MELO3C034457 (gene) Melon (DHL92) v4

Overview
NameMELO3C034457
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Locationchr10: 18570660 .. 18572311 (-)
RNA-Seq ExpressionMELO3C034457
SyntenyMELO3C034457
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTTTAGTTTCAAGAACTTTTATTAGCAATCATTTCTTTTGGTCCGACATCCTAACTTGCCACCAAGCTACTGTAAAAAGTAAGAGTAAATTTATATATATATATATATATTTTGCAAGTTAAATTGGTGAGTTCCTTACCCTTTTTCTTGGTTCTTGGCTTAAAACTAGTATATTAAAATTTTCAGTTAGTAAAAAATTTTCATTTTTCTTCACTTGGATGACTTTTTTTGCTTTTTTAAACTTCTGCCAATCTATGAAGTATCATGCTATGTAAGTTTCATTATCATCTAATTTTAACATTTATGAATAGTGATAAACTAAATTAAAAATTATAAGACGATAAGATACAAAACTAGGACTTTTCAATTTAAGCCATTAAAGATTTGCTTATGTGTTGTATGTCAATGATGATGTTTTCTTGTACTATGGTTTTCAGTGAAAAACAAGGATTATTTGGATCAATATATTGTCTACTCTATTTTTTGAGTTGAATTTGATAGAAGAGGAACTACAACAGATCTTTGATAGCAACACTTCCCAATCCTCATGGTAAGAAAGTTTTGAGATTTACTTATTTTGCAACTGCATTTTATATATTATTTGAACTTTTGTAGTTACTTTCTGATGTAAATGTTGGGTTTTATGTCCTAAAACTCGTAGATAGTAGATATAATCAATTGACCGTCATTAATAAAGTGTTTTATTATTATAATTTCAATAAGTGTTATTGATTATATTATTAGTTTTGTCTTAACAACCTAAATCCAATAAACTAACATCATAAGCTGTTTGATGAGTCTTGAACAGTATGTAGAGACATACGGGGATCAATGTTCAAGATCAGCTTAAAGGGTCTATAATATAGGATTAAGGTTGGGTACCTTATCCTGTTAACACTATGGATACGACTCACTTTGTATTTGATACAAACACATTGATCCAATGCGTTCATGTATGCAACATGCGAGTGAGGGTATCCTATGCAATGAGTTTGCATAAGACTGGCCATTAAATAGTAATCACTAGATGTAACTCCGTTAACTAGTTGGATTTCTATTTCATTAGGATGACCTAGGTGACTTAGTCTTAATCCTGAGTGTATTATGAACTCTTGTTTGCGAGGGATTGTCCTTTGATTTGTACGGGTAAGAGTGGTCAAATTGCCGACTCAATATGCTTATCATTTTGGGGGACAAGACTGAGTGGGGAGCTAGGAACATAATCACACAAGATGGAATTCACTCATTCCCACCTTTAGGGTAAGTAGATAAGTGTTCCTTTAAATGGTGTCTCCGGGATTTGAACAAAGGGTCCTACTCTCTCGAAAGGGGTTTCTGTTTAGTGATTGGACCATAAACATGTTGTTCATTAGAGAAGTACTGGTATTTAGGGACTAGAAGTAACCCAGGGGTAAAACGGTAATCTGACCTAGCTGGTGTTACGAACACTTATGAAGGACTAACTTACTGGTATTTGTCTATATCCGTGAACACAGAAATATATCTACAGTGAGAAAAGTTCAGCTGTAAGTCTTTAGTGGAGTGTACACACAATTAACGAATATTGATTAATGTGGTTAATGAGTTTAGCTAATTAATCTCATATCGTTGTAGCTTCTGATCTGTAGGTCTATTAGGTCCCTTTTCTAG

mRNA sequence

AGCTTTAGTTTCAAGAACTTTTATTAGCAATCATTTCTTTTGGTCCGACATCCTAACTTGCCACCAAGCTACTAAGAGGAACTACAACAGATCTTTGATAGCAACACTTCCCAATCCTCATGAGTGGTCAAATTGCCGACTCAATATGCTTATCATTTTGGGGGACAAGACTGAGTGGGGAGCTAGGAACATAATCACACAAGATGGAATTCACTCATTCCCACCTTTAGGGTCTATTAGGTCCCTTTTCTAG

Coding sequence (CDS)

GCTTTAGTTTCAAGAACTTTTATTAGCAATCATTTCTTTTGGTCCGACATCCTAACTTGCCACCAAGCTACTAAGAGGAACTACAACAGATCTTTGATAGCAACACTTCCCAATCCTCATGAGTGGTCAAATTGCCGACTCAATATGCTTATCATTTTGGGGGACAAGACTGAGTGGGGAGCTAGGAACATAATCACACAAGATGGAATTCACTCATTCCCACCTTTAGGGTCTATTAGGTCCCTTTTCTAG

Protein sequence

ALVSRTFISNHFFWSDILTCHQATKRNYNRSLIATLPNPHEWSNCRLNMLIILGDKTEWGARNIITQDGIHSFPPLGSIRSLF
Homology
[Close]
BLAST of MELO3C034457 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 8.1e-06
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 55  DKTEWGARNIITQDGIHSFPPLGSIRS 82
           DKTEWGA NIITQDGIHSFPPLGSIRS
Sbjct: 184 DKTEWGAGNIITQDGIHSFPPLGSIRS 210

