MELO3C034615 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034615
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr06: 19018879 .. 19019208 (-)
RNA-Seq Expression	MELO3C034615
Synteny	MELO3C034615

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATTAGTCCGCTAATAGGTTTCTACATTGGTTAGTGGCATCATCCTGATAGAGTACTTAGACAGTTTGGTAGTCAACAAGCTGTTCCACATGAATGTAATACTGAACCACTGTTGTACGATATTGACCTGAGGACTGTTGATTGGTCAGATAGAATTGTTCATTTAGTGATGCGATGGCTAAATCATAGAAGGTTTACTGCTAAGGGACCTCCAATTGAGCAATTTAATATGGATATAACTCAAGAATACATCCATTGGTACAAAAACATTACTAGGCCCTATATCACCCAATCAGGAGCTGCTGTAGGTCATCTGGTATACATTTAA

mRNA sequence

ACGATTAGTCCGCTAATAGGTTTCTACATTGGTTAGTGGCATCATCCTGATAGAGTACTTAGACAGTTTGGTAGTCAACAAGCTGTTCCACATGAATGTAATACTGAACCACTGTTGTACGATATTGACCTGAGGACTGTTGATTGGTCAGATAGAATTGTTCATTTAGTGATGCGATGGCTAAATCATAGAAGGTTTACTGCTAAGGGACCTCCAATTGAGCAATTTAATATGGATATAACTCAAGAATACATCCATTGGTACAAAAACATTACTAGGCCCTATATCACCCAATCAGGAGCTGCTGTAGGTCATCTGGTATACATTTAA

Coding sequence (CDS)

ATGCGATGGCTAAATCATAGAAGGTTTACTGCTAAGGGACCTCCAATTGAGCAATTTAATATGGATATAACTCAAGAATACATCCATTGGTACAAAAACATTACTAGGCCCTATATCACCCAATCAGGAGCTGCTGTAGGTCATCTGGTATACATTTAA

Protein sequence

MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHLVYI

Homology

[Close]

BLAST of MELO3C034615 vs. NCBI nr
Match: KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 5.4e-16
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHL 50
           MRWLN RRFTA GP +EQF+MD+TQEYIHWYKNITR YITQ GA VGHL
Sbjct: 65  MRWLNRRRFTATGPLVEQFDMDVTQEYIHWYKNITRLYITQPGAVVGHL 113

[Close]

BLAST of MELO3C034615 vs. NCBI nr
Match: KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 4.6e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHL 50
           MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNI++ YITQ GAA+ HL
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 301

[Close]

BLAST of MELO3C034615 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 4.6e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1  MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHL 50
          MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNI++ YITQ GAA+ HL
Sbjct: 1  MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 49

[Close]

BLAST of MELO3C034615 vs. NCBI nr
Match: TYK14590.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 4.6e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHL 50
           MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNI++ YITQ GAA+ HL
Sbjct: 553 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 601

[Close]

BLAST of MELO3C034615 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 4.6e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHL 50
           MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNI++ YITQ GAA+ HL
Sbjct: 744 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 792

[Close]

BLAST of MELO3C034615 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHL 50
           MRWLN RRFTA GP +EQF+MD+TQEYIHWYKNITR YITQ GA VGHL
Sbjct: 65  MRWLNRRRFTATGPLVEQFDMDVTQEYIHWYKNITRLYITQPGAVVGHL 113

[Close]

BLAST of MELO3C034615 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHL 50
           MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNI++ YITQ GAA+ HL
Sbjct: 744 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 792

[Close]

BLAST of MELO3C034615 vs. ExPASy TrEMBL
Match: A0A5D3CT32 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00900 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHL 50
           MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNI++ YITQ GAA+ HL
Sbjct: 553 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 601

[Close]

BLAST of MELO3C034615 vs. ExPASy TrEMBL
Match: A0A5A7TEE9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00760 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHLV 51
           MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNIT+ YITQ  AA+ HLV
Sbjct: 222 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNITKLYITQPEAAMSHLV 271

[Close]

BLAST of MELO3C034615 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1    MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHL 50
            MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNI++ YITQ GAA+ HL
Sbjct: 1014 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 1062

The following BLAST results are available for this feature:

BLAST of MELO3C034615 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050408.1	5.4e-16	81.63	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0036767.1	4.6e-15	77.55	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
XP_008449513.1	4.6e-15	77.55	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]
TYK14590.1	4.6e-15	77.55	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK27427.1	4.6e-15	77.55	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of MELO3C034615 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034615 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U558	2.6e-16	81.63	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DUI1	2.2e-15	77.55	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CT32	2.2e-15	77.55	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7TEE9	2.2e-15	78.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BAB0	2.2e-15	77.55	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of MELO3C034615 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034615.1	MELO3C034615.1	mRNA