MELO3C034477 (gene) Melon (DHL92) v4

Overview
NameMELO3C034477
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein FAR1-RELATED SEQUENCE 4-like
Locationchr10: 20181417 .. 20181789 (-)
RNA-Seq ExpressionMELO3C034477
SyntenyMELO3C034477
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAGTGTTGGTTTTGAGAAGTGGTCTCAGACATATTCATGTAAACGAAGGTAAAGAATGATGACATCAAATTGTGCAGAAAGTGTAAATTCAGTGTTTAAAGATCTTAAAGAACTACTTGTGGCTACGATGCTTAGTTCAATTAGGAATGTATTGCAAAAGTGGTTTTATGAACAAAGTAAAGTTGCTTCTACAATGAAGAGTCGTTTGAAGTCTTGGGCTGAGAACGTTCTGCGTTTAAAACATGAAAAGTCGAGAAGATTATTGGTAAGATTTTTTTTATCTCGGACAGTTAGAGTAGATTGCTATCTTTTTCTATCCGATAGATAAAGATAGCAATTTTTCTATTCCTGTCTCAGATAAGCACAGATAG

mRNA sequence

AGTAGTGTTGGTTTTGAGAAGTGGTCTCAGACATATTCATGTAAACGAAGGTAAAGAATGATGACATCAAATTGTGCAGAAAGTGTAAATTCAGTGTTTAAAGATCTTAAAGAACTACTTGTGGCTACGATGCTTAGTTCAATTAGGAATGTATTGCAAAAGTGGTTTTATGAACAAAGTAAAGTTGCTTCTACAATGAAGAGTCGTTTGAAGTCTTGGGCTGAGAACGTTCTGCGTTTAAAACATGAAAAGTCGAGAAGATTATTGATTGCTATCTTTTTCTATCCGATAGATAAAGATAGCAATTTTTCTATTCCTGTCTCAGATAAGCACAGATAG

Coding sequence (CDS)

ATGATGACATCAAATTGTGCAGAAAGTGTAAATTCAGTGTTTAAAGATCTTAAAGAACTACTTGTGGCTACGATGCTTAGTTCAATTAGGAATGTATTGCAAAAGTGGTTTTATGAACAAAGTAAAGTTGCTTCTACAATGAAGAGTCGTTTGAAGTCTTGGGCTGAGAACGTTCTGCGTTTAAAACATGAAAAGTCGAGAAGATTATTGATTGCTATCTTTTTCTATCCGATAGATAAAGATAGCAATTTTTCTATTCCTGTCTCAGATAAGCACAGATAG

Protein sequence

MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLRLKHEKSRRLLIAIFFYPIDKDSNFSIPVSDKHR
Homology
[Close]
BLAST of MELO3C034477 vs. NCBI nr
Match: KAA0037108.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK13969.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 5.3e-22
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           +MTSNCAESVNSVFKDL+EL VATML SIR+VLQKWFYE+SK ASTMKS L  WAEN+LR
Sbjct: 265 IMTSNCAESVNSVFKDLRELPVATMLCSIRDVLQKWFYERSKAASTMKSYLTYWAENILR 324

Query: 61  LKHEKSRRLLI 72
           L+HEKSRRLL+
Sbjct: 325 LEHEKSRRLLV 335

[Close]
BLAST of MELO3C034477 vs. NCBI nr
Match: KAA0033561.1 (uncharacterized protein E6C27_scaffold261G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-20
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           MMTSNCAES++SVFKDL+EL VATML SIR+VLQKWFY +SK ASTMK+ L SWAEN+L 
Sbjct: 217 MMTSNCAESLDSVFKDLRELPVATMLCSIRDVLQKWFYGRSKAASTMKNHLTSWAENILC 276

Query: 61  LKHEKSRRLLI 72
           L+HEKSRRLL+
Sbjct: 277 LEHEKSRRLLV 287

[Close]
BLAST of MELO3C034477 vs. NCBI nr
Match: TYJ95626.1 (uncharacterized protein E5676_scaffold104G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-20
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           MMTSNCAES++SVFKDL+EL VATML SIR+VLQKWFY +SK ASTMK+ L SWAEN+L 
Sbjct: 227 MMTSNCAESLDSVFKDLRELPVATMLCSIRDVLQKWFYGRSKAASTMKNHLTSWAENILC 286

Query: 61  LKHEKSRRLLI 72
           L+HEKSRRLL+
Sbjct: 287 LEHEKSRRLLV 297

[Close]
BLAST of MELO3C034477 vs. NCBI nr
Match: KAA0040149.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-19
Identity = 56/92 (60.87%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           MMTSNCAESV+SVFKDL+EL VATML SI++VLQKWFYE+SK A TMKS L  WAEN+L 
Sbjct: 193 MMTSNCAESVHSVFKDLRELPVATMLCSIKDVLQKWFYERSKAAFTMKSHLTCWAENILH 252

