MELO3C034605.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034605.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr11: 4177848 .. 4178423 (+)
RNA-Seq ExpressionMELO3C034605.jh1
SyntenyMELO3C034605.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATCTTTCAAATCATATAATACTCACCAACTACAAATCGTATATGGTGAAAACCTCGACAAGGTTCGCTCTCTTGTTCCTAATGTTTTTCGTTATCTCAGGTATATCAATCAATTTTAACTGTTTATAGCCGATTTTTTTTCTTTTCGCAATAGTTTATCTTATTGTATGACAATTTAACAATTACATTACTTTAGAAACACTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCGTGGGACTGTGATTGCAAGCTCAACTTATGTTTTTGTCAACCAAATGGATCAGAAAAGAAATTTTTTCACAAAGCCTTTCCTGAATATTTGAGAGAGGAAAAGACAACGCTCCTAGAAAATTAACATATGTTCTCCACCCAAATTTAGATCTACATACATAGCTCATAAATCGAAAGAAATTGTATTTTACTACGAAACACATAAATAGTATATGACTATAATTTCTCTACCAGAACAGTAATATATGACAGCATAAATAATCAATTCATCGATGTTACGTTTGTATACTCTAATATTAACATCT

mRNA sequence

CAAATCTTTCAAATCATATAATACTCACCAACTACAAATCGTATATGGTGAAAACCTCGACAAGGTTCGCTCTCTTGTTCCTAATGTTTTTCGTTATCTCAGAAACACTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCGTGGGACTGTGATTGCAAGCTCAACTTATGTTTTTGTCAACCAAATGGATCAGAAAAGAAATTTTTTCACAAAGCCTTTCCTGAATATTTGAGAGAGGAAAAGACAACGCTCCTAGAAAATTAACATATGTTCTCCACCCAAATTTAGATCTACATACATAGCTCATAAATCGAAAGAAATTGTATTTTACTACGAAACACATAAATAGTATATGACTATAATTTCTCTACCAGAACAGTAATATATGACAGCATAAATAATCAATTCATCGATGTTACGTTTGTATACTCTAATATTAACATCT

Coding sequence (CDS)

ATGGTGAAAACCTCGACAAGGTTCGCTCTCTTGTTCCTAATGTTTTTCGTTATCTCAGAAACACTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCGTGGGACTGTGATTGCAAGCTCAACTTATGTTTTTGTCAACCAAATGGATCAGAAAAGAAATTTTTTCACAAAGCCTTTCCTGAATATTTGAGAGAGGAAAAGACAACGCTCCTAGAAAATTAA

Protein sequence

MVKTSTRFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNGSEKKFFHKAFPEYLREEKTTLLEN
Homology
BLAST of MELO3C034605.jh1 vs. NCBI nr
Match: KAE8651915.1 (hypothetical protein Csa_006059 [Cucumis sativus])

HSP 1 Score: 137 bits (346), Expect = 2.36e-40
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MVKTSTRFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          MVK+ST+ ALL LMFF+ISE +FV++ARNVVNIPC SRIDCSDPWDCDCKLNLCFC P+G
Sbjct: 1  MVKSSTKLALLLLMFFIISE-MFVANARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFFHKAFPEYLREEKTTLL 82
           EKKF H AFPE+LREEKTT L
Sbjct: 61 LEKKFLHNAFPEHLREEKTTSL 81

BLAST of MELO3C034605.jh1 vs. NCBI nr
Match: KGN61957.1 (hypothetical protein Csa_006779 [Cucumis sativus])

HSP 1 Score: 137 bits (344), Expect = 4.64e-40
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 0

Query: 1  MVKTSTRFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          MVK  T+FAL FLM F+ISE LFVSDARNVVNIPC+SRIDCSDPWDCDCKLNLCFC P+G
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFFHKAFPEYLREEK 78
           EKKF HKAFPE LRE++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

BLAST of MELO3C034605.jh1 vs. NCBI nr
Match: OMO57769.1 (ATP-binding/protein serine/threonine kinase [Corchorus olitorius])

HSP 1 Score: 50.1 bits (118), Expect = 9.26e-06
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 26 DARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQP 58
          +ARN+ NIPC +  DC DP  C+C++NLCFC P
Sbjct: 27 EARNI-NIPCNTIKDCPDPVKCECRINLCFCHP 58