[Close]
BLAST of MELO3C034457 vs. NCBI nr
Match: KAA0034955.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21310.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 8.1e-06
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 55  DKTEWGARNIITQDGIHSFPPLGSIRS 82
           DKTEWGA NIITQDGIHSFPPLGSIRS
Sbjct: 501 DKTEWGAGNIITQDGIHSFPPLGSIRS 527

[Close]
BLAST of MELO3C034457 vs. NCBI nr
Match: KAA0052795.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK04172.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-05
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 55  DKTEWGARNIITQDGIHSFPPLGSIRS 82
           D+TEWGA NIITQDGIHSFPPLGSIRS
Sbjct: 227 DETEWGAGNIITQDGIHSFPPLGSIRS 253

[Close]
BLAST of MELO3C034457 vs. NCBI nr
Match: KAA0042877.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 6.9e-05
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 54  GDKTEWGARNIITQDGIHSFPPLGSIRSL 83
           GDKTEWGA NIITQDGIHSFPPLG   S+
Sbjct: 770 GDKTEWGAENIITQDGIHSFPPLGVFISI 798

[Close]
BLAST of MELO3C034457 vs. NCBI nr
Match: KAA0054558.1 (hypothetical protein E6C27_scaffold24G003480 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 0 

Query: 12  FFWSDILTCHQATKRNYNRSLIATLPNPH-EWSNCRLNMLIIL-------GDKTEWGARN 71
           F+ +  L C    +R  +R     +   H + S   +   I+L       GDKTEWGA N
Sbjct: 146 FYGTTRLLCRVGAQRGADRREAGRMREGHMDASGFLIAFAILLTQYAYHFGDKTEWGAGN 205

Query: 72  IITQDGIHSFPPLG 78
           IITQDGIHSFPPLG
Sbjct: 206 IITQDGIHSFPPLG 219

[Close]
BLAST of MELO3C034457 vs. ExPASy TrEMBL
Match: A0A5A7T0G5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00190 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 55  DKTEWGARNIITQDGIHSFPPLGSIRS 82
           DKTEWGA NIITQDGIHSFPPLGSIRS
Sbjct: 501 DKTEWGAGNIITQDGIHSFPPLGSIRS 527

[Close]
BLAST of MELO3C034457 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 55  DKTEWGARNIITQDGIHSFPPLGSIRS 82
           DKTEWGA NIITQDGIHSFPPLGSIRS
Sbjct: 184 DKTEWGAGNIITQDGIHSFPPLGSIRS 210

[Close]
BLAST of MELO3C034457 vs. ExPASy TrEMBL
Match: A0A5D3BZ66 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00450 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 55  DKTEWGARNIITQDGIHSFPPLGSIRS 82
           D+TEWGA NIITQDGIHSFPPLGSIRS
Sbjct: 227 DETEWGAGNIITQDGIHSFPPLGSIRS 253

[Close]
BLAST of MELO3C034457 vs. ExPASy TrEMBL
Match: A0A5D3C1P5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00970 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 54  GDKTEWGARNIITQDGIHSFPPLGSIRSL 83
           GDKTEWGA NIITQDGIHSFPPLG   S+
Sbjct: 770 GDKTEWGAENIITQDGIHSFPPLGVFISI 798

[Close]
BLAST of MELO3C034457 vs. ExPASy TrEMBL
Match: A0A5A7UHV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003480 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-05
Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 0 

Query: 12  FFWSDILTCHQATKRNYNRSLIATLPNPH-EWSNCRLNMLIIL-------GDKTEWGARN 71
           F+ +  L C    +R  +R     +   H + S   +   I+L       GDKTEWGA N
Sbjct: 146 FYGTTRLLCRVGAQRGADRREAGRMREGHMDASGFLIAFAILLTQYAYHFGDKTEWGAGN 205

Query: 72  IITQDGIHSFPPLG 78
           IITQDGIHSFPPLG
Sbjct: 206 IITQDGIHSFPPLG 219

The following BLAST results are available for this feature:
BLAST of MELO3C034457 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043328.18.1e-0696.30gag/pol protein [Cucumis melo var. makuwa][more]
KAA0034955.18.1e-0696.30gag/pol protein [Cucumis melo var. makuwa] >TYK21310.1 gag/pol protein [Cucumis ... [more]
KAA0052795.12.4e-0592.59gag/pol protein [Cucumis melo var. makuwa] >TYK04172.1 gag/pol protein [Cucumis ... [more]
KAA0042877.16.9e-0582.76gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [... [more]
KAA0054558.11.2e-0443.24hypothetical protein E6C27_scaffold24G003480 [Cucumis melo var. makuwa][more]
BLAST of MELO3C034457 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034457 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T0G53.9e-0696.30Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G001... [more]
A0A5A7TKJ43.9e-0696.30Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023... [more]
A0A5D3BZ661.1e-0592.59Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G0045... [more]
A0A5D3C1P53.3e-0582.76Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G... [more]
A0A5A7UHV65.7e-0543.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C034457 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034457.1MELO3C034457.1mRNA