MELO3C034476 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034476
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr04: 26520756 .. 26521860 (+)
RNA-Seq Expression	MELO3C034476
Synteny	MELO3C034476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTATCATGCCTATTTTATTTTGGAGTTTAATGGTGAAATTACTTACGTACTCCATGTATTTTTTCTAATTTCTCATTCTCAGTATGTCAACCTCAAATCATGCCCCGAGACATGTTTGGACGAAGGAGAAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGAGATGGAAATCAGATAATGGTACGTTCCGTCCAGGATACCTTGCACAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTATAGGATCAAAACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGACCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGGTATGGAATATAATTTAAACGTCATACAACGTTCACAATGTACATTTAGTTAACAATTTTTCAATCAGTACTCATACGTGATTTTTTTTTTTGCCCGCAGTCGCATCCTGCAGCGAAGGGACTCCTAAACAAACCATTCCCGTATTACGACGAACTTACATATGTATTCGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGTGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTTACAGCCAGGGAATTGACCTCTCGCAGGACGATGTATGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACTGGATCAAGTGGATCGAAGAGAAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATAACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATATCGAGATAG

mRNA sequence

TTTGTATCATGCCTATTTTATTTTGGAGTTTAATGGTGAAATTACTTACGTACTCCATGTATTTTTTCTAATTTCTCATTCTCAGTATGTCAACCTCAAATCATGCCCCGAGACATGTTTGGACGAAGGAGAAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGAGATGGAAATCAGATAATGGTACGTTCCGTCCAGGATACCTTGCACAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTATAGGATCAAAACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGACCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTAAACAAACCATTCCCGTATTACGACGAACTTACATATGTATTCGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGTGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTTACAGCCAGGGAATTGACCTCTCGCAGGACGATGTATGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACTGGATCAAGTGGATCGAAGAGAAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATAACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATATCGAGATAG

Coding sequence (CDS)

TTGTATCATGCCTATTTTATTTTGGAGTTTAATGGTGAAATTACTTACGTACTCCATGTATTTTTTCTAATTTCTCATTCTCAGTATGTCAACCTCAAATCATGCCCCGAGACATGTTTGGACGAAGGAGAAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGAGATGGAAATCAGATAATGGTACGTTCCGTCCAGGATACCTTGCACAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTATAGGATCAAAACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGACCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTAAACAAACCATTCCCGTATTACGACGAACTTACATATGTATTCGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGTGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTTACAGCCAGGGAATTGACCTCTCGCAGGACGATGTATGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACTGGATCAAGTGGATCGAAGAGAAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATAACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATATCGAGAT

Protein sequence

LYHAYFILEFNGEITYVLHVFFLISHSQYVNLKSCPETCLDEGEGGDSCGMFNGASVNGRWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTTFGVSYSCLRMRGRDFVESSYETYRD

Homology

[Close]

BLAST of MELO3C034476 vs. NCBI nr
Match: KAA0053666.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 644.4 bits (1661), Expect = 5.3e-181
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0


Query: 29  YVNLKSCPETCLDEGEGGDSCGMFNGASVNGRWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 88
           YVNLKSCPETCLDEGEGGDSCGMFNGASVNGRWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 213 YVNLKSCPETCLDEGEGGDSCGMFNGASVNGRWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 272

Query: 89  VRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 148
           VRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG
Sbjct: 273 VRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 332

Query: 149 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVTARE 208
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVTARE
Sbjct: 333 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVTARE 392

Query: 209 LTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTSNSGRLRSGQH 268
           LTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTSNSGRLRSGQH
Sbjct: 393 LTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTSNSGRLRSGQH 452

Query: 269 ATLQITTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTTFGVSYSCLRMRGRDFVESS 328
           ATLQITTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTTFGVSYSCLRMRGRDFVESS
Sbjct: 453 ATLQITTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTTFGVSYSCLRMRGRDFVESS 512

Query: 329 YETYRD 335
           YETYRD
Sbjct: 513 YETYRD 518

[Close]

