MELO3C034422 (gene) Melon (DHL92) v4

Overview
NameMELO3C034422
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Locationchr10: 16457813 .. 16460614 (-)
RNA-Seq ExpressionMELO3C034422
SyntenyMELO3C034422
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGAGAACATTTAAGAGTTGAGTTTGAAAGGAAGAAGAAGAGAAATTTTACTAGAATTTTGAGGTTGAAGAAGAGAAGGAGAACTCAAGCAAAGTGAATCCATGGCTGAATCTTGGTTCATTCTGCACATCAATTTAACTCATTTTTAAACAATTTTTATGCAGAAAGTTGGAGCAAATTCAGATATTCATTGGGTGCTTTTTGATGAAGAAAACAGGGAAGTTGGTTTTCACCCAAAATCAGGAGGTCTCTGGTTTTTCTTATATTTTAGAGTGTACCGATGGAGTTAGGATATCTATTTGATATGGTTGGAAATCTTATGCAATTTACTACAACTTTCATGCAGAAATCGTAAACCAAAATGACTAAAAATCTGTTAAATTGTAGGGACAAGTTAAAGAGGTCGTGTGCGCATGATTCTTGAAGTTGTTATGTTTCGAGGGTTATCTGAGTTTATTCACAGAGAATTAGATGTACATATCTTCAAGTAAGTTTTAAAGGATCTCAAAATGAAGATTTTGATATAAAGAACATTCATTTTGGTTAAGTATTGAGGAAGTTATAGTCATTTGAAGTTTATGTTAGAAATCTGGAAATTTTAGAGAGTTGTTGAAATAGGATTTTATTTCTTAAGTTTTATTTTCATGAGCGCCATCTTTAGTGCGACATGTTATGTATATCTTTAGAAAACCAAAATGTTTTGAGTTCTAATACTCGGTTGGGTTGTTGGCAGGCTAAGAAGAATTAAATCGAGCTTATAGACCAAGGATCTAGCCCAAGATGGTGATTGAGAAAACCAACTTTGAAATATTTCCATAACTGTTATTATTATTGAATGCGGTAAATGTTTATTTACGAAGCCATGAAAGGTATTTGAATTTCATGACTATTTTCAAGTATACATTTGGAGACTAGATTTCTTAAAGAAATTTATGCTAGCACGTAGATATTAAATGTAAAACAACTACAGTTTTCCACGAAAGAGATGAGTAAAGTTCGAGCTTTGTGTAAAATTTATAAGCAGGCATGTTTTAATATTTTTAGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTTAGATTCCGTTGTTGACGTTGAGTGTACTCCGTAACAACGATGCTGTCGTGAGTGCTGGGCAGGCCCCACAACGACAAAGACAATGGGAGTGCTAGGCGGGCCCCACTACATCGTAGAGCTTGTAAACGTTGTTGTACTGAGTGTACCTTACACAACGTAGATTTTTCATGTTAGTTAAAATACTTCGATATACTTGATATGCCTTGCTAGATTTCAATGAGGGACATGCTGAGTATTTGAGGAAGCTATTCTTACTACTACACGTTTACATTTACGACTTGTATAAACAGATTTATATGTGTAAAGTTTTCACGTGCTCTTATCTTTAAATGCATAGTTTTAAACTGAGTCACTCACTGAGCTTCATAGCTTACCCTTTCCAAAATGTTTTACCCATTTTCCAGGTAGAGATCGAGTTCCCGGTACCTGATAGACTGCCTTAGTCTGTTGAAGCTCTGTCATCGATTGCCAGTATGTGTTTTGAGTTGGGCATATAGTATGTTGTGTTATGATGTATATACATCCTTGTATGTTATAGATACTCCACAGTTTATATAAGCTTTAGGAGTTGTAGTTGTGTAAATTTTTGTTGGTTATATTTTGATTAAGGTGTCTTTAGGTTTACTCGTGAAATCAGTAAATTTCGAGGTACACTTCATGTGTGTGTTTGACTAGCCTAGGATCCGCTGTGTTTTGTTGCATGTAGAATAGTTTATATACTAGATTGGCAAGTTTATCACATGAAAGTTTTAAACAGAGTCGACAGATACAGATACAGAAAAGTATTGTTCGTCGGCTTTACGCTATCTTTCAGTCTAAGGTAGCAGGTAGTCCGAAAGGGAGGGTTTGACTTTGATTTTAGGAAAAACGCTTAACATTCATGAATCACCCATTCAACCGAAGAACACGTGAAGAGGTTTAAGGTACTAGAGTAATCTATGATTGCTTGAATCGACCCTAAGGTTAAGTGTATCTTTCGGACAATGAGCGATTTAGCAAACAGAAAAGTCAAAATAAATTAAATTCATGCATACTACTGAAATCCTCAATGCCTGAGATCAAATGCTTAATCTGTTGAAATTTAAGAACCCAAAGGAAGGCACCAAAGAAAGTGTACGCAGTTAGATTAGTAAGATTTGTGTCTTTACTAACTATGCGATAACCAAGAAAGATTATTTGAACATTCCGATGATTGATTGGAAGCAGAGGCTTATTGCGATGAGCAATCACAACGCAAAAAGCCATATAGCAAATGATCAAAGGAAGTTTATGAGAGGGTAATGTGACAAGGAAACCTATGAGGAGCAACACATGATGAGACACAACTCTTTCTCGCTAAAAGACCTTGAGATTTTCATATTTTTACTTGAAATTTGCATCTTAAACATTTTGTATTCTTTCATGTGCATTTATACTTGTGATTATTCTTTATACTTGGAAATTATATTGTATTTTGTATTTTTAGTTTTACTTTTCTATTATTTTCAAGTTAGGGAGGAGTCATCTCGTGGAACCATTAGGCTACTAAGATTTTGGTTTTTGCGTGATGAAACCATCTCGCAAGGAGGCTCGTGTCAAAATGCATTAGCTTTACGATCTTCTCACGAGATGGTTGAGCTTAGGATTTCATTTGAAAAAAATAGGGTTTCTAGGGAATTTCAACCATCTCATCGCTTTTAA

