MELO3C034480 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034480
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag/pol protein
Location	chr10: 20564739 .. 20565050 (+)
RNA-Seq Expression	MELO3C034480
Synteny	MELO3C034480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGCTCGATAGTTCAATTGTTAGCTTCCGAAAAACTTAACGGCGATAACTATGCGACATGGAAATCAAATCTTAACACAATACTAGTTGCTGATGATTTACGGTTTGTCTTAACTGAGGAATGTCCTCAAACCCTGGCCTCAAATGCAAACCGAGCTAGTCGGAAAGCATATGATCGATGGATAAAAGCAAATGAGAAAGCTCGTGTCTACATTCTTGCTAGCATGTCAGATGTTTTAGCGAAGAAACATGAGTCCTTGGATAAAGGCAAAGAAAGCCCGTGCCTTCATAGGATCAGTGGGTCTTAA

mRNA sequence

ATGAATAGCTCGATAGTTCAATTGTTAGCTTCCGAAAAACTTAACGGCGATAACTATGCGACATGGAAATCAAATCTTAACACAATACTAGTTGCTGATGATTTACGGTTTGTCTTAACTGAGGAATGTCCTCAAACCCTGGCCTCAAATGCAAACCGAGCTAGTCGGAAAGCATATGATCGATGGATAAAAGCAAATGAGAAAGCTCGTGTCTACATTCTTGCTAGCATGTCAGATGTTTTAGCGAAGAAACATGAGTCCTTGGATAAAGGCAAAGAAAGCCCGTGCCTTCATAGGATCAGTGGGTCTTAA

Coding sequence (CDS)

ATGAATAGCTCGATAGTTCAATTGTTAGCTTCCGAAAAACTTAACGGCGATAACTATGCGACATGGAAATCAAATCTTAACACAATACTAGTTGCTGATGATTTACGGTTTGTCTTAACTGAGGAATGTCCTCAAACCCTGGCCTCAAATGCAAACCGAGCTAGTCGGAAAGCATATGATCGATGGATAAAAGCAAATGAGAAAGCTCGTGTCTACATTCTTGCTAGCATGTCAGATGTTTTAGCGAAGAAACATGAGTCCTTGGATAAAGGCAAAGAAAGCCCGTGCCTTCATAGGATCAGTGGGTCTTAA

Protein sequence

MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYDRWIKANEKARVYILASMSDVLAKKHESLDKGKESPCLHRISGS

Homology

[Close]

BLAST of MELO3C034480 vs. NCBI nr
Match: KAA0056365.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK29150.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
           MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD
Sbjct: 1   MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLDKGKESPCLHRISGS 104
           RWIKANEKARVYILASMSDVLAKKHESLDKGKESPCLHRISGS
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLDKGKESPCLHRISGS 103

[Close]

BLAST of MELO3C034480 vs. NCBI nr
Match: KAA0050552.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK18792.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
          MNSSIVQLLASEKLNGDNYA WKSNLNTILV DDLRF+LTEECPQT ASNANRASRKAYD
Sbjct: 1  MNSSIVQLLASEKLNGDNYAAWKSNLNTILVVDDLRFILTEECPQTTASNANRASRKAYD 60

Query: 61 RWIKANEKARVYILASMSDVLAKKHESLDKGKE 94
          RWIKANEKA VYILASM+DVLAKKHESL   K+
Sbjct: 61 RWIKANEKASVYILASMTDVLAKKHESLATTKK 93

[Close]

BLAST of MELO3C034480 vs. NCBI nr
Match: KAA0041460.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK24334.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 83/93 (89.25%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
          MNSSIVQLL+SEKLNGDNYA WKSNLNTILV DDLRFVLTEECP+T  SNANR SRKAYD
Sbjct: 1  MNSSIVQLLSSEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPETPTSNANRGSRKAYD 60

Query: 61 RWIKANEKARVYILASMSDVLAKKHESLDKGKE 94
          RWIKANEKARVYILASMSDVLAKKHESL   KE
Sbjct: 61 RWIKANEKARVYILASMSDVLAKKHESLATAKE 93

[Close]

BLAST of MELO3C034480 vs. NCBI nr
Match: KAA0035676.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-37
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
          MNSSIVQLLAS+KLNGDNYATWKSNLNTILV DDLRF+LTEECPQT  SNANRASR+AYD
Sbjct: 1  MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61 RWIKANEKARVYILASMSDVLAKKHESLDKGKE 94
          RWIKANEKARVYILASMSDVLAKKHE L   KE
Sbjct: 61 RWIKANEKARVYILASMSDVLAKKHECLATTKE 93

[Close]

