MELO3C034424 (gene) Melon (DHL92) v4

Overview
NameMELO3C034424
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionAP-3 complex subunit sigma-like
Locationchr10: 16534966 .. 16540212 (+)
RNA-Seq ExpressionMELO3C034424
SyntenyMELO3C034424
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGTTTCAAGCGAATGGTACGTTTTTGAAATTTCAGCACTCATAATATCTTCCTCTTTTTTAAAGCTACAACCGAATAACACTGTCGTTCGTCGGGGTATGGATAGTATCGGAGATCACTACTTGAATTCCTTAGGGACCGACATTTTCATTGGAGAAGACCTAGACTGGTCTTTACCATTTCTCTATTTCTCTGTTTCTCTCTCTTTTGAAAATGTTGATGATGTGTGTTATGTAATGAGAGATGTAGAGATTTTTTCTTTTTTTTTTCTTTAACTGGAATTTGACGTTGGTGTGCTTTTGTTGAAGACAATTGAGGATTCGAAAAGCCGCTTTCTGGTTATTATGATTCCAGTTCGCCGGATGGATCAGCTGCTTCAAACAATATAATATAGAAAAGGAATAGAAGGAGGAAGGTTAACAATGGGGGAAAGCTCTCTTAATTGATAATTTTTGTTTCTAATTTGATTTAACTCAATTTGCAGAACTACTTACAAAGGGTGATGAGGTAGCAGTAAAGTTTCACTCTTATGATAATTTTTTTTTTGTTTATAAGAAGTAGCGAGGAAGTGTGTTTTAAGAATGAAATGTCTGAAAATGAAGGCTGTTCATCCGTTGTATTTTTTTTGCGCACATGTTTCAACATTTCATCAGTTACTGCTTGGTTATATAATTATGTTCTTATTGTTTCAAGGTTATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATTGATAAGAAGAAGTAAGAATTACCAACATTCATTTTGTAGTTGTCTGTTGTATTTATCTTTTCTTTTTTGTTATATCAAGTCGGAGTAAACTTTAAAGAAGTATCTTTTGGGGAAGTATTCTGTGTTCAACTCGTTTTCATCAAAGGAAACATAGCTACTGGTAGCTGATAATTGAATTTTCTTGCTTCTATGTTAGAATGTATGTTCAATGACTGACTGCTTTTTATTAGTTTCTTTCTTTTTGTCTTTTGATTGATATTCAATGAGCTGAATATGCCAGCGCGCACATACACTACAGCCTTACTGGAATGCTCTTTTTCATCTCTTTGAAAATGGCCTTATTTAACTTTTAAAATTATTTTCCTGTTTTCTTCACATAGTTCTGTTGTCTATTTGCTTTATGCATACAATTTCCATAGTTCAAGTTATGTACTTTTTCTTGTGTATAAAAGTGAAGGTAGAAAACATGATTATTGAAAATGTTTTTTTTCATCTTGTCTTATGTTCTTCTTTTCCACTTTTGTGGTATGAATTTTTCTTCAAATTAACACAATAATGTTCATTACATATTAGGTAGATTTTATTTTCTCATCATTGCCACATTCTATTAGTCAAGAATACCACGTTCTATTGCTATGTGGTAATATTTACTTAAGTTGTTAATGGTCATAAGTTGAATATAAAGTTTCATATTGATTTAAAAGAATGTACAGGGGTAAATGCATAGTTATGTTCTGTGTAAGTTTAATATCAACTTCATTTTATTTTAACTTGGAATTGGAAGAAGAACTAGAAGGGCTTTGACATAGATGTGAAGAAGTTGGAATAATTGGATTATTTTGACTTGGAACTGTGTATGATTTCAAAAAAATTTTGAAGGACTGAAACACACTTGAAAGAAGAAGTTCGCCAGGATATTAGACAAGTATGTTTGTACGATGCTCTACTGATTGTTTATTAATAGTATTACATTTTGTAAAGTATATATTGTGATGGGGTTTGATTACTACTTTGCCATGTTTTATCCATCTTTTACTTTATTTTACATGGCAAATAAAGGATGAAATACTAGTCATAAAAGATTTATTTTTAAAATTTTTTATTTAATTTTATGGAGAGAGAGAGGGCCTAGAAGGTGTTTGATAAAACGTGTGAATAGAGAAAAAGGTGAAAAATAGTGAAGAACAAGGCTTGGTTATTGCCGTTGTGCTCCACACTCTTCAATAGTATCAGATGGTACAGTTTACTTATTCCTAGGGAATTATATTGATTAGTATCAGATGGACGCATTTTGCTGTGTCTTGAATTTTCTTTAAGAAACTGCTATAAACAGGGTTGATTTTCATTCTTATGAATCAATTTAATACAAGAGTGCGAATGGAGGTTGCTGGTCATGGATTTATCCCAAATACCATGAACGAGATGAATGAACAAGAGGCTGCTTTGCCATGCGCTCAAACAAAGTAAAAAGCAGAAGCCATAGGTATATAAGGTTATGGAAATGAAGACATTGATTTTACAGCGTTTGTAAATTCCCTTTCAGTTTCTCAACGAAAATGCTTCCTTTTTTTGTTTTTGTTTGTCTTTTTTTGGTTCTTTAATATATATGTATGCCTGTGTCCTCCAAGGTTTCTCTTCTTTAAGCTAATTGATAGAATGAATCTCCTTTTTCAACTAATATTTTATTTTGTATTTTTTTTCTTTATCATTTTGATGGCTAAGAACTGTTCTGATGCTTTGTTTACAAAAGTGGTTCGATCCAATCAAGTTATGCCTTTAGATTCAAATTTTACTTATTTTTGGTGCAACCAATGTGATGCTGAGAATTTTAAAGGCCAAAATTTGATTACTTTTGTTAATAATATTGCTAAAATAGCATTATGAATCGATGAATCTTCGACCTTTAAAAGCATTACTAATTTCTTAATAAGAATGTCCAGTTGAGGTCTATGATTAGCATCTTTTTTATCCTAAGTATTCTAAAAGAAACTACACCTGAAAAGAGTACAGAAACTAGTTTATCATCTAAATTAATTTTTGAACTTGGAAATTTATTCCATCTAAGTTTTTAACTTTTCATAGTAGGATACTTTAATGTCCAGAAGGTGTCCATGTCTTGGAGCTATATCCTAAAAAAGTAAAGTATAAAAGTTCTAGAAAAGATGTCAACACTCAACATACCTTAACTTGTGATAAAGCATTCTCGATCCAAAATAAGGTCGTTGATAATGTAAGTACTTTCCATATTGTTAATTTTTTTGTATTACACTTTCTTATGATTATTGAATATATGTGGCCCTATCTTGATAAGGTTTATCTGTTTCATCAGCAATATCCATTCTTAAGTCATTCTATCAACTTTTTTGTTGGTTAACTATGTTAACTCCGCCTGTCATGTTGCATCTGTTCAGAATTTTTTTTTGTTTTTTTCTTGACACAAGCAATATGCAAAACAACAAGAAATATTACCTAACCTATAATTGCAGAGAAAATTCCCAAATTTAAGATTGATTCTGTTGAATTTGAAGCACTCACACTGGGGTCCTTGCCGCCAACATTTCAAGGTACTAATGTGATTCAACTCTTCTTAGTTCAATATAAGGCATGGTTATAGTATAGTAAACCTCTATAAGGCATGTTGAAATCTGGAATCACTTTTTTGTTGTGTCCACTTGAGATTATGTTGAAAATGAATAATTGAAAAACAAGCAATGTTGATATTAGTTAGATTCCATCTGAATACCATTGAAAATCTCTAGATTACTCTACAAAGTTCATTCACAGAGAGTATAGCCATTGATGTGATTTAAAGGAATTTTTTTTCCTTTTGATCTTTTGATTATTATGAATTTCAACCTTCGATTCTTAATTATCTTTTTTGTATTTTCAGTTCCTTTGATGTGTATGCTTTGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTAATTTGGGCCTCAAGAAATTAGTACGAACTATGTTGTAGAATTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAGAATTACAAAAGAAATGCATATACAAAAGTAGACTTGCAATGCACGAATGCATATACAAAAGAGTTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCGAAGGTATTTCAGATTTTTATTTGTCTTTGTCTTGAATTAAGGACTATTTTTGTGGTTAGTTTCTGACGGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATTAGCTTACTCTTAATAGTTGTTAGTTGATTTCTTTAACTGAATAAGTTTTGAACATACTTTGTTGTTGTGATGTTATCTACTTCTTGTAGATTGGCTCTACTGTTGGTAGTACTTATTTTAGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATTCAAGTTTATTTGAAGCCAAGTTTCATTCAAGGTCATTGAGTTTGGTTGATAAAAGTAATGTTTTTTATATGAAAATATCAAACAAATATGTAAAGTTTTCGAAATGTTGATACATATATGGTAAAATGTTAATATATGCTAAAGTTTTGGAATTTTTCTAGTGCATATTTATGTTTGAGTTTTAAAACTATATTTGATTTATATTTGTCGTTTATATGTAGTTGAGTTCTTGGACCAATGGGAGCATAATACAGGAACAATAATATAAATAAATTACAATTAAAAAAATGGAAAATTGCTTGACGGTTCTGAAATGTCATGAACAATAAATGTCTTGACGGTTCGCAAATGTCATAAACAACAAATTTATAGCTGGTGGTTTCAAGATGAAGTAGGTAAGAGCCTACCATGGTCTTTTGTAAACATTTTCGGAATCACCATCACAGTTTGTTTTGTCAAATCTACCATCCATTTCTTTCCATCTACATCTTGCACATTTTTTTCTTCTTCTTTTAGATCTTATTGTTATTCTTTGAGATAGCAACATCTTGAAGCACAGTTTAAGGGAAACATTCGAGAGGAAAACATTGGAAACCCTAAACCTATTGGTTTGAGAGCTCAGGTTTATAAAGAATACGAATGATCCAAAAATGAAAGTTTTTCTTCCACTAGCCCTAAACTCTACATATGGTCGCCACGTGGCCTTAATGCCCTTATAACTGAAATCACATTCATTAATTATACGATAAGGGTAAATAATCGATTAAACGATCATGTAGTTATGTCAAAGGATCTTAAATGAGAATTAATTGATTATTTATAGCACGAAAACTCTTCCCATGGTCTCCACGTGGCTTTAAACATTTGTGCTACTGTAAAGGAAAATGAAGATGAAGGGATGAAAAATGAAGCGTCTTTTTGCATTGTACTCACTGACAGGTTAATAAATGCGGGTTTTGACCATTTTTACCCACAAACCCTAAAACTCTACACATAA

