MELO3C034414 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034414
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	60S ribosomal protein L30
Location	chr10: 15939830 .. 15941943 (-)
RNA-Seq Expression	MELO3C034414
Synteny	MELO3C034414

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGTTTCTTCTTCCTTTCTCAGCCAATCTCCATTCTTAGTTCTCCCATTTTCATATTGATCTTCCCTAGCTTTGGAGTACTGTGGCGGTTTTCTTTCTTGTTGTTTAACCTTAAACAGAAGAAGACCCATGAGAGCATCAAGAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTAGGATACAAAACCATCCTCAAGACCTTGAGGAACTCTAAAGGAAATCTATTGATTAAGCTTTCTTGTTTTTGTTACTGATCTGATCTCTAGATTTTGCATCGATTGATTCTAGTATCTTTTTTTTTTAGTTGATTAGTTGTATTTGTATCTACTTGGATGATTATTCTGATCGGTTCTTTTTTTTTTTTTCTTGTGAAAGGTATCTGATGATTTTGTTTTTTGCAACTGTTCAAGCAATAGTAAGATTACTTTTATTGGATTAGAGTGTTATTTTGTAATTTAATTATTTTTTAAGATTTTTAGGTTTAGAAGTGGTAAACATATTTTAAATTTTTCTTTCTTTGGTTAATTAGGTTTAAAACCGTTCAAGCAACAGTAAGATTACTTCTAAAATGATTTAATATATGTGAATTATTACCTAGTTGTGGCCATTTTCAATACGTATTCCTACCACATAGGCCAAGAAAGACCAATCTAAAACTCTACTTTTGGCCATTAATCATATGCCCTTTAATTAGTTTTTTTCTACACTTGGAAGTAGATCACAATCATTCTGAGAATGGGAAGATTGGATTTTTGTCTGTAAAAATTGGATTGGAGTATTCTTTTTCAGGTTATAGAAAGTGAACATACGAGAAATTAGATATTGATTATAGCTGTATTGGTTATGGAGTTGTTTGCTATTTTGCTTTGTAATATGGTTATGTTGTTCAAATCAGATTCTTGTTTTTGATGGCTCTATTGTAATAATTGTTTTTGAGCCATAAGAACAACCAAGAGATATATTGTTCTCTTATCTATGTAATCAAGCAAATCACAAGCACCAAATAATGTGTAGGAAATTGATGGTTCAAGTTCAAGCTTTAGTCAACTATTTGGAATTGAAGGTATTATACAAAATTTTTTATCTTACCATGTTTCTCAATTTGTTTTTTAGAAAGACTTGAATGAACAAGTTGCAATATTATCTTGGCAAGACTGTTATGTTGTTGCACTTGGTTTAGAATTTTTTTTTTGGTGGTGTTGTTTCAAATACTTAGTTTAACAATTTAGAAAAGCAGGAAGTTTCATTATGTCAAGAAAAAACTATTTCGGTGGTGACTGTATGTTTGGTTCTTTTGTTTGGCAATGAAAAGACTATTCTGGTGGTGACTATTTCTCAAAACTTGACTTGGTTTTTAAAAAACATGAATAAAAAGATGATAACAAAGCAAGAAATGTAGATGTGGTCACTTATTATATTCTTGGATTTTTTGATGCACTTGTATTTTTCAAGTAACTAAAGGAAAATTTGGTCATGGGAAGTTAACAAAATCTTGCCTTTGTTTGGAACTACGATATCATCCTCATCTCGTAACTAACTGTGATTTTGATATTGTTGGATTGAAGAATTACTTGAATGCTCAGTATTTTGGTGAGATTGGTATTGGTGCTCCCCCTCAAAAGTTTACTGTTGATTCAAATTTGTGGGTTCCATCATCCAAGTGCTTCTCTGTATGTTTCCACCATCTTAGTAATTAAATGATTTATTTGTCTATTATATATTACAGCATGAAATGATTTTGAGTTGTCTGCAGGTGGCTTGTCTATTACATTCCAAGTACAAGTCAAAGCGTTTGAATACTTATAAAAGAATGGTCAGTACAAGTCCTAAACCCTAAATCCTAAACCATCTTGATGTCTTTCACAGGGAGCTATAACTAAACAAATGACTAGAATAGAAGAAATGGTTGCAAGTGAGTACAATTAACTAGACCCTCATCTTTGTGACAAGATCTTGAAGTTGGTCATTTGTGGAGCGTTTTAGTTAGCTATTGGTTGCAGTTTTAGTTATTGCTCTCTCAATATATTCTTTTTCTTTCTTTCTTTCTTTTTCTTCCTTTCTTTCTTTCTTTTTTTCAAAGGATGATCATTGTAATACTTAA