BLAST of MELO3C034476 vs. NCBI nr
Match: KAA0054568.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 468.8 bits (1205), Expect = 4.0e-128
Identity = 234/275 (85.09%), Postives = 240/275 (87.27%), Query Frame = 0


Query: 59  GRWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACS 118
           G WKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVID RIKTLKRTFQAI EMRDPACS
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAITEMRDPACS 90

Query: 119 GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 178
           GF WNDEEKCIIAEKELF NWVRSHPAAKGLLNKPF YYDELTYVFGRDRATGRFA    
Sbjct: 91  GFEWNDEEKCIIAEKELFHNWVRSHPAAKGLLNKPFSYYDELTYVFGRDRATGRFAWGLT 150

Query: 179 DVGSNEPGGGYDRFDM--GDGNEDFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRE 238
            + +       D  D+  G       P TARELTSRRTMYVHPDLLALQRVG +QVDRR 
Sbjct: 151 SLVA-------DMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPNQVDRRR 210

Query: 239 RGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIG 298
           RG+VSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ+ TTCARNF AYCVRCQNLRVWIG
Sbjct: 211 RGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMITTCARNFFAYCVRCQNLRVWIG 270

Query: 299 RYCKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET 332
           RYCKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET
Sbjct: 271 RYCKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET 298

[Close]

BLAST of MELO3C034476 vs. NCBI nr
Match: KAA0047893.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 466.5 bits (1199), Expect = 2.0e-127
Identity = 225/253 (88.93%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 79  MMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDN 138
           MMAEKLPGCQVRATT+ID RIKTLKRTFQAIAEMR PACSGFGWNDEEKCI+ EKELFDN
Sbjct: 1   MMAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVVEKELFDN 60

Query: 139 WVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN 198
           WVRSHPAAK LLNKPFPYYDELTYVFGRDRA GRFAETFADVGSNEPGGGYDRFDMGDGN
Sbjct: 61  WVRSHPAAKRLLNKPFPYYDELTYVFGRDRAIGRFAETFADVGSNEPGGGYDRFDMGDGN 120

Query: 199 EDFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTS 258
           EDF PV ++ +   +    HPDLLALQRVG DQVDRR RGEV+ETSSLKRYIWRSTKQTS
Sbjct: 121 EDFQPVYSQGVDISQD--DHPDLLALQRVGPDQVDRRGRGEVNETSSLKRYIWRSTKQTS 180

Query: 259 NSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTTFGVSYSCLR 318
           NSGRLRSGQHATLQ+TTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWT FGVSYSCLR
Sbjct: 181 NSGRLRSGQHATLQMTTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTAFGVSYSCLR 240

Query: 319 MRGRDFVESSYET 332
           M+GRD VESSYET
Sbjct: 241 MKGRDSVESSYET 251

[Close]

BLAST of MELO3C034476 vs. NCBI nr
Match: KAA0048405.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 462.2 bits (1188), Expect = 3.7e-126
Identity = 228/273 (83.52%), Postives = 232/273 (84.98%), Query Frame = 0


Query: 59  GRWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACS 118
           G WKSDNGTFRP  L                         IKTLKRTFQAIAEMR P CS
Sbjct: 31  GGWKSDNGTFRPDTLRSW----------------------IKTLKRTFQAIAEMRGPTCS 90

Query: 119 GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 178
           GFGWNDEEKCI+AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA
Sbjct: 91  GFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 179 DVGSNEPGGGYDRFDMGDGNEDFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRERG 238
           DVGSNEPGGGYDRFDMG   +   P TARELTSRRTMYVHPDLLALQRVG DQVDRR RG
Sbjct: 151 DVGSNEPGGGYDRFDMGMETKTSRPCTARELTSRRTMYVHPDLLALQRVGSDQVDRRGRG 210

Query: 239 EVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIGRY 298
           EVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ+TTTCARNFSAYCVRCQNLRVWIGRY
Sbjct: 211 EVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMTTTCARNFSAYCVRCQNLRVWIGRY 270

