MELO3C034598.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C034598.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Protein Ycf2-like
Location	chr11: 4622110 .. 4623933 (-)
RNA-Seq Expression	MELO3C034598.jh1
Synteny	MELO3C034598.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAGGGTAAGGGAGATATCAAAACAAGAAAAAGTGATCGGTTAAGAGCTGCGGGGATCACTGGTTCTAGAAAATCATTGGCAACTGGAATACAAAATCTGTCCAGTTCTTCTGAGGAGGTACAAATGCTTGTTTTTTGAAATTATACACAAGTTCTAGATGTTTATAGGTTTTTCTATGCATATCAGAGAACAGAAAATACAATGGGAAAAGGCTCCGGGAGCAAGCGGGAGAGTCCAGGAACTTCAAAAAAGAGGGTGAGGACTGAAACGAAAAAAGATGAGGTCAATGTCCAGAAGAAACAAATGATTAAAAGTTTGGTAAAGTGTAGATTTATTCTTCAATGACTTGTGGTCTGTTAGGTTTAAAAAAACTTTTATTTATATTGTCCGTGTTTAGGTTTCGAGGAGGCAAGTATTTTTTAGAGGGCAGGGTGAAGGAAAAAAAAAACAAAAAGAGGTTAAAGGAAAGATACAACAGTCAAACCTTTGTTATGAATGAATTATGTAGTATATAAATTCATTATAACTTTGACAAACAGGAAGATACTGAAAGCAAAAGTGAAAAGGAGGAAAAAATACAAGAAGATGAAGAAGTAGTAGAAGAAGATGAACAAGATGAAGAAGTAGAAGATGAAGAAAAACAAGATGAAGAAGAGGAAGGGGAGACTACCGTAGGTGAAGATTCGAATTCATCAAGGAGTGAAATACCAACGGATATTAAGAAAAGAAAAAAGGCTGCAGAAAAGGGAAAGAAAGTAAACAAATAATTTCCATTTGGTGTATGTTATTTTACGTACATACCTTAAATTTTGGTTTTATAAACTAGGTAAAGGCTATTAAAAAAGAAAAAAAGCAAGAGAAGATAGAAGGAGGAAGGGAAAGGCCCCAATGAAGCTGGAAAAATCCGAGGTATGTATTTCTGGTGTATGTGAGTCATTTAGATACTCTGTATTTGTAGTGTTGCAAATGTATTGTATGGTACTTCTCTTATATGTGTTTTGAATTTGTGGCTTCTGTATTTTGTATGTTTAGGGTACTTGGTTGTATGCGATGTAGTTAATTACACTGTATGTATAAATTGAGAATGAAAATTGTGAATGTGTTGTATGTTATCTTATGTTGACAGTGTATTCAATTATATATATTGATTGTGTTTTATGCTGACAGTGTATTTATCGGTTCAGTGTATATGAATTTCATTATGAGATATGTGTATATAGTGCATCCAATTAAACAATATTTTTTTTATTACGAATGTAAACCATGTTCTGTTACATTGAATGTATTCACGGTCTGAGATTAATTTGTGCTAGTTACAATATATCTTTAGTGTTAATCAATTAAATGTGATAGATATATGTGTGGTTACTGATAATTTTTTCAAATCAATGTTAGGACACGGTCTACTTAATGTTTTCTGAAAGGAGAAACAAGCCTTTAAAAATCAATCTACACATTAAGAGCACAGTAGTAGACAAAATTAAGGAAAATCTTGGAGATAGGCTGATTAATAGGTTTATGGAGGGCATATTTGGGCACATTTTAAACTTCTCCATAACAAACCAATCCTCCCAATTTTTGTTGCATCTTATTCAGCGAATGTGCAAACCCAAATCGACTAGTCAACTTCAATTTATAATAGGAGGAAGGGTTCTGAGGTTTGGATTGAGAGAATTTGCGCTTATAACTGGCCTAAAATGCCATGAGATTCCTGATATTAACCATGAGGATATAAAGGGTGGCGGGCGGCTAAAAGGGGTATATTTTGAAAATCTTAAAACTGTGACGAGGCAGTACTTGAATGTTATGTTAAAATAA