mRNA sequence

CAGAGAACATTTAAGAGTTGAGTTTGAAAGGAAGAAGAAGAGAAATTTTACTAGAATTTTGAGGTTGAAGAAGAGAAGGAGAACTCAAGCAAAAAAGTTGGAGCAAATTCAGATATTCATTGGGTGCTTTTTGATGAAGAAAACAGGGAAGTTGGTTTTCACCCAAAATCAGGAGGTAGAGATCGAGTTCCCGGTGTCTTTAGGTTTACTCGTGAAATCAGTAAATTTCGAGAGTCGACAGATACAGATACAGAAAAGTATTGTTCGTCGGCTTTACGCTATCTTTCAGTCTAAGGTAGCAGTTAGGGAGGAGTCATCTCGTGGAACCATTAGGCTACTAAGATTTTGGTTTTTGCGTGATGAAACCATCTCGCAAGGAGGCTCGTGTCAAAATGCATTAGCTTTACGATCTTCTCACGAGATGGTTGAGCTTAGGATTTCATTTGAAAAAAATAGGGTTTCTAGGGAATTTCAACCATCTCATCGCTTTTAA

Coding sequence (CDS)

AGAGAACATTTAAGAGTTGAGTTTGAAAGGAAGAAGAAGAGAAATTTTACTAGAATTTTGAGGTTGAAGAAGAGAAGGAGAACTCAAGCAAAAAAGTTGGAGCAAATTCAGATATTCATTGGGTGCTTTTTGATGAAGAAAACAGGGAAGTTGGTTTTCACCCAAAATCAGGAGGTAGAGATCGAGTTCCCGGTGTCTTTAGGTTTACTCGTGAAATCAGTAAATTTCGAGAGTCGACAGATACAGATACAGAAAAGTATTGTTCGTCGGCTTTACGCTATCTTTCAGTCTAAGGTAGCAGTTAGGGAGGAGTCATCTCGTGGAACCATTAGGCTACTAAGATTTTGGTTTTTGCGTGATGAAACCATCTCGCAAGGAGGCTCGTGTCAAAATGCATTAGCTTTACGATCTTCTCACGAGATGGTTGAGCTTAGGATTTCATTTGAAAAAAATAGGGTTTCTAGGGAATTTCAACCATCTCATCGCTTTTAA

Protein sequence

REHLRVEFERKKKRNFTRILRLKKRRRTQAKKLEQIQIFIGCFLMKKTGKLVFTQNQEVEIEFPVSLGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVAVREESSRGTIRLLRFWFLRDETISQGGSCQNALALRSSHEMVELRISFEKNRVSREFQPSHRF
Homology
[Close]
BLAST of MELO3C034422 vs. NCBI nr
Match: KAA0035073.1 (uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-07
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 57  QEVEIEFPVSLGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVA 101
           +++    PVSLGLLVKSVNFESRQIQ+QKS+VRRL+AIF+SKVA
Sbjct: 157 RKLHYRLPVSLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVA 200

[Close]
BLAST of MELO3C034422 vs. NCBI nr
Match: KAA0042135.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-05
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 0 

