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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. AATCCCGTCGCTCGCCGCCGTCCTCCACTCTATCTTTCCGATTTCTCCTCGCCTCAATCGCCGCCGTCCTCCACCCGATCGTGCGTCGACCGTCGTGGGAAAATGGAGAGGGATGAGAAGAAGATGGTGGAGGATGGCGAATGGAGAGGGATGAGAAGAAGATGGTGGAGGACGGTGAATGGAGAGGGATGAGAAGAAGATGGTGGAGGATGGTGTGGAGAAGATG mRNA sequence AATCCCGTCGCTCGCCGCCGTCCTCCACTCTATCTTTCCGATTTCTCCTCGCCTCAATCGCCGCCGTCCTCCACCCGATCGTGCGTCGACCGTCGTGGGAAAATGGAGAGGGATGAGAAGAAGATGGAGAAGAAGATGGTGGAGGACGGTGAATGGAGAGGGATGAGAAGAAGATGGTGGAGGATGGTGTGGAGAAGATG Coding sequence (CDS) AATCCCGTCGCTCGCCGCCGTCCTCCACTCTATCTTTCCGATTTCTCCTCGCCTCAATCGCCGCCGTCCTCCACCCGATCGTGCGTCGACCGTCGTGGGAAAATGGAGAGGGATGAGAAGAAGATGGAGAAGAAGATGGTGGAGGACGGTGAATGGAGAGGGATGAGAAGAAGATGGTGGAGGATGGTGTGGAGAAGA Protein sequence NPVARRRPPLYLSDFSSPQSPPSSTRSCVDRRGKMERDEKKMEKKMVEDGEWRGMRRRWWRMVWRR
Homology
BLAST of MELO3C034588 vs. NCBI nr
Match: KAA0058315.1 (Plant transposase [Cucumis melo var. makuwa]) HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06 Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 0
Query: 2 PVARRRPPLYLSDFSSPQSPPSSTRSCVDRRGKMERDE-------KKMEKKMVEDG 51
PVARRRP YL DFSSPQS PSS SC DR GKMER+E ++ EKKMVEDG
Sbjct: 172 PVARRRPLPYLFDFSSPQSLPSSILSCADRCGKMEREEDGGRRRMERDEKKMVEDG 227
BLAST of MELO3C034588 vs. ExPASy TrEMBL
Match: A0A5A7UXH0 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006500 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06 Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 0
Query: 2 PVARRRPPLYLSDFSSPQSPPSSTRSCVDRRGKMERDE-------KKMEKKMVEDG 51
PVARRRP YL DFSSPQS PSS SC DR GKMER+E ++ EKKMVEDG
Sbjct: 172 PVARRRPLPYLFDFSSPQSLPSSILSCADRCGKMEREEDGGRRRMERDEKKMVEDG 227
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0058315.1 | 2.2e-06 | 66.07 | Plant transposase [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UXH0 | 1.1e-06 | 66.07 | Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..42 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 13..27 |
Relationships
The following mRNA feature(s) are a part of this gene:
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