mRNA sequence

ATGAAAAAGGGTAAGGGAGATATCAAAACAAGAAAAAGTGATCGGTTAAGAGCTGCGGGGATCACTGGTTCTAGAAAATCATTGGCAACTGGAATACAAAATCTGTCCAGTTCTTCTGAGGAGAGAACAGAAAATACAATGGGAAAAGGCTCCGGGAGCAAGCGGGAGAGTCCAGGAACTTCAAAAAAGAGGGTGAGGACTGAAACGAAAAAAGATGAGGTCAATGTCCAGAAGAAGAAGATACTGAAAGCAAAAGTGAAAAGGAGGAAAAAATACAAGAAGATGAAGAAGTAGTAGAAGAAGATGAACAAGATGAAGAAGTAGAAGATGAAGAAAAACAAGATGAAGAAGAGGAAGGGGAGACTACCGTAGGTGAAGATTCGAATTCATCAAGGAGTGAAATACCAACGGATATTAAGAAAAGAAAAAAGGCTGCAGAAAAGGGAAAGAAAGTAAAGGCTATTAAAAAAGAAAAAAAGCAAGAGAAGATAGAAGGAGGAAGGGAAAGGCCCCAATGAAGCTGGAAAAATCCGAGGTATGAGGAAGGGTTCTGAGGTTTGGATTGAGAGAATTTGCGCTTATAACTGGCCTAAAATGCCATGAGATTCCTGATATTAACCATGAGGATATAAAGGGTGGCGGGCGGCTAAAAGGGGTATATTTTGAAAATCTTAAAACTGTGACGAGGCAGTACTTGAATGTTATGTTAAAATAA

Coding sequence (CDS)

ATGAAAAAGGGTAAGGGAGATATCAAAACAAGAAAAAGTGATCGGTTAAGAGCTGCGGGGATCACTGGTTCTAGAAAATCATTGGCAACTGGAATACAAAATCTGTCCAGTTCTTCTGAGGAGAGAACAGAAAATACAATGGGAAAAGGCTCCGGGAGCAAGCGGGAGAGTCCAGGAACTTCAAAAAAGAGGGTGAGGACTGAAACGAAAAAAGATGAGGTCAATGTCCAGAAGAAGAAGATACTGAAAGCAAAAGTGAAAAGGAGGAAAAAATACAAGAAGATGAAGAAGTAG

Protein sequence

MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGTSKKRVRTETKKDEVNVQKKKILKAKVKRRKKYKKMKK

Homology

[Close]

BLAST of MELO3C034598.jh1 vs. NCBI nr
Match: TYK28605.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 3.41e-32
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MKKGKG+IKTR SDRLRAAGITGSRKSLATGIQNL SSSEERTE+ M +GSG KRESPGT
Sbjct: 1  MKKGKGEIKTRTSDRLRAAGITGSRKSLATGIQNLLSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRRKKY 92
          SKKRVRTETKK+E  VQKK+ +K+ V R++ Y
Sbjct: 61 SKKRVRTETKKEEATVQKKQQIKSLVSRKRVY 92

[Close]

BLAST of MELO3C034598.jh1 vs. NCBI nr
Match: KAA0064135.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 1.81e-30
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MKKGKG+IKTR SDRLRAAGITGSRKSLATGIQNL SSSEERTE+ M +GSG KRESPGT
Sbjct: 1  MKKGKGEIKTRTSDRLRAAGITGSRKSLATGIQNLLSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRR 89
          SKKRVRTETKK+E  VQKK+ +K+ VK R
Sbjct: 61 SKKRVRTETKKEEATVQKKQRIKSLVKSR 89

[Close]

BLAST of MELO3C034598.jh1 vs. NCBI nr
Match: KAA0033297.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 1.42e-29
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MK+G+G+IKTR SDRLRAAGITGSRKSL TGIQNLSSSSEERTE+ M +GSG K+ESPGT
Sbjct: 1  MKRGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKKESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRRKKY 92
          SKKRVRT+TKK+E  V KK+ +K  V R++ Y
Sbjct: 61 SKKRVRTKTKKEEATVHKKQRIKCLVSRKRVY 92

[Close]

BLAST of MELO3C034598.jh1 vs. NCBI nr
Match: KAA0067554.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (289), Expect = 6.97e-29
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MKKG+G+IKTR SDRLRAA ITGSRKSL TGIQNLSSSSEERTE+ M +GSG KRESPGT
Sbjct: 1  MKKGRGEIKTRTSDRLRAAWITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRRKKY 92
          SKKRVRTETKK+E  VQKK+ +K+ V R++ Y
Sbjct: 61 SKKRVRTETKKEEATVQKKQRIKSLVSRKRVY 92