BLAST of MELO3C034605.jh1 vs. NCBI nr
Match: EOY32073.1 (Uncharacterized protein TCM_039538 [Theobroma cacao])

HSP 1 Score: 48.9 bits (115), Expect = 2.51e-05
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 26 DARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQP 58
          +ARN+ N PC +  DC+DP  C+C++NLCFC P
Sbjct: 26 EARNI-NTPCNTVKDCADPIKCECRMNLCFCHP 57

BLAST of MELO3C034605.jh1 vs. NCBI nr
Match: EOY32074.1 (Uncharacterized protein TCM_039540 [Theobroma cacao])

HSP 1 Score: 48.9 bits (115), Expect = 2.51e-05
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 26 DARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQP 58
          +ARN+ N PC +  DC+DP  C+C++NLCFC P
Sbjct: 26 EARNI-NTPCNTVKDCADPIKCECRINLCFCHP 57

BLAST of MELO3C034605.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LJR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 4.85e-42
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MVKTSTRFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          MVK+ST+ ALL LMFF+ISET FV+DARNVVNIPC SRIDCSDPWDCDCKLNLCFC P+G
Sbjct: 1  MVKSSTKLALLLLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFFHKAFPEYLREEKTTLL 82
           EKKF H AFPE+LREEKTT L
Sbjct: 61 LEKKFLHNAFPEHLREEKTTSL 81

BLAST of MELO3C034605.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LMG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 2.24e-40
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 0

Query: 1  MVKTSTRFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          MVK  T+FAL FLM F+ISE LFVSDARNVVNIPC+SRIDCSDPWDCDCKLNLCFC P+G
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFFHKAFPEYLREEK 78
           EKKF HKAFPE LRE++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

BLAST of MELO3C034605.jh1 vs. ExPASy TrEMBL
Match: A0A2N9FRQ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.56e-08
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 1  MVKTSTRFALLFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQPNG 60
          M K+S + AL+ ++  + S   F  DARNVV IPC++  DC D   CDC  N C C   G
Sbjct: 1  MEKSSLKLALIVVLLLIASSFQFRVDARNVVVIPCETYNDCRDSAKCDCVHNHCRCP--G 60

Query: 61 SEKKFFHKAFPEYLREE 77
           E+ FF KA   +L+ +
Sbjct: 61 EEQDFFTKAITNHLKHD 75

BLAST of MELO3C034605.jh1 vs. ExPASy TrEMBL
Match: A0A1R3GI95 (ATP-binding/protein serine/threonine kinase OS=Corchorus olitorius OX=93759 GN=COLO4_35133 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.48e-06
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 26 DARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQP 58
          +ARN+ NIPC +  DC DP  C+C++NLCFC P
Sbjct: 27 EARNI-NIPCNTIKDCPDPVKCECRINLCFCHP 58

BLAST of MELO3C034605.jh1 vs. ExPASy TrEMBL
Match: A0A061GY75 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.22e-05
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 26 DARNVVNIPCKSRIDCSDPWDCDCKLNLCFCQP 58
          +ARN+ N PC +  DC+DP  C+C++NLCFC P
Sbjct: 26 EARNI-NTPCNTVKDCADPIKCECRINLCFCHP 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651915.12.36e-4079.27hypothetical protein Csa_006059 [Cucumis sativus][more]
KGN61957.14.64e-4080.77hypothetical protein Csa_006779 [Cucumis sativus][more]
OMO57769.19.26e-0657.58ATP-binding/protein serine/threonine kinase [Corchorus olitorius][more]
EOY32073.12.51e-0554.55Uncharacterized protein TCM_039538 [Theobroma cacao][more]
EOY32074.12.51e-0554.55Uncharacterized protein TCM_039540 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJR04.85e-4281.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1[more]
A0A0A0LMG32.24e-4080.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1[more]
A0A2N9FRQ02.56e-0841.56Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1[more]
A0A1R3GI954.48e-0657.58ATP-binding/protein serine/threonine kinase OS=Corchorus olitorius OX=93759 GN=C... [more]
A0A061GY751.22e-0554.55Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034605.jh1.t1MELO3C034605.jh1.t1mRNA