BLAST of MELO3C034480 vs. NCBI nr
Match: KAA0043451.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 83/93 (89.25%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
          MNSSIVQLLAS+KLN DNYA WKSNLNTILV DDLRFVLTEECPQTLASNANR SR+AYD
Sbjct: 1  MNSSIVQLLASKKLNDDNYAAWKSNLNTILVVDDLRFVLTEECPQTLASNANRTSREAYD 60

Query: 61 RWIKANEKARVYILASMSDVLAKKHESLDKGKE 94
          RWIKANEKA VYILASMSDVLAKKHESL   KE
Sbjct: 61 RWIKANEKAHVYILASMSDVLAKKHESLATAKE 93

[Close]

BLAST of MELO3C034480 vs. ExPASy TrEMBL
Match: A0A5D3E0W1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G003020 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.5e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
           MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD
Sbjct: 1   MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60

Query: 61  RWIKANEKARVYILASMSDVLAKKHESLDKGKESPCLHRISGS 104
           RWIKANEKARVYILASMSDVLAKKHESLDKGKESPCLHRISGS
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLDKGKESPCLHRISGS 103

[Close]

BLAST of MELO3C034480 vs. ExPASy TrEMBL
Match: A0A5D3D5J6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00050 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.2e-38
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
          MNSSIVQLLASEKLNGDNYA WKSNLNTILV DDLRF+LTEECPQT ASNANRASRKAYD
Sbjct: 1  MNSSIVQLLASEKLNGDNYAAWKSNLNTILVVDDLRFILTEECPQTTASNANRASRKAYD 60

Query: 61 RWIKANEKARVYILASMSDVLAKKHESLDKGKE 94
          RWIKANEKA VYILASM+DVLAKKHESL   K+
Sbjct: 61 RWIKANEKASVYILASMTDVLAKKHESLATTKK 93

[Close]

BLAST of MELO3C034480 vs. ExPASy TrEMBL
Match: A0A5D3DL59 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001080 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.2e-38
Identity = 83/93 (89.25%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
          MNSSIVQLL+SEKLNGDNYA WKSNLNTILV DDLRFVLTEECP+T  SNANR SRKAYD
Sbjct: 1  MNSSIVQLLSSEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPETPTSNANRGSRKAYD 60

Query: 61 RWIKANEKARVYILASMSDVLAKKHESLDKGKE 94
          RWIKANEKARVYILASMSDVLAKKHESL   KE
Sbjct: 61 RWIKANEKARVYILASMSDVLAKKHESLATAKE 93

[Close]

BLAST of MELO3C034480 vs. ExPASy TrEMBL
Match: A0A5A7T0E9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00680 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
          MNSSIVQLLAS+KLNGDNYATWKSNLNTILV DDLRF+LTEECPQT  SNANRASR+AYD
Sbjct: 1  MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61 RWIKANEKARVYILASMSDVLAKKHESLDKGKE 94
          RWIKANEKARVYILASMSDVLAKKHE L   KE
Sbjct: 61 RWIKANEKARVYILASMSDVLAKKHECLATTKE 93

[Close]

BLAST of MELO3C034480 vs. ExPASy TrEMBL
Match: A0A5D3BBF3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00820 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 83/93 (89.25%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MNSSIVQLLASEKLNGDNYATWKSNLNTILVADDLRFVLTEECPQTLASNANRASRKAYD 60
          MNS IVQLLASEKLN DNY TWKSNLNTILV DDLRFVLTEECPQTLASNANR SR+AYD
Sbjct: 1  MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTLASNANRTSREAYD 60

Query: 61 RWIKANEKARVYILASMSDVLAKKHESLDKGKE 94
          RWIKANEKARVYIL+SMSDVLAKKHESL   KE
Sbjct: 61 RWIKANEKARVYILSSMSDVLAKKHESLATAKE 93

The following BLAST results are available for this feature:

BLAST of MELO3C034480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056365.1	1.1e-49	100.00	gag/pol protein [Cucumis melo var. makuwa] >TYK29150.1 gag/pol protein [Cucumis ...	[more]
KAA0050552.1	1.7e-37	89.25	gag/pol protein [Cucumis melo var. makuwa] >TYK18792.1 gag/pol protein [Cucumis ...	[more]
KAA0041460.1	1.7e-37	89.25	gag/pol protein [Cucumis melo var. makuwa] >TYK24334.1 gag/pol protein [Cucumis ...	[more]
KAA0035676.1	2.2e-37	89.25	gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis ...	[more]
KAA0043451.1	3.8e-37	89.25	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0W1	5.5e-50	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G0030...	[more]
A0A5D3D5J6	8.2e-38	89.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G0005...	[more]
A0A5D3DL59	8.2e-38	89.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G0010...	[more]
A0A5A7T0E9	1.1e-37	89.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0068...	[more]
A0A5D3BBF3	1.8e-37	89.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G0082...	[more]

BLAST of MELO3C034480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 4..88
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 4..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034480.1	MELO3C034480.1	mRNA