Query: 299 CKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET 332
           CKGIFCLVWTTFGVSYSCL M+GRD VESSYET
Sbjct: 271 CKGIFCLVWTTFGVSYSCLMMKGRDSVESSYET 281

[Close]

BLAST of MELO3C034476 vs. NCBI nr
Match: KAA0045008.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 438.3 bits (1126), Expect = 5.8e-119
Identity = 216/275 (78.55%), Postives = 230/275 (83.64%), Query Frame = 0


Query: 59  GRWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACS 118
           G WKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVID RIKTLKRTFQAIAEMR PAC 
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACI 90

Query: 119 GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 178
           GFGWNDEEKCI+AEKEL DNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA
Sbjct: 91  GFGWNDEEKCIVAEKELCDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 179 DVGSNEPGGGYDRFDMGDGNEDFPPVTAR--ELTSRRTMYVHPDLLALQRVGLDQVDRRE 238
           DVGSNEPGGGYDRFDMGDGNEDFPPV ++  +++        P   +  R G     +R+
Sbjct: 151 DVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTG-SSGSKRK 210

Query: 239 RGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIG 298
           +G   +      ++        NSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIG
Sbjct: 211 KGSQRDFDVEAIHL-----ALGNSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIG 270

Query: 299 RYCKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET 332
           RYCKGIFCLVWTTFGVSYSCLRM+GRD VESSYET
Sbjct: 271 RYCKGIFCLVWTTFGVSYSCLRMKGRDSVESSYET 299

[Close]

BLAST of MELO3C034476 vs. ExPASy TrEMBL
Match: A0A5A7UHF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00380 PE=4 SV=1)

HSP 1 Score: 644.4 bits (1661), Expect = 2.6e-181
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0


Query: 29  YVNLKSCPETCLDEGEGGDSCGMFNGASVNGRWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 88
           YVNLKSCPETCLDEGEGGDSCGMFNGASVNGRWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 213 YVNLKSCPETCLDEGEGGDSCGMFNGASVNGRWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 272

Query: 89  VRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 148
           VRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG
Sbjct: 273 VRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 332

Query: 149 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVTARE 208
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVTARE
Sbjct: 333 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVTARE 392

Query: 209 LTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTSNSGRLRSGQH 268
           LTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTSNSGRLRSGQH
Sbjct: 393 LTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTSNSGRLRSGQH 452

Query: 269 ATLQITTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTTFGVSYSCLRMRGRDFVESS 328
           ATLQITTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTTFGVSYSCLRMRGRDFVESS
Sbjct: 453 ATLQITTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTTFGVSYSCLRMRGRDFVESS 512

Query: 329 YETYRD 335
           YETYRD
Sbjct: 513 YETYRD 518

[Close]

BLAST of MELO3C034476 vs. ExPASy TrEMBL
Match: A0A5A7UHW5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003600 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.9e-128
Identity = 234/275 (85.09%), Postives = 240/275 (87.27%), Query Frame = 0


Query: 59  GRWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACS 118
           G WKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVID RIKTLKRTFQAI EMRDPACS
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAITEMRDPACS 90

Query: 119 GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 178
           GF WNDEEKCIIAEKELF NWVRSHPAAKGLLNKPF YYDELTYVFGRDRATGRFA    
Sbjct: 91  GFEWNDEEKCIIAEKELFHNWVRSHPAAKGLLNKPFSYYDELTYVFGRDRATGRFAWGLT 150

Query: 179 DVGSNEPGGGYDRFDM--GDGNEDFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRE 238
            + +       D  D+  G       P TARELTSRRTMYVHPDLLALQRVG +QVDRR 
Sbjct: 151 SLVA-------DMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQRVGPNQVDRRR 210

Query: 239 RGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIG 298
           RG+VSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ+ TTCARNF AYCVRCQNLRVWIG
Sbjct: 211 RGKVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMITTCARNFFAYCVRCQNLRVWIG 270