Query: 59  VEIEFPVS-------------LGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVAVREES 109
           VEIEFPV                LLVKS+NFESRQIQ+QKS+VRRL+AIF+SK  V EE+
Sbjct: 11  VEIEFPVPDRLALSAEASFSIASLLVKSINFESRQIQVQKSVVRRLHAIFRSK--VEEEN 70

[Close]
BLAST of MELO3C034422 vs. NCBI nr
Match: TYK31055.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-05
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 65  VSLGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVA 101
           VSLGLLVKSVNFESRQIQ+QKS+V  L+AIF+SKVA
Sbjct: 92  VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVA 127

[Close]
BLAST of MELO3C034422 vs. NCBI nr
Match: KAA0035470.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-05
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 65  VSLGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVA 101
           VSLGLLVKSVNFESRQIQ+QKS+V  L+AIF+SKVA
Sbjct: 469 VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVA 504

[Close]
BLAST of MELO3C034422 vs. NCBI nr
Match: KAA0042349.1 (uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa] >TYK15472.1 uncharacterized protein E5676_scaffold477G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 0 

Query: 8   FERKKKRNFTRILRLKKRR--RTQAKKLEQIQIFIGCFLMKKTGKLVFTQNQEVEIEFPV 67
           F   ++R FT  + +  R+  + ++K      +  G    +++ ++         I   V
Sbjct: 201 FNGCEQRRFTPGINISSRQDFKNRSKGQSSRNVSYGSVFQRQSQRI-----PSQPIRSTV 260

Query: 68  SLGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVA 101
           SLGLLVKSVNFESRQIQ+QKS+VRRL+AIF+SKVA
Sbjct: 261 SLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVA 290

[Close]
BLAST of MELO3C034422 vs. ExPASy TrEMBL
Match: A0A5A7SX02 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001380 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 57  QEVEIEFPVSLGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVA 101
           +++    PVSLGLLVKSVNFESRQIQ+QKS+VRRL+AIF+SKVA
Sbjct: 157 RKLHYRLPVSLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVA 200

[Close]
BLAST of MELO3C034422 vs. ExPASy TrEMBL
Match: A0A5A7TL21 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006230 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-05
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 0 

Query: 59  VEIEFPVS-------------LGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVAVREES 109
           VEIEFPV                LLVKS+NFESRQIQ+QKS+VRRL+AIF+SK  V EE+
Sbjct: 11  VEIEFPVPDRLALSAEASFSIASLLVKSINFESRQIQVQKSVVRRLHAIFRSK--VEEEN 70

[Close]
BLAST of MELO3C034422 vs. ExPASy TrEMBL
Match: A0A5A7SWQ7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001170 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 65  VSLGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVA 101
           VSLGLLVKSVNFESRQIQ+QKS+V  L+AIF+SKVA
Sbjct: 469 VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVA 504

[Close]
BLAST of MELO3C034422 vs. ExPASy TrEMBL
Match: A0A5D3E6W6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003130 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 65  VSLGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVA 101
           VSLGLLVKSVNFESRQIQ+QKS+V  L+AIF+SKVA
Sbjct: 92  VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVA 127

[Close]
BLAST of MELO3C034422 vs. ExPASy TrEMBL
Match: A0A5A7TLX3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00470 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-05
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 0 

Query: 8   FERKKKRNFTRILRLKKRR--RTQAKKLEQIQIFIGCFLMKKTGKLVFTQNQEVEIEFPV 67
           F   ++R FT  + +  R+  + ++K      +  G    +++ ++         I   V
Sbjct: 201 FNGCEQRRFTPGINISSRQDFKNRSKGQSSRNVSYGSVFQRQSQRI-----PSQPIRSTV 260

Query: 68  SLGLLVKSVNFESRQIQIQKSIVRRLYAIFQSKVA 101
           SLGLLVKSVNFESRQIQ+QKS+VRRL+AIF+SKVA
Sbjct: 261 SLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVA 290

The following BLAST results are available for this feature:
BLAST of MELO3C034422 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035073.12.2e-0775.00uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa][more]
KAA0042135.16.1e-0557.14gag protease polyprotein [Cucumis melo var. makuwa][more]
TYK31055.17.9e-0583.33gag/pol protein [Cucumis melo var. makuwa][more]
KAA0035470.17.9e-0583.33gag/pol protein [Cucumis melo var. makuwa][more]
KAA0042349.11.4e-0442.11uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa] >TYK1... [more]
BLAST of MELO3C034422 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034422 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SX021.1e-0775.00CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7TL212.9e-0557.14Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5A7SWQ73.8e-0583.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G0011... [more]
A0A5D3E6W63.8e-0583.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0031... [more]
A0A5A7TLX36.5e-0542.11Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of MELO3C034422 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034422.1MELO3C034422.1mRNA