MELO3C034418 (gene) Melon (DHL92) v4

Overview
NameMELO3C034418
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionZf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein
Locationchr10: 16047710 .. 16050035 (+)
RNA-Seq ExpressionMELO3C034418
SyntenyMELO3C034418
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAGTTCCTTTGAAGATACAAGCTTTCTTCCAACACTCCAACTTCAAGAACACTACGTGATTTGCTTTCTCAAATCAAGTGTAAGCATCCAATCGAGAGAGAATCAAAGGATCAAATACTAGAGATCGAACCACATAACGCGGTGTGTCAAGGGCATAATCGTCCAAGGTATTATTTACCGATGGCCGTATGCCCGAATACCCCCAAATCACTTTATCTTTATGTCTTGAAAGTAGTTTAGGTTAATTCTTTCGTTTAGGTGTCGCCGAGTCACAGTGTGACATTTCGGCTTTTTCATATGCAAGCGTGCCAAAGCCAAAAATCTCAATATGTACTATAGGGGGTACATGACTAGTCCGACCCCCGCCCAAGCCTTGTCACACTCTTTGCAAGTTAAGCTATTTTCTTTGCAATTGACAGTCTTCAATGCTTTCTTTATGATGTTTTCAACTATTTAATTTCTCTTTCCCGTTTTATAAAAAACATTTTCTCAAGAACGAGGAGGGAGGTTACATCATATCGCGAGTTTGTCCGTGGATTCCGAATTTCGAACGACTGACTTGTTGACTGAGCTAAACAAGTGCCGCACAATCGTGTTGAGAAGTTACGATTGTGACACGGTGCGTGCTAAGATGACACGTGTAAGGCGCGAAAGTGATCCTTGGATGTGAAAGGCCTCTATAAATAGGATCGAAAAGCTAAAGAAAATGGTAGCTTTTCCAAAAAGAAATGCGTAGATTTTCCTGATAAGGGAAAAAGAGGAATGTTTCGAATGATGATCAAACGGATCCTTCAGCTGTCAGACGAAAAGAGGAATCTAGAAGATGGAAAAGGAGAAACCAAGGCTAAGTATTTTGTGTGAGCGATGCTTTGTTTTTTAGCTATTATTTAAGCATGATTTCCAGTTACTCAAGGATTAGCTTGTGAGTGACAAAAATGATTTACATATGTATTGTGAACAACTTTACAATGTTTTTGTTTTACGAGCATTGTTAAAAAAAATGAATGTGGATATTGCCCTTCTTTGAATCATCAAGTATGTTTTATGAATCCTATTTCTGCAACTATTAAGATCCATTTTTGTGAACATTTTCTGAAAGTAAGGTGAAAGGAGTAAGTGTTTCTACAAACCCGAGTATTATTTGAAAGATGGAAAAACATGTTTGATAAGTAATGGTAAACGGTTTTGAATATGATTTCTAAATCGTTGGTTGATCTTTGTTCTGAGAAACAGTGTTTGCGCATGATGTTATTGACTATTCTTTCTCTATGTTAATGATTACGAAATGCATTATTGACCGTGTTGATCTGTGCTATGAGTAAGCAATGTTATTGTCCTGTATAGTTGTGGCCTGATCTATCACATGATGCTCGACGAAATCCCAAATAACTCGCCTGATACTGGCGAGAGCGAATCCCAAGTCAATGAGAGGAGATTCCTAGGTTTCAAAATGGGCTTGTTTTGAAATGATTCCAGTGCAAGGCGTTGTTGTGAGAAAGATGTTGATGAGACGCTGGTGGAGTGTAACCCCCAAGTCTAAGAATGTGAATGTTGTGAAACGTTATTAAATATCCCAGGTAACTTGCGTGATACTGGCGAGAGCGAATCCTAGGTCAGCGAGGGGAGATTCCCAAGTCTCAGAATGACCTTGCGATTGTGATCGTTGTACAGTTGGTAACTCGTTGGGTGGTTATTGAATTGTGGTGTTATGTGATATGTGTTAAATTGTTCGCTACAATGAACTTCATGTGTTGTTGACTTACTGCTTATCATAATTGGAATTTTGCTTATAATTGGAATTTTGTGTAACTTTATTACAGATTGATGAAGTACTTTCTTCTTGAAGATTTCCGGTTTAAACTTCTAATGTGTTCATGAGTTAGCCATTTGAATATGTTGCATGCCTTATGTGGAGATAGTTCACACGATACAAACATGAAGCCATATAATAGTAAGTAAGAGTCTAAGCATTTCATAGAATGAAGTCTTCTGTTAAATCAACTAAGTCTATGGTAAGCATTAAATAAGTAACATAACAGGAGAGAATTCCGCTTACTAGGCACCCAATGTGTTATCTCGCAGTAAGATAGGCGTTGAATGTCTAGGCAATCAATTAGACCCTGATCCAAAAGGGAGTCTTGTTGAAGGAAAACTCTGCTGATGAAGGTAATTTTTTACTAAGAGTAAGAAAGAAGCGTTCCACGAGGAAAGATGTAATTGGACAAAAGATGATGCGAAGAGGAGCGTGTGAGCCTAAGTACTATCACGTTAAAGTAAGAGATGCAAAAATAGTTGGCGAGGAAGAAGTATGTGATAAATGCTAA