mRNA sequence

ATGGTGTGTTTCAAGCGAATGCTACAACCGAATAACACTGTCGTTCGTCGGGGTATGGATAGTATCGGAGATCACTACTTGAATTCCTTAGGGACCGACATTTTCATTGGAGAAGACCTAGACTGGTTATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATTGATAAGAAGAATCGGAGTAAACTTTAAAGAAGTATCTTTTGGGGAAGTATTCTGTGTTCAACTCGTTTTCATCAAAGGAAACATAGCTACTGGGTTGATTTTCATTCTTATGAATCAATTTAATACAAGAGTGCGAATGGAGGTTGCTGGTCATGGATTTATCCCAAATACCATGAACGAGATGAATGAACAAGAGGCTGCTTTGCCATGCGCTCAAACAAAAAAAGATGTCAACACTCAACATACCTTAACTTGTGATAAAGCATTCTCGATCCAAAATAAGGTCGTTGATAATAGAAAATTCCCAAATTTAAGATTGATTCTGTTGAATTTGAAGCACTCACACTGGGGTCCTTGCCGCCAACATTTCAAGAATTACAAAAGAAATGCATATACAAAAGTAGACTTGCAATGCACGAATGCATATACAAAAGAGTTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCGAAGTTTCTGACGGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGCAACATCTTGAAGCACAGTTTAAGGGAAACATTCGAGAGGAAAACATTGGAAACCCTAAACCTATTGGTTTGAGAGCTCAGCACGAAAACTCTTCCCATGGTCTCCACGTGGCTTTAAACATTTGTGCTACTGTAAAGGAAAATGAAGATGAAGGGATGAAAAATGAAGCGTTAATAAATGCGGGTTTTGACCATTTTTACCCACAAACCCTAAAACTCTACACATAA

Coding sequence (CDS)

ATGGTGTGTTTCAAGCGAATGCTACAACCGAATAACACTGTCGTTCGTCGGGGTATGGATAGTATCGGAGATCACTACTTGAATTCCTTAGGGACCGACATTTTCATTGGAGAAGACCTAGACTGGTTATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATTGATAAGAAGAATCGGAGTAAACTTTAAAGAAGTATCTTTTGGGGAAGTATTCTGTGTTCAACTCGTTTTCATCAAAGGAAACATAGCTACTGGGTTGATTTTCATTCTTATGAATCAATTTAATACAAGAGTGCGAATGGAGGTTGCTGGTCATGGATTTATCCCAAATACCATGAACGAGATGAATGAACAAGAGGCTGCTTTGCCATGCGCTCAAACAAAAAAAGATGTCAACACTCAACATACCTTAACTTGTGATAAAGCATTCTCGATCCAAAATAAGGTCGTTGATAATAGAAAATTCCCAAATTTAAGATTGATTCTGTTGAATTTGAAGCACTCACACTGGGGTCCTTGCCGCCAACATTTCAAGAATTACAAAAGAAATGCATATACAAAAGTAGACTTGCAATGCACGAATGCATATACAAAAGAGTTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCGAAGTTTCTGACGGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGCAACATCTTGAAGCACAGTTTAAGGGAAACATTCGAGAGGAAAACATTGGAAACCCTAAACCTATTGGTTTGAGAGCTCAGCACGAAAACTCTTCCCATGGTCTCCACGTGGCTTTAAACATTTGTGCTACTGTAAAGGAAAATGAAGATGAAGGGATGAAAAATGAAGCGTTAATAAATGCGGGTTTTGACCATTTTTACCCACAAACCCTAAAACTCTACACATAA

Protein sequence

MVCFKRMLQPNNTVVRRGMDSIGDHYLNSLGTDIFIGEDLDWLLWRRQREVTSLALIRRIGVNFKEVSFGEVFCVQLVFIKGNIATGLIFILMNQFNTRVRMEVAGHGFIPNTMNEMNEQEAALPCAQTKKDVNTQHTLTCDKAFSIQNKVVDNRKFPNLRLILLNLKHSHWGPCRQHFKNYKRNAYTKVDLQCTNAYTKEFESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMQHLEAQFKGNIREENIGNPKPIGLRAQHENSSHGLHVALNICATVKENEDEGMKNEALINAGFDHFYPQTLKLYT
Homology
[Close]
BLAST of MELO3C034424 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 5.3e-32
Identity = 71/74 (95.95%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 181 NYKRNAYTKVDLQCTNAYTKEFESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDD 240
           NYKRNAYTK DLQC NAYTKE ESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDD
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDD 160