Query: 61  LKHEKSRRLLIAIFFYPIDKDSNFSIPVSDKH 93
                              KDSN S+PVSD+H
Sbjct: 253 -------------------KDSNLSVPVSDRH 265

[Close]
BLAST of MELO3C034477 vs. NCBI nr
Match: XP_038907134.1 (uncharacterized protein LOC120092945 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           MMT+N +ES++SV ++ +E  +A++L SIR +LQ WFYE+SK+AS+MK+ L SWAEN LR
Sbjct: 498 MMTTNISESLSSVLEESREFPIASLLDSIRQLLQDWFYERSKLASSMKTVLTSWAENELR 557

Query: 61  LKHEKSRRLLIAIF----FYPIDKDSNFSIPVSDK 92
            +H +SR   +       +  +D D+++ + V  K
Sbjct: 558 DQHNQSRNFKVDSINNEEYKVVDGDNHYVVNVISK 592

[Close]
BLAST of MELO3C034477 vs. ExPASy TrEMBL
Match: A0A5A7T2U4 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001730 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.6e-22
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           +MTSNCAESVNSVFKDL+EL VATML SIR+VLQKWFYE+SK ASTMKS L  WAEN+LR
Sbjct: 265 IMTSNCAESVNSVFKDLRELPVATMLCSIRDVLQKWFYERSKAASTMKSYLTYWAENILR 324

Query: 61  LKHEKSRRLLI 72
           L+HEKSRRLL+
Sbjct: 325 LEHEKSRRLLV 335

[Close]
BLAST of MELO3C034477 vs. ExPASy TrEMBL
Match: A0A5A7SVW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G001160 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           MMTSNCAES++SVFKDL+EL VATML SIR+VLQKWFY +SK ASTMK+ L SWAEN+L 
Sbjct: 217 MMTSNCAESLDSVFKDLRELPVATMLCSIRDVLQKWFYGRSKAASTMKNHLTSWAENILC 276

Query: 61  LKHEKSRRLLI 72
           L+HEKSRRLL+
Sbjct: 277 LEHEKSRRLLV 287

[Close]
BLAST of MELO3C034477 vs. ExPASy TrEMBL
Match: A0A5D3B9S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00450 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           MMTSNCAES++SVFKDL+EL VATML SIR+VLQKWFY +SK ASTMK+ L SWAEN+L 
Sbjct: 227 MMTSNCAESLDSVFKDLRELPVATMLCSIRDVLQKWFYGRSKAASTMKNHLTSWAENILC 286

Query: 61  LKHEKSRRLLI 72
           L+HEKSRRLL+
Sbjct: 287 LEHEKSRRLLV 297

[Close]
BLAST of MELO3C034477 vs. ExPASy TrEMBL
Match: A0A5A7TFW3 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2764G00030 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.5e-19
Identity = 56/92 (60.87%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           MMTSNCAESV+SVFKDL+EL VATML SI++VLQKWFYE+SK A TMKS L  WAEN+L 
Sbjct: 193 MMTSNCAESVHSVFKDLRELPVATMLCSIKDVLQKWFYERSKAAFTMKSHLTCWAENILH 252

Query: 61  LKHEKSRRLLIAIFFYPIDKDSNFSIPVSDKH 93
                              KDSN S+PVSD+H
Sbjct: 253 -------------------KDSNLSVPVSDRH 265

[Close]
BLAST of MELO3C034477 vs. ExPASy TrEMBL
Match: A0A5A7T3G5 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00710 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 1   MMTSNCAESVNSVFKDLKELLVATMLSSIRNVLQKWFYEQSKVASTMKSRLKSWAENVLR 60
           MMT+N +ES+N+V K+ ++L VA +L SIR +LQ WFY++ KVA  M++ L SWAE  LR
Sbjct: 504 MMTTNISESLNAVLKESRDLPVAALLDSIRQILQNWFYDRRKVACCMRTVLTSWAEGELR 563

Query: 61  LKHEKSRRLLI 72
           ++H+ SR   +
Sbjct: 564 IQHQNSRSFTV 574

The following BLAST results are available for this feature:
BLAST of MELO3C034477 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037108.15.3e-2281.69protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK13969.1 prot... [more]
KAA0033561.12.2e-2077.46uncharacterized protein E6C27_scaffold261G001160 [Cucumis melo var. makuwa][more]
TYJ95626.12.2e-2077.46uncharacterized protein E5676_scaffold104G00450 [Cucumis melo var. makuwa][more]
KAA0040149.19.4e-1960.87protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa][more]
XP_038907134.13.2e-1143.16uncharacterized protein LOC120092945 [Benincasa hispida][more]
BLAST of MELO3C034477 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034477 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T2U42.6e-2281.69Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SVW41.1e-2077.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3B9S01.1e-2077.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TFW34.5e-1960.87Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7T3G52.3e-1049.30Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of MELO3C034477 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034477.1MELO3C034477.1mRNA