLRSNNARLR+V DD QQVLDI
Sbjct: 1  MAIGVSIQQFDMDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDI 60

Query: 61 CNNNERYVEEIHNMYDLPIVPPLVHRGR 88
          CNNNERY++EI+NMYDLPIVPP VHRGR
Sbjct: 61 CNNNERYMDEIYNMYDLPIVPPPVHRGR 88

[Close]
BLAST of MELO3C034642.jh1 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 4.11e-49
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 3   IGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDICN 62
           IGVSIQQFD+DVTQEYIHWYNNITRLYITRP AAVGHLRSNNARLR+VADDPQQVL+ICN
Sbjct: 111 IGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICN 170

Query: 63  NNERYVEEIHNMYDLPIVPPLVHRGRV 89
           NN+RY+EEIHNMYDL IVPP VHRGRV
Sbjct: 171 NNKRYMEEIHNMYDLSIVPPPVHRGRV 197

[Close]
BLAST of MELO3C034642.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 1.03e-52
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 1  MAIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDI 60
          M IGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNN RLR+VA DPQQVLD+
Sbjct: 1  MTIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNVRLRDVAYDPQQVLDL 60

Query: 61 CNNNERYVEEIHNMYDLPIVPPLVHRGRV 89
           NNNERY++EIHNMYDLPIVPPLVHRGRV
Sbjct: 61 FNNNERYMKEIHNMYDLPIVPPLVHRGRV 89

[Close]
BLAST of MELO3C034642.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BYZ0 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00020 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 3.94e-52
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0 

Query: 1  MAIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDI 60
          MAIGVSIQQFDMDVTQEYIHWYNN+ RLYITR G AVGHLRSNNARLR+V DD QQVLDI
Sbjct: 1  MAIGVSIQQFDMDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDI 60

Query: 61 CNNNERYVEEIHNMYDLPIVPPLVHRGRV 89
          CNNNERY++EI+NMYDLPIVPP VHRGRV
Sbjct: 61 CNNNERYIDEIYNMYDLPIVPPPVHRGRV 89

[Close]
BLAST of MELO3C034642.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 9.77e-51
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 0 

Query: 3   IGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDICN 62
           IGVSIQQFD+DVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLR+VADDPQQVL+ICN
Sbjct: 102 IGVSIQQFDIDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICN 161

Query: 63  NNERYVEEIHNMYDLPIVPPLVHRGRV 89
           NN+RY+EEIHNMYDL IVPP VHRGRV
Sbjct: 162 NNKRYMEEIHNMYDLSIVPPPVHRGRV 188

[Close]
BLAST of MELO3C034642.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SMM2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002820 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 2.90e-50
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 1  MAIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDI 60
          MAIGVSIQQFDMDVTQEYIHWYNN+ RLYITR G AVGHLRSNNARLR+V DD QQVLDI
Sbjct: 1  MAIGVSIQQFDMDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDI 60

Query: 61 CNNNERYVEEIHNMYDLPIVPPLVHRGR 88
          CNNNERY++EI+NMYDLPIVPP VHRGR
Sbjct: 61 CNNNERYMDEIYNMYDLPIVPPPVHRGR 88

[Close]
BLAST of MELO3C034642.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 1.99e-49
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 3   IGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRNVADDPQQVLDICN 62
           IGVSIQQFD+DVTQEYIHWYNNITRLYITRP AAVGHLRSNNARLR+VADDPQQVL+ICN
Sbjct: 111 IGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICN 170

Query: 63  NNERYVEEIHNMYDLPIVPPLVHRGRV 89
           NN+RY+EEIHNMYDL IVPP VHRGRV
Sbjct: 171 NNKRYMEEIHNMYDLSIVPPPVHRGRV 197

The following BLAST results are available for this feature:
BLAST of MELO3C034642.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066693.12.12e-5291.01mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK04204.18.13e-5287.64mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.12.02e-5091.95mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0025967.15.99e-5087.50mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0038951.14.11e-4990.80mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of MELO3C034642.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034642.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VF641.03e-5291.01Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3BYZ03.94e-5287.64Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH239.77e-5191.95Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7SMM22.90e-5087.50Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TBF81.99e-4990.80Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of MELO3C034642.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034642.jh1.t1MELO3C034642.jh1.t1mRNA