Query: 241 SGGLEATLGIKFIM 255
           SGGLEATLGIKFIM
Sbjct: 161 SGGLEATLGIKFIM 174

[Close]
BLAST of MELO3C034424 vs. NCBI nr
Match: TYK03061.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-23
Identity = 55/62 (88.71%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 156 KFPNLRLILLNLKHSHWGPCRQHFKNYKRNAYTKVDLQCTNAYTKEFESCFPSDANINNV 215
           KFPNLR ILLNLKHSHWGPCRQ FK+YK NAYTK DLQCTNAYTKE ESC PSDANINNV
Sbjct: 70  KFPNLRSILLNLKHSHWGPCRQLFKSYKTNAYTKADLQCTNAYTKEVESCLPSDANINNV 129

Query: 216 AK 218
           AK
Sbjct: 130 AK 131

[Close]
BLAST of MELO3C034424 vs. NCBI nr
Match: KAA0059829.1 (putative serine/threonine-protein kinase ndrD [Cucumis melo var. makuwa] >TYK24788.1 putative serine/threonine-protein kinase ndrD [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-04
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 100 VRMEVAGHGFIPNTMNEMNEQEAALPCAQTK 131
           VR EVAGHGFIPN MNEMNEQE ALPC +TK
Sbjct: 298 VRREVAGHGFIPNIMNEMNEQETALPCTRTK 328

[Close]
BLAST of MELO3C034424 vs. ExPASy TrEMBL
Match: A0A1S3CL75 (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.6e-32
Identity = 71/74 (95.95%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 181 NYKRNAYTKVDLQCTNAYTKEFESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDD 240
           NYKRNAYTK DLQC NAYTKE ESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDD
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDD 160

Query: 241 SGGLEATLGIKFIM 255
           SGGLEATLGIKFIM
Sbjct: 161 SGGLEATLGIKFIM 174

[Close]
BLAST of MELO3C034424 vs. ExPASy TrEMBL
Match: A0A5D3BTL5 (Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001620 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.7e-24
Identity = 55/62 (88.71%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 156 KFPNLRLILLNLKHSHWGPCRQHFKNYKRNAYTKVDLQCTNAYTKEFESCFPSDANINNV 215
           KFPNLR ILLNLKHSHWGPCRQ FK+YK NAYTK DLQCTNAYTKE ESC PSDANINNV
Sbjct: 70  KFPNLRSILLNLKHSHWGPCRQLFKSYKTNAYTKADLQCTNAYTKEVESCLPSDANINNV 129

Query: 216 AK 218
           AK
Sbjct: 130 AK 131

[Close]
BLAST of MELO3C034424 vs. ExPASy TrEMBL
Match: A0A0A0KH64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G397170 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-06
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 100 VRMEVAGHGFIPNTMNEMNEQEAALPCAQTK 131
           VRMEVAGHGFIPNTMN MNEQEAALPC QTK
Sbjct: 317 VRMEVAGHGFIPNTMNGMNEQEAALPCTQTK 347

[Close]
BLAST of MELO3C034424 vs. ExPASy TrEMBL
Match: A0A5A7V1Z3 (Putative serine/threonine-protein kinase ndrD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00330 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-05
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 100 VRMEVAGHGFIPNTMNEMNEQEAALPCAQTK 131
           VR EVAGHGFIPN MNEMNEQE ALPC +TK
Sbjct: 298 VRREVAGHGFIPNIMNEMNEQETALPCTRTK 328

The following BLAST results are available for this feature:
BLAST of MELO3C034424 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464326.15.3e-3295.95PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo][more]
TYK03061.12.0e-2388.71putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa][more]
KAA0059829.11.2e-0483.87putative serine/threonine-protein kinase ndrD [Cucumis melo var. makuwa] >TYK247... [more]
BLAST of MELO3C034424 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034424 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CL752.6e-3295.95AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=... [more]
A0A5D3BTL59.7e-2488.71Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A0A0KH641.8e-0693.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G397170 PE=4 SV=1[more]
A0A5A7V1Z35.9e-0583.87Putative serine/threonine-protein kinase ndrD OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C034424 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034424.1MELO3C034424.1mRNA