mRNA sequence

TGAAGTTCCTTTGAAGATACAAGCTTTCTTCCAACACTCCAACTTCAAGAACACTACGTGATTTGCTTTCTCAAATCAAGTGTAAGCATCCAATCGAGAGAGAATCAAAGGATCAAATACTAGAGATCGAACCACATAACGCGGTGTGTCAAGGGCATAATCGTCCAAGTCGTTTAGGTGTCGCCGAGTCACAGTGTGACATTTCGGCTTTTTCATATGCAAGCGTGCCAAAGCCAAAAATCTCAATATGTACTATAGGGGAACGAGGAGGGAGGTTACATCATATCGCGAGTTTGTCCGTGGATTCCGAATTTCGAACGACTGACTTGTTGACTGAGCTAAACAAGTGCCGCACAATCGTGTTGAGAAGTTACGATTGTGACACGGTGCGTGCTAAGATGACACGTGATCGAAAAGCTAAAGAAAATGGTAGCTTTTCCAAAAAGAAATGCGTAGATTTTCCTGATAAGGGAAAAAGAGGAATGTTTCGAATGATGATCAAACGGATCCTTCAGCTGTCAGACGAAAAGAGGAATCTAGAAGATGGAAAAGGAGAAACCAAGGCTAATTGTGGCCTGATCTATCACATGATGCTCGACGAAATCCCAAATAACTCGCCTGATACTGGCGAGAGCGAATCCCAAGTCAATGAGAGGAGATTCCTAGTGCAAGGCGTTGTTGTGAGAAAGATGTTGATGAGACGCTGGTGGAGTGTAACCCCCAAGTCTAAGAATGTAACTTGCGTGATACTGGCGAGAGCGAATCCTAGATTGATGAAGTACTTTCTTCTTGAAGATTTCCGAGTAAGAAAGAAGCGTTCCACGAGGAAAGATGTAATTGGACAAAAGATGATGCGAAGAGGAGCGTGTGAGCCTAAGTACTATCACGTTAAAGTAAGAGATGCAAAAATAGTTGGCGAGGAAGAAGTATGTGATAAATGCTAA

Coding sequence (CDS)

ATGACACGTGATCGAAAAGCTAAAGAAAATGGTAGCTTTTCCAAAAAGAAATGCGTAGATTTTCCTGATAAGGGAAAAAGAGGAATGTTTCGAATGATGATCAAACGGATCCTTCAGCTGTCAGACGAAAAGAGGAATCTAGAAGATGGAAAAGGAGAAACCAAGGCTAATTGTGGCCTGATCTATCACATGATGCTCGACGAAATCCCAAATAACTCGCCTGATACTGGCGAGAGCGAATCCCAAGTCAATGAGAGGAGATTCCTAGTGCAAGGCGTTGTTGTGAGAAAGATGTTGATGAGACGCTGGTGGAGTGTAACCCCCAAGTCTAAGAATGTAACTTGCGTGATACTGGCGAGAGCGAATCCTAGATTGATGAAGTACTTTCTTCTTGAAGATTTCCGAGTAAGAAAGAAGCGTTCCACGAGGAAAGATGTAATTGGACAAAAGATGATGCGAAGAGGAGCGTGTGAGCCTAAGTACTATCACGTTAAAGTAAGAGATGCAAAAATAGTTGGCGAGGAAGAAGTATGTGATAAATGCTAA

Protein sequence

MTRDRKAKENGSFSKKKCVDFPDKGKRGMFRMMIKRILQLSDEKRNLEDGKGETKANCGLIYHMMLDEIPNNSPDTGESESQVNERRFLVQGVVVRKMLMRRWWSVTPKSKNVTCVILARANPRLMKYFLLEDFRVRKKRSTRKDVIGQKMMRRGACEPKYYHVKVRDAKIVGEEEVCDKC
Homology
[Close]
BLAST of MELO3C034418 vs. NCBI nr
Match: KAA0043449.1 (hypothetical protein E6C27_scaffold1639G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 46/107 (42.99%), Postives = 52/107 (48.60%), Query Frame = 0 

Query: 64  MMLDEIPNNSPDTGESESQVNERRFLVQGVVV--------------------RKMLMRRW 123
           M LD I  NS DTGESESQV+E R    G VV                    RKM MRRW
Sbjct: 1   MTLDGISGNSRDTGESESQVSEGRISKSGRVVRKMWRDAVGYPSVCRCTAVERKMWMRRW 60

Query: 124 WSVTPKSKN-----------VTCVILARANPRLMKYFLLEDFRVRKK 140
           WS TP+SKN           VT +IL RAN R  K     DF+V ++
Sbjct: 61  WSATPRSKNVNVVRCCWISQVTRMILERANLRSAK----GDFQVLER 103

[Close]
BLAST of MELO3C034418 vs. NCBI nr
Match: TYK24232.1 (hypothetical protein E5676_scaffold27G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-05
Identity = 36/73 (49.32%), Postives = 38/73 (52.05%), Query Frame = 0 

Query: 64  MMLDEIPNNSPDTGESESQVNERRFLVQGVVV--------------------RKMLMRRW 117
           M LD I  NS DTGESESQV+E R    G VV                    RKM MRRW
Sbjct: 1   MTLDGISGNSRDTGESESQVSEGRISKSGRVVRKMWRDVVGYPSVCRCTAVERKMWMRRW 60

[Close]
BLAST of MELO3C034418 vs. NCBI nr
Match: TYK04364.1 (hypothetical protein E5676_scaffold675G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 9.7e-04
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 90  VQGVVVRKMLMRRWWSVTPKSKN-----------VTCVILARANPRLMKYFLLEDFRVRK 145
           V  + VRKMLMRRWWSVTP+SKN           VT VILARANPRL+    ++   +R 
Sbjct: 10  VVALAVRKMLMRRWWSVTPRSKNVNMARHCLISQVTHVILARANPRLLGIEAMQKLILRL 69

[Close]
BLAST of MELO3C034418 vs. ExPASy TrEMBL
Match: A0A5A7TQG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00660 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.6e-06
Identity = 46/107 (42.99%), Postives = 52/107 (48.60%), Query Frame = 0 

Query: 64  MMLDEIPNNSPDTGESESQVNERRFLVQGVVV--------------------RKMLMRRW 123
           M LD I  NS DTGESESQV+E R    G VV                    RKM MRRW
Sbjct: 1   MTLDGISGNSRDTGESESQVSEGRISKSGRVVRKMWRDAVGYPSVCRCTAVERKMWMRRW 60

Query: 124 WSVTPKSKN-----------VTCVILARANPRLMKYFLLEDFRVRKK 140
           WS TP+SKN           VT +IL RAN R  K     DF+V ++
Sbjct: 61  WSATPRSKNVNVVRCCWISQVTRMILERANLRSAK----GDFQVLER 103

[Close]
BLAST of MELO3C034418 vs. ExPASy TrEMBL
Match: A0A5D3DL45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00390 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 36/73 (49.32%), Postives = 38/73 (52.05%), Query Frame = 0 

Query: 64  MMLDEIPNNSPDTGESESQVNERRFLVQGVVV--------------------RKMLMRRW 117
           M LD I  NS DTGESESQV+E R    G VV                    RKM MRRW
Sbjct: 1   MTLDGISGNSRDTGESESQVSEGRISKSGRVVRKMWRDVVGYPSVCRCTAVERKMWMRRW 60

[Close]
BLAST of MELO3C034418 vs. ExPASy TrEMBL
Match: A0A5D3BZE8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00350 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-04
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 90  VQGVVVRKMLMRRWWSVTPKSKN-----------VTCVILARANPRLMKYFLLEDFRVRK 145
           V  + VRKMLMRRWWSVTP+SKN           VT VILARANPRL+    ++   +R 
Sbjct: 10  VVALAVRKMLMRRWWSVTPRSKNVNMARHCLISQVTHVILARANPRLLGIEAMQKLILRL 69

[Close]
BLAST of MELO3C034418 vs. ExPASy TrEMBL
Match: A0A5A7VFP5 (Zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00490 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-04
Identity = 35/81 (43.21%), Postives = 38/81 (46.91%), Query Frame = 0 

Query: 58  CGLIYHMMLDEIPNNSPDTGESESQVNERRFLVQGVVVRKMLMRRWWSVTPKSKN----- 117
           CGLIY  MLD IP                      + +RKMLMR WW VT KSKN     
Sbjct: 220 CGLIYRTMLDGIPT---------------------LAMRKMLMRHWWGVTSKSKNVNVAR 279

Query: 118 ------VTCVILARANPRLMK 128
                 VT VILARANP  M+
Sbjct: 280 NYWISQVTHVILARANPMPMR 279

The following BLAST results are available for this feature:
BLAST of MELO3C034418 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043449.11.4e-0542.99hypothetical protein E6C27_scaffold1639G00660 [Cucumis melo var. makuwa][more]
TYK24232.13.0e-0549.32hypothetical protein E5676_scaffold27G00390 [Cucumis melo var. makuwa][more]
TYK04364.19.7e-0446.97hypothetical protein E5676_scaffold675G00350 [Cucumis melo var. makuwa][more]
BLAST of MELO3C034418 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034418 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TQG86.6e-0642.99Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DL451.5e-0549.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BZE84.7e-0446.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VFP58.0e-0443.21Zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-... [more]
BLAST of MELO3C034418 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034418.1MELO3C034418.1mRNA