[Close]

BLAST of MELO3C034598.jh1 vs. NCBI nr
Match: TYK26024.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 1.07e-28
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MKKG+G+IKTR SDRLRAAGITGSRKSL TGIQNLSSSSEERTE+ M +GSG KRESPGT
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRRKKY 92
          SKKRVRTETKK+E  VQKK+ +K+ V R++ Y
Sbjct: 61 SKKRVRTETKKEEATVQKKQRIKSLVSRKRVY 92

[Close]

BLAST of MELO3C034598.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DZ37 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00170 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 1.65e-32
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MKKGKG+IKTR SDRLRAAGITGSRKSLATGIQNL SSSEERTE+ M +GSG KRESPGT
Sbjct: 1  MKKGKGEIKTRTSDRLRAAGITGSRKSLATGIQNLLSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRRKKY 92
          SKKRVRTETKK+E  VQKK+ +K+ V R++ Y
Sbjct: 61 SKKRVRTETKKEEATVQKKQQIKSLVSRKRVY 92

[Close]

BLAST of MELO3C034598.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VE08 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00540 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 8.77e-31
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MKKGKG+IKTR SDRLRAAGITGSRKSLATGIQNL SSSEERTE+ M +GSG KRESPGT
Sbjct: 1  MKKGKGEIKTRTSDRLRAAGITGSRKSLATGIQNLLSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRR 89
          SKKRVRTETKK+E  VQKK+ +K+ VK R
Sbjct: 61 SKKRVRTETKKEEATVQKKQRIKSLVKSR 89

[Close]

BLAST of MELO3C034598.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SVE9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001080 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 6.90e-30
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MK+G+G+IKTR SDRLRAAGITGSRKSL TGIQNLSSSSEERTE+ M +GSG K+ESPGT
Sbjct: 1  MKRGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKKESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRRKKY 92
          SKKRVRT+TKK+E  V KK+ +K  V R++ Y
Sbjct: 61 SKKRVRTKTKKEEATVHKKQRIKCLVSRKRVY 92

[Close]

BLAST of MELO3C034598.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VJM3 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00130 PE=4 SV=1)

HSP 1 Score: 115 bits (289), Expect = 3.38e-29
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MKKG+G+IKTR SDRLRAA ITGSRKSL TGIQNLSSSSEERTE+ M +GSG KRESPGT
Sbjct: 1  MKKGRGEIKTRTSDRLRAAWITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRRKKY 92
          SKKRVRTETKK+E  VQKK+ +K+ V R++ Y
Sbjct: 61 SKKRVRTETKKEEATVQKKQRIKSLVSRKRVY 92

[Close]

BLAST of MELO3C034598.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DR12 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00300 PE=4 SV=1)

HSP 1 Score: 119 bits (297), Expect = 5.18e-29
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MKKGKGDIKTRKSDRLRAAGITGSRKSLATGIQNLSSSSEERTENTMGKGSGSKRESPGT 60
          MKKG+G+IKTR SDRLRAAGITGSRKSL TGIQNLSSSSEERTE+ M +GSG KRESPGT
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRVRTETKKDEVNVQKKKILKAKVKRRKKY 92
          SKKRVRTETKK+E  VQKK+ +K+ V R++ Y
Sbjct: 61 SKKRVRTETKKEEATVQKKQRIKSLVSRKRVY 92

The following BLAST results are available for this feature:

BLAST of MELO3C034598.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28605.1	3.41e-32	78.26	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0064135.1	1.81e-30	80.90	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0033297.1	1.42e-29	72.83	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0067554.1	6.97e-29	76.09	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK26024.1	1.07e-28	77.17	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034598.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034598.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZ37	1.65e-32	78.26	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G0...	[more]
A0A5A7VE08	8.77e-31	80.90	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00...	[more]
A0A5A7SVE9	6.90e-30	72.83	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00...	[more]
A0A5A7VJM3	3.38e-29	76.09	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00...	[more]
A0A5D3DR12	5.18e-29	77.17	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G0...	[more]

BLAST of MELO3C034598.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034598.jh1.t1	MELO3C034598.jh1.t1	mRNA