Query: 299 RYCKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET 332
           RYCKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET
Sbjct: 271 RYCKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET 298

[Close]

BLAST of MELO3C034476 vs. ExPASy TrEMBL
Match: A0A5A7TWD3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001700 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 9.6e-128
Identity = 225/253 (88.93%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 79  MMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDN 138
           MMAEKLPGCQVRATT+ID RIKTLKRTFQAIAEMR PACSGFGWNDEEKCI+ EKELFDN
Sbjct: 1   MMAEKLPGCQVRATTIIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVVEKELFDN 60

Query: 139 WVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN 198
           WVRSHPAAK LLNKPFPYYDELTYVFGRDRA GRFAETFADVGSNEPGGGYDRFDMGDGN
Sbjct: 61  WVRSHPAAKRLLNKPFPYYDELTYVFGRDRAIGRFAETFADVGSNEPGGGYDRFDMGDGN 120

Query: 199 EDFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTS 258
           EDF PV ++ +   +    HPDLLALQRVG DQVDRR RGEV+ETSSLKRYIWRSTKQTS
Sbjct: 121 EDFQPVYSQGVDISQD--DHPDLLALQRVGPDQVDRRGRGEVNETSSLKRYIWRSTKQTS 180

Query: 259 NSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTTFGVSYSCLR 318
           NSGRLRSGQHATLQ+TTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWT FGVSYSCLR
Sbjct: 181 NSGRLRSGQHATLQMTTTCARNFSAYCVRCQNLRVWIGRYCKGIFCLVWTAFGVSYSCLR 240

Query: 319 MRGRDFVESSYET 332
           M+GRD VESSYET
Sbjct: 241 MKGRDSVESSYET 251

[Close]

BLAST of MELO3C034476 vs. ExPASy TrEMBL
Match: A0A5A7U437 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001310 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.8e-126
Identity = 228/273 (83.52%), Postives = 232/273 (84.98%), Query Frame = 0


Query: 59  GRWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACS 118
           G WKSDNGTFRP  L                         IKTLKRTFQAIAEMR P CS
Sbjct: 31  GGWKSDNGTFRPDTLRSW----------------------IKTLKRTFQAIAEMRGPTCS 90

Query: 119 GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 178
           GFGWNDEEKCI+AEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA
Sbjct: 91  GFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 179 DVGSNEPGGGYDRFDMGDGNEDFPPVTARELTSRRTMYVHPDLLALQRVGLDQVDRRERG 238
           DVGSNEPGGGYDRFDMG   +   P TARELTSRRTMYVHPDLLALQRVG DQVDRR RG
Sbjct: 151 DVGSNEPGGGYDRFDMGMETKTSRPCTARELTSRRTMYVHPDLLALQRVGSDQVDRRGRG 210

Query: 239 EVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIGRY 298
           EVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQ+TTTCARNFSAYCVRCQNLRVWIGRY
Sbjct: 211 EVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMTTTCARNFSAYCVRCQNLRVWIGRY 270

Query: 299 CKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET 332
           CKGIFCLVWTTFGVSYSCL M+GRD VESSYET
Sbjct: 271 CKGIFCLVWTTFGVSYSCLMMKGRDSVESSYET 281

[Close]

BLAST of MELO3C034476 vs. ExPASy TrEMBL
Match: A0A5A7TQ37 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003200 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.8e-119
Identity = 216/275 (78.55%), Postives = 230/275 (83.64%), Query Frame = 0


Query: 59  GRWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPACS 118
           G WKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVID RIKTLKRTFQAIAEMR PAC 
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACI 90

Query: 119 GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 178
           GFGWNDEEKCI+AEKEL DNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA
Sbjct: 91  GFGWNDEEKCIVAEKELCDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 179 DVGSNEPGGGYDRFDMGDGNEDFPPVTAR--ELTSRRTMYVHPDLLALQRVGLDQVDRRE 238
           DVGSNEPGGGYDRFDMGDGNEDFPPV ++  +++        P   +  R G     +R+
Sbjct: 151 DVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTG-SSGSKRK 210

