MELO3C034522 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034522
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Location	chr10: 22873963 .. 22874190 (-)
RNA-Seq Expression	MELO3C034522
Synteny	MELO3C034522

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATGGGTGGCGGAGGATGCATCGGAATGGTGGTGGTGAGAAGACGAGGGAGAATTGATCCTGTTGTAAACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGGGCGATGCCGAGGCCAGGGGTGGCATGACGGAACTGATTGGTAAGCATGGGATGCTTCCTCCATTCATCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGA

mRNA sequence

TTAATGGGTGGCGGAGGATGCATCGGAATGGTGGTGGTGAGAAGACGAGGGAGAATTGATCCTGTTGTAAACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGGGCGATGCCGAGGCCAGGGGTGGCATGACGGAACTGATTGGTAAGCATGGGATGCTTCCTCCATTCATCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGA

Coding sequence (CDS)

ATGGGTGGCGGAGGATGCATCGGAATGGTGGTGGTGAGAAGACGAGGGAGAATTGATCCTGTTGTAAACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGGGCGATGCCGAGGCCAGGGGTGGCATGACGGAACTGATTGGTAAGCATGGGATGCTTCCTCCATTCATCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGA

Protein sequence

MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISPPEELSRRSQRLIRH

Homology

[Close]

BLAST of MELO3C034522 vs. NCBI nr
Match: KAA0054191.1 (hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK15069.1 hypothetical protein E5676_scaffold45G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 2.4e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60
          MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

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BLAST of MELO3C034522 vs. NCBI nr
Match: KAG6597022.1 (hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 3.2e-22
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60
          MGGGG I MV+VR R R+DPV+ LLA+KVDAESNE DAEAR GM+ELIG+H MLPP + P
Sbjct: 1  MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELS RSQRLIRH
Sbjct: 61 PEELSSRSQRLIRH 74

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BLAST of MELO3C034522 vs. NCBI nr
Match: KYP52102.1 (hypothetical protein KK1_026012, partial [Cajanus cajan])

HSP 1 Score: 80.5 bits (197), Expect = 6.8e-12
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 12 VRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISPPEELSR 67
          VRRR RI+ VV+LLAD+VDA+ +EGDAE RGG+T+LI +H MLPPFI  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

[Close]

BLAST of MELO3C034522 vs. NCBI nr
Match: RDX82049.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic, partial [Mucuna pruriens])

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 12 VRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISPPEELSRRSQR 71
          VRRR RI+ VV+L  D+V+A+ +EGDA+ARGG+TELI +H MLPP I PPEEL R   R
Sbjct: 17 VRRRRRIEAVVDLFTDEVEAKGDEGDAKARGGVTELIRQHRMLPPRIPPPEELCRMFSR 75

[Close]

BLAST of MELO3C034522 vs. NCBI nr
Match: KAG4941981.1 (hypothetical protein JHK85_046627 [Glycine max] >KAG5101125.1 hypothetical protein JHK84_046094 [Glycine max])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 14 RRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISPPEELSR 67
          R G I+P+V+L AD+VD E ++GDA+ARGG+ ELIG+H MLPP I  PEELS+
Sbjct: 2  RIGSIEPIVDLFADEVDTEGDDGDAKARGGVAELIGEHRMLPPCIPSPEELSK 54

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BLAST of MELO3C034522 vs. ExPASy TrEMBL
Match: A0A5A7UKX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001210 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60
          MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of MELO3C034522 vs. ExPASy TrEMBL
Match: A0A0A0KP64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.2e-31
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60
          MGGGGCIGMVVVRRR RIDPVVNLLADKVDAESNEGDAEAR G+TELIGKHGMLPPFISP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]

BLAST of MELO3C034522 vs. ExPASy TrEMBL
Match: A0A151SBB2 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 12 VRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISPPEELSR 67
          VRRR RI+ VV+LLAD+VDA+ +EGDAE RGG+T+LI +H MLPPFI  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

[Close]

BLAST of MELO3C034522 vs. ExPASy TrEMBL
Match: A0A371FUN4 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens OX=157652 GN=ISPD PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 12 VRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISPPEELSRRSQR 71
          VRRR RI+ VV+L  D+V+A+ +EGDA+ARGG+TELI +H MLPP I PPEEL R   R
Sbjct: 17 VRRRRRIEAVVDLFTDEVEAKGDEGDAKARGGVTELIRQHRMLPPRIPPPEELCRMFSR 75

[Close]

BLAST of MELO3C034522 vs. ExPASy TrEMBL
Match: A0A498JEM2 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Malus domestica OX=3750 GN=DVH24_033078 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.8e-10
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 2  GGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISPP 61
          GGGG          G  + VV+LLADKVDAE NE DAEA  G+ ELIGKHG+LPP + PP
Sbjct: 10 GGGG----------GSDEAVVDLLADKVDAECNESDAEAGSGVAELIGKHGVLPPLVPPP 62

Query: 62 EEL 65
          EEL
Sbjct: 70 EEL 62

The following BLAST results are available for this feature:

BLAST of MELO3C034522 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054191.1	2.4e-33	100.00	hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK150...	[more]
KAG6597022.1	3.2e-22	75.68	hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KYP52102.1	6.8e-12	70.91	hypothetical protein KK1_026012, partial [Cajanus cajan]	[more]
RDX82049.1	2.2e-10	62.71	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic, partial...	[more]
KAG4941981.1	1.1e-09	62.26	hypothetical protein JHK85_046627 [Glycine max] >KAG5101125.1 hypothetical prote...	[more]

BLAST of MELO3C034522 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034522 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKX3	1.2e-33	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KP64	9.2e-31	94.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1	[more]
A0A151SBB2	3.3e-12	70.91	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 S...	[more]
A0A371FUN4	1.1e-10	62.71	4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens...	[more]
A0A498JEM2	6.8e-10	60.32	4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Malus domestica OX=3750 GN...	[more]

BLAST of MELO3C034522 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034522.1	MELO3C034522.1	mRNA