mRNA sequence

ATGATAAGTTTCTTCTTCCTTTCTCAGCCAATCTCCATTCTTAGTTCTCCCATTTTCATATTGATCTTCCCTAGCTTTGGAGTACTGTGGCGGTTTTCTTTCTTGTTGTTTAACCTTAAACAGAAGAAGACCCATGAGAGCATCAAGAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTAGGATACAAAACCATCCTCAAGACCTTGAGGAACTCTAAAGGAAATCTATTGATTAAGCTTTCTTGTTTTTGTTACTGAATTACTTGAATGCTCAGTATTTTGGTGAGATTGGTATTGGTGCTCCCCCTCAAAAGTTTACTGTTGATTCAAATTTGTGGGTTCCATCATCCAAGTGCTTCTCTGTGGCTTGTCTATTACATTCCAAGTACAAGTCAAAGCGTTTGAATACTTATAAAAGAATGGATGATCATTGTAATACTTAA

Coding sequence (CDS)

ATGATAAGTTTCTTCTTCCTTTCTCAGCCAATCTCCATTCTTAGTTCTCCCATTTTCATATTGATCTTCCCTAGCTTTGGAGTACTGTGGCGGTTTTCTTTCTTGTTGTTTAACCTTAAACAGAAGAAGACCCATGAGAGCATCAAGAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTAGGATACAAAACCATCCTCAAGACCTTGAGGAACTCTAAAGGAAATCTATTGATTAAGCTTTCTTGTTTTTGTTACTGA

Protein sequence

MISFFFLSQPISILSSPIFILIFPSFGVLWRFSFLLFNLKQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLIKLSCFCY

Homology

[Close]

BLAST of MELO3C034414 vs. NCBI nr
Match: CAA2993746.1 (60S ribosomal L30 [Olea europaea subsp. europaea])

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-11
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 14 LSSPI-FILIF---PSFGVLWRFSFLLFNLKQKKTHESIKNRLALVMKSGKYTLGYKTIL 73
          LSS +  +LIF   P+  +   F FL+  + QKKTHESI NRLALVMKSGKYTLGYKT+L
Sbjct: 14 LSSDLDLVLIFGVLPNLNLYNSFLFLILFVFQKKTHESINNRLALVMKSGKYTLGYKTVL 73

Query: 74 KTLRNSKGNLLI 82
          KTLRNSKG L++
Sbjct: 74 KTLRNSKGKLIL 85

[Close]

BLAST of MELO3C034414 vs. NCBI nr
Match: PHT34863.1 (60S ribosomal protein L30 [Capsicum baccatum] >TMW91021.1 hypothetical protein EJD97_014913 [Solanum chilense])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 41 QKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          QKKTHESI NRLALVMKSGKYTLGYKT+LKTLRNSKG L+I
Sbjct: 2  QKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLII 42

[Close]

BLAST of MELO3C034414 vs. NCBI nr
Match: XP_004251199.1 (60S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal protein L30 [Solanum pennellii] >XP_016548732.1 PREDICTED: 60S ribosomal protein L30 [Capsicum annuum])

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KKTHESI NRLALVMKSGKYTLGYKT+LKTLRNSKG L+I
Sbjct: 6  KTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLII 47

[Close]

BLAST of MELO3C034414 vs. NCBI nr
Match: XP_008451087.1 (PREDICTED: 60S ribosomal protein L30 [Cucumis melo] >KAA0055665.1 60S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09919.1 60S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KKTHESI NRLALVMKSGKYTLGYKT+LKTLRNSKG L+I
Sbjct: 6  KTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLII 47

[Close]

BLAST of MELO3C034414 vs. NCBI nr
Match: KAG2403899.1 (60S ribosomal protein [Vigna angularis])

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 33 SFLLFNLKQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          SFL F+   KKTHESI NRLALVMKSGKYTLGYKT+LK+LR+SKG L+I
Sbjct: 9  SFLCFSAINKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLII 57

[Close]

BLAST of MELO3C034414 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-12
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KKTHESI NRLALVMKSGKYTLGYKT+LK+LR+SKG L+I
Sbjct: 6  KTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLII 47

[Close]

BLAST of MELO3C034414 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-10
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KKTHESI +RLALVMKSGK+TLGYKT+L++LR++KG L+I
Sbjct: 6  KTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLII 47

[Close]

BLAST of MELO3C034414 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-10
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KK+HE I +RLALVMKSGKYTLGYK++LK+LR+SKG L++
Sbjct: 6  KTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLIL 47

[Close]

BLAST of MELO3C034414 vs. ExPASy Swiss-Prot
Match: Q9LSA3 (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-10
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KK+HE I +RLALVMKSGKYTLGYK++LK+LR+SKG L++
Sbjct: 6  KAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLIL 47

[Close]

