MELO3C034569.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C034569.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Glial fibrillary acidic protein-like
Location	chr11: 4086150 .. 4086877 (+)
RNA-Seq Expression	MELO3C034569.jh1
Synteny	MELO3C034569.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGAATCTTTAGTTCCAAACATAGAATTGAAGAAATATCATGATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAGGAAGTCAAGAAATGGGTTCAGCAAGCTGTTATTACTCAAAGAGATTTGGACGAGGCAAAAAGAAAGCAATTGGAGCTGGAGAAGGAAAATGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGACAGAAGCTAAAAAGGTATGCATTACAGATTTGAAACATGAAATAGAAAGATTGAATGAGGTTGCTTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTTAACAGACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAGCTTATAGAAGCGGAAAGCAAAAATAGATTTTTATAAAAAGCCGTTAACAGTTCTGAAAGCCAGTTGCTGATATGTCGCAAAACAAGGAAGGTCGCAATAGATGACTACGCTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGACATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCA

mRNA sequence

ATGCCAGAATCTTTAGTTCCAAACATAGAATTGAAGAAATATCATGATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAGGAAGTCAAGAAATGGGTTCAGCAAGCTGTTATTACTCAAAGAGATTTGGACGAGGCAAAAAGAAAGCAATTGGAGCTGGAGAAGGAAAATGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGACAGAAGCTAAAAAGACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAGCTTATAGAAGCGGAAAGCAAAAATAGATTTTTATAAAAAGCCGTTAACAGTTCTGAAAGCCAGTTGCTGATATGTCGCAAAACAAGGAAGGTCGCAATAGATGACTACGCTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGACATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCA

Coding sequence (CDS)

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAGGAAGTCAAGAAATGGGTTCAGCAAGCTGTTATTACTCAAAGAGATTTGGACGAGGCAAAAAGAAAGCAATTGGAGCTGGAGAAGGAAAATGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGACAGAAGCTAAAAAGACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAG

Protein sequence

MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS

Homology

[Close]

BLAST of MELO3C034569.jh1 vs. NCBI nr
Match: TYK12200.1 (uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 6.47e-42
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAV TQRDLDEAKRK+LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS 93
          LLRNIA+LHEE EAKKT+++IEVLQHSIKEYKS
Sbjct: 61 LLRNIADLHEEMEAKKTAIEIEVLQHSIKEYKS 93

[Close]

BLAST of MELO3C034569.jh1 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 6.54e-42
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAV TQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 285 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 344

Query: 61  LLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS 93
           LLRNIANLHEE EAKKT+++IEVLQHSIKEYKS
Sbjct: 345 LLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKS 377

[Close]

BLAST of MELO3C034569.jh1 vs. NCBI nr
Match: KAA0049672.1 (uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 7.63e-42
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAV TQRDLDEAKRK+LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS 93
          LLRNIA+LHEE EAKKT+++IEVLQHSIKEYKS
Sbjct: 61 LLRNIADLHEEMEAKKTAIEIEVLQHSIKEYKS 93

[Close]

BLAST of MELO3C034569.jh1 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 1.18e-41
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAV TQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 349 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 408

Query: 61  LLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS 93
           LLRNIANLHEE EAKKT+++IEVLQHSIKEYKS
Sbjct: 409 LLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKS 441

[Close]

BLAST of MELO3C034569.jh1 vs. NCBI nr
Match: KAA0041903.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK17835.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (353), Expect = 7.92e-41
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAV TQR LD+AKRKQLELEK NDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRALDKAKRKQLELEKNNDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIANLHEETEAKK-TSMKIEVLQHSIKEYKS 93
          LLRNIA+LHEE EAKK TS+++EVL+HS+KE KS
Sbjct: 61 LLRNIADLHEEMEAKKYTSVEVEVLRHSVKECKS 94

[Close]

BLAST of MELO3C034569.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CLA9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001510 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 3.13e-42
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAV TQRDLDEAKRK+LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS 93
          LLRNIA+LHEE EAKKT+++IEVLQHSIKEYKS
Sbjct: 61 LLRNIADLHEEMEAKKTAIEIEVLQHSIKEYKS 93

[Close]

BLAST of MELO3C034569.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 3.17e-42
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAV TQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 285 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 344

Query: 61  LLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS 93
           LLRNIANLHEE EAKKT+++IEVLQHSIKEYKS
Sbjct: 345 LLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKS 377

[Close]

BLAST of MELO3C034569.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U1L8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00070 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 3.70e-42
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAV TQRDLDEAKRK+LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS 93
          LLRNIA+LHEE EAKKT+++IEVLQHSIKEYKS
Sbjct: 61 LLRNIADLHEEMEAKKTAIEIEVLQHSIKEYKS 93

[Close]

BLAST of MELO3C034569.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 5.72e-42
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAV TQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 349 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 408

Query: 61  LLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS 93
           LLRNIANLHEE EAKKT+++IEVLQHSIKEYKS
Sbjct: 409 LLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKS 441

[Close]

BLAST of MELO3C034569.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TFC7 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00940 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 3.83e-41
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAV TQR LD+AKRKQLELEK NDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRALDKAKRKQLELEKNNDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIANLHEETEAKK-TSMKIEVLQHSIKEYKS 93
          LLRNIA+LHEE EAKK TS+++EVL+HS+KE KS
Sbjct: 61 LLRNIADLHEEMEAKKYTSVEVEVLRHSVKECKS 94

The following BLAST results are available for this feature:

BLAST of MELO3C034569.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK12200.1	6.47e-42	92.47	uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa]	[more]
KAA0032013.1	6.54e-42	92.47	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0049672.1	7.63e-42	92.47	uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa]	[more]
TYK16834.1	1.18e-41	92.47	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0041903.1	7.92e-41	86.17	glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK17835.1 glia...	[more]

BLAST of MELO3C034569.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034569.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLA9	3.13e-42	92.47	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SNY0	3.17e-42	92.47	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7U1L8	3.70e-42	92.47	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3D0S2	5.72e-42	92.47	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TFC7	3.83e-41	86.17	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of MELO3C034569.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034569.jh1.t1	MELO3C034569.jh1.t1	mRNA