Query: 239 RGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIG 298
           +G   +      ++        NSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIG
Sbjct: 211 KGSQRDFDVEAIHL-----ALGNSGRLRSGQHATLQITTTCARNFSAYCVRCQNLRVWIG 270

Query: 299 RYCKGIFCLVWTTFGVSYSCLRMRGRDFVESSYET 332
           RYCKGIFCLVWTTFGVSYSCLRM+GRD VESSYET
Sbjct: 271 RYCKGIFCLVWTTFGVSYSCLRMKGRDSVESSYET 299

[Close]

BLAST of MELO3C034476 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-10
Identity = 58/235 (24.68%), Postives = 98/235 (41.70%), Query Frame = 0


Query: 57  VNGRWKSDNGTFRPGYLAQLVRMMAE-KLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDP 116
           +N  W+  NGT     L    + M E     C+ +       R+K LK  +Q+  +++  
Sbjct: 33  INNNWRDSNGTI--SKLTVETKFMPEINKEFCRSKNYNHYLSRMKYLKIQYQSCLDLQ-R 92

Query: 117 ACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAE 176
             SGFGW+   K   A  E++ +++++HP  K L    F ++DEL  +FG   ATG+ A 
Sbjct: 93  FSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAI 152

Query: 177 TFAD--------VGSNEPGGGYDRFD--------------------MGDGNEDFPPVTAR 236
              D         G N      D FD                    M  G  + P +  R
Sbjct: 153 GLCDSTDGLTYRAGENPRKEYVDDFDNVYEYDTTTHHESSEHYAPFMSHGTSESPKLPPR 212

Query: 237 ELT-SRRTMYVHPD--LLALQRVGLDQVDRRERGEVSETSSLKRYIWRSTKQTSN 260
           + T S R+     +  ++ +    LD + +RE  + +E +  K  +W + K+ S+
Sbjct: 213 KRTRSERSTSQKEESPMMVVSSKILDIIQQREERQQNEVAQKKNNVWDAIKEISD 264

[Close]

BLAST of MELO3C034476 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-07
Identity = 22/80 (27.50%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 94  VIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKP 153
           V+  R K L+R +  I  + +   +GF W+     +IA+ ++++ ++++HP A+    K 
Sbjct: 377 VLKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKT 436

Query: 154 FPYYDELTYVFGRDRATGRF 174
            P Y  L ++FG++ + GR+
Sbjct: 437 IPSYPNLCFIFGKETSDGRY 454

[Close]

BLAST of MELO3C034476 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-07
Identity = 21/72 (29.17%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 94  VIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKP 153
           V+  R K+L+R F AI  +      GF W++E + + A+  ++ +++++H  A+  + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 154 FPYYDELTYVFG 166
            PYY +L  + G
Sbjct: 296 IPYYKDLCVLCG 305

[Close]

BLAST of MELO3C034476 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-07
Identity = 21/72 (29.17%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 94  VIDYRIKTLKRTFQAIAEMRDPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKP 153
           V+  R K+L+R F AI  +      GF W++E + + A+  ++ +++++H  A+  + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 154 FPYYDELTYVFG 166
            PYY +L  + G
Sbjct: 296 IPYYKDLCVLCG 305

The following BLAST results are available for this feature:

BLAST of MELO3C034476 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053666.1	5.3e-181	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon p...	[more]
KAA0054568.1	4.0e-128	85.09	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047893.1	2.0e-127	88.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048405.1	3.7e-126	83.52	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0045008.1	5.8e-119	78.55	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034476 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHF7	2.6e-181	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UHW5	1.9e-128	85.09	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TWD3	9.6e-128	88.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U437	1.8e-126	83.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TQ37	2.8e-119	78.55	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C034476 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	1.2e-10	24.68	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	1.3e-07	27.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	6.4e-07	29.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	6.4e-07	29.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 57..183
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 57..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034476.1	MELO3C034476.1	mRNA