BLAST of MELO3C034414 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-10
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNL-LIKLSC 86
          K KK+HE I +RLALVMKSGKYTLGYK++LK+LR SKG L LI  +C
Sbjct: 6  KTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNC 52

[Close]

BLAST of MELO3C034414 vs. ExPASy TrEMBL
Match: A0A2G2VPI0 (60S ribosomal protein L30 OS=Capsicum baccatum OX=33114 GN=CQW23_26663 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.3e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 41 QKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          QKKTHESI NRLALVMKSGKYTLGYKT+LKTLRNSKG L+I
Sbjct: 2  QKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLII 42

[Close]

BLAST of MELO3C034414 vs. ExPASy TrEMBL
Match: A0A6N2BD71 (Ribosomal_L7Ae domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_014913 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.3e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 41 QKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          QKKTHESI NRLALVMKSGKYTLGYKT+LKTLRNSKG L+I
Sbjct: 2  QKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLII 42

[Close]

BLAST of MELO3C034414 vs. ExPASy TrEMBL
Match: A0A1S3X2T9 (60S ribosomal protein L30-like OS=Nicotiana tabacum OX=4097 GN=LOC107760678 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.6e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KKTHESI NRLALVMKSGKYTLGYKT+LKTLRNSKG L+I
Sbjct: 6  KTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLII 47

[Close]

BLAST of MELO3C034414 vs. ExPASy TrEMBL
Match: A0A5D3CI16 (60S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00350 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.6e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KKTHESI NRLALVMKSGKYTLGYKT+LKTLRNSKG L+I
Sbjct: 6  KTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLII 47

[Close]

BLAST of MELO3C034414 vs. ExPASy TrEMBL
Match: A0A6J1JJ11 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.6e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KKTHESI NRLALVMKSGKYTLGYKT+LKTLRNSKG L+I
Sbjct: 6  KTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLII 47

[Close]

BLAST of MELO3C034414 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-11
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KK+HE I +RLALVMKSGKYTLGYK++LK+LR+SKG L++
Sbjct: 6  KTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLIL 47

[Close]

BLAST of MELO3C034414 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-11
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNLLI 82
          K KK+HE I +RLALVMKSGKYTLGYK++LK+LR+SKG L++
Sbjct: 6  KAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLIL 47

[Close]

BLAST of MELO3C034414 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-11
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 40 KQKKTHESIKNRLALVMKSGKYTLGYKTILKTLRNSKGNL-LIKLSC 86
          K KK+HE I +RLALVMKSGKYTLGYK++LK+LR SKG L LI  +C
Sbjct: 6  KTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNC 52

The following BLAST results are available for this feature:

BLAST of MELO3C034414 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA2993746.1	3.1e-11	63.89	60S ribosomal L30 [Olea europaea subsp. europaea]	[more]
PHT34863.1	1.5e-10	90.24	60S ribosomal protein L30 [Capsicum baccatum] >TMW91021.1 hypothetical protein E...	[more]
XP_004251199.1	2.0e-10	88.10	60S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal p...	[more]
XP_008451087.1	2.0e-10	88.10	PREDICTED: 60S ribosomal protein L30 [Cucumis melo] >KAA0055665.1 60S ribosomal ...	[more]
KAG2403899.1	2.0e-10	77.55	60S ribosomal protein [Vigna angularis]	[more]

BLAST of MELO3C034414 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49884	2.9e-12	83.33	60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1	[more]
Q9M5M6	2.1e-10	73.81	60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1	[more]
Q9C8F7	4.6e-10	71.43	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P...	[more]
Q9LSA3	4.6e-10	71.43	60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1	[more]
Q8VZ19	6.0e-10	70.21	60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1	[more]

BLAST of MELO3C034414 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2VPI0	7.3e-11	90.24	60S ribosomal protein L30 OS=Capsicum baccatum OX=33114 GN=CQW23_26663 PE=3 SV=1	[more]
A0A6N2BD71	7.3e-11	90.24	Ribosomal_L7Ae domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_01...	[more]
A0A1S3X2T9	9.6e-11	88.10	60S ribosomal protein L30-like OS=Nicotiana tabacum OX=4097 GN=LOC107760678 PE=3...	[more]
A0A5D3CI16	9.6e-11	88.10	60S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1JJ11	9.6e-11	88.10	60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 ...	[more]

BLAST of MELO3C034414 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36240.1	3.3e-11	71.43	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	3.3e-11	71.43	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G77940.1	4.3e-11	70.21	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 38..84 e-value: 5.3E-12 score: 47.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 38..81
IPR039109	Ribosomal protein L30/YlxQ	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 39..81
None	No IPR available	PANTHER	PTHR11449:SF23	60S RIBOSOMAL PROTEIN L30	coord: 39..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034414.1	